data_1BH2 # _model_server_result.job_id dITm38faGF1Zk7ijOrQo9w _model_server_result.datetime_utc '2025-02-28 15:01:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":355}' # _entry.id 1BH2 # _exptl.entry_id 1BH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BH2 _cell.length_a 79.584 _cell.length_b 79.584 _cell.length_c 105.556 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 16 A SER 47 1_555 B MG MG . A MG 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 A OG1 THR 150 A THR 181 1_555 B MG MG . A MG 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 C O2G GSP . A GSP 355 1_555 B MG MG . A MG 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 C O2B GSP . A GSP 355 1_555 B MG MG . A MG 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 B MG MG . A MG 357 1_555 D O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc6 B MG MG . A MG 357 1_555 D O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O3B GSP sing 129 n n PG S1G GSP doub 130 n n PG O2G GSP sing 131 n n PG O3G GSP sing 132 n n O3B PB GSP sing 133 n n O2G HOG2 GSP sing 134 n n O3G HOG3 GSP sing 135 n n PB O1B GSP doub 136 n n PB O2B GSP sing 137 n n PB O3A GSP sing 138 n n O2B HOB2 GSP sing 139 n n PA O1A GSP doub 140 n n PA O2A GSP sing 141 n n PA O3A GSP sing 142 n n PA O5' GSP sing 143 n n O2A HOA2 GSP sing 144 n n O5' C5' GSP sing 145 n n C5' C4' GSP sing 146 n n C5' "H5'1" GSP sing 147 n n C5' "H5'2" GSP sing 148 n n C4' O4' GSP sing 149 n n C4' C3' GSP sing 150 n n C4' H4' GSP sing 151 n n O4' C1' GSP sing 152 n n C3' O3' GSP sing 153 n n C3' C2' GSP sing 154 n n C3' H3' GSP sing 155 n n O3' HO3' GSP sing 156 n n C2' O2' GSP sing 157 n n C2' C1' GSP sing 158 n n C2' H2' GSP sing 159 n n O2' HO2' GSP sing 160 n n C1' N9 GSP sing 161 n n C1' H1' GSP sing 162 n n N9 C8 GSP sing 163 n y N9 C4 GSP sing 164 n y C8 N7 GSP doub 165 n y C8 H8 GSP sing 166 n n N7 C5 GSP sing 167 n y C5 C6 GSP sing 168 n n C5 C4 GSP doub 169 n y C6 O6 GSP doub 170 n n C6 N1 GSP sing 171 n n N1 C2 GSP sing 172 n n N1 HN1 GSP sing 173 n n C2 N2 GSP sing 174 n n C2 N3 GSP doub 175 n n N2 HN21 GSP sing 176 n n N2 HN22 GSP sing 177 n n N3 C4 GSP sing 178 n n # _atom_sites.entry_id 1BH2 _atom_sites.fract_transf_matrix[1][1] 0.012565 _atom_sites.fract_transf_matrix[1][2] 0.007255 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 357 357 MG MG . C 3 GSP A 1 355 355 GSP GSP . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 406 406 HOH HOH . D 4 HOH A 6 407 407 HOH HOH . D 4 HOH A 7 409 409 HOH HOH . D 4 HOH A 8 411 411 HOH HOH . D 4 HOH A 9 413 413 HOH HOH . D 4 HOH A 10 414 414 HOH HOH . D 4 HOH A 11 416 416 HOH HOH . D 4 HOH A 12 418 418 HOH HOH . D 4 HOH A 13 424 424 HOH HOH . D 4 HOH A 14 426 426 HOH HOH . D 4 HOH A 15 428 428 HOH HOH . D 4 HOH A 16 429 429 HOH HOH . D 4 HOH A 17 432 432 HOH HOH . D 4 HOH A 18 434 434 HOH HOH . D 4 HOH A 19 435 435 HOH HOH . D 4 HOH A 20 436 436 HOH HOH . D 4 HOH A 21 437 437 HOH HOH . D 4 HOH A 22 438 438 HOH HOH . D 4 HOH A 23 439 439 HOH HOH . D 4 HOH A 24 441 441 HOH HOH . D 4 HOH A 25 442 442 HOH HOH . D 4 HOH A 26 445 445 HOH HOH . D 4 HOH A 27 448 448 HOH HOH . D 4 HOH A 28 449 449 HOH HOH . D 4 HOH A 29 450 450 HOH HOH . D 4 HOH A 30 454 454 HOH HOH . D 4 HOH A 31 461 461 HOH HOH . D 4 HOH A 32 464 464 HOH HOH . D 4 HOH A 33 466 466 HOH HOH . D 4 HOH A 34 468 468 HOH HOH . D 4 HOH A 35 470 470 HOH HOH . D 4 HOH A 36 471 471 HOH HOH . D 4 HOH A 37 472 472 HOH HOH . D 4 HOH A 38 473 473 HOH HOH . D 4 HOH A 39 474 474 HOH HOH . D 4 HOH A 40 478 478 HOH HOH . D 4 HOH A 41 480 480 HOH HOH . D 4 HOH A 42 483 483 HOH HOH . D 4 HOH A 43 486 486 HOH HOH . D 4 HOH A 44 487 487 HOH HOH . D 4 HOH A 45 488 488 HOH HOH . D 4 HOH A 46 492 492 HOH HOH . D 4 HOH A 47 493 493 HOH HOH . D 4 HOH A 48 494 494 HOH HOH . D 4 HOH A 49 496 496 HOH HOH . D 4 HOH A 50 498 498 HOH HOH . D 4 HOH A 51 499 499 HOH HOH . D 4 HOH A 52 500 500 HOH HOH . D 4 HOH A 53 501 501 HOH HOH . D 4 HOH A 54 502 502 HOH HOH . D 4 HOH A 55 503 503 HOH HOH . D 4 HOH A 56 504 504 HOH HOH . D 4 HOH A 57 505 505 HOH HOH . D 4 HOH A 58 506 506 HOH HOH . D 4 HOH A 59 507 507 HOH HOH . D 4 HOH A 60 508 508 HOH HOH . D 4 HOH A 61 515 515 HOH HOH . D 4 HOH A 62 516 516 HOH HOH . D 4 HOH A 63 517 517 HOH HOH . D 4 HOH A 64 518 518 HOH HOH . D 4 HOH A 65 522 522 HOH HOH . D 4 HOH A 66 526 526 HOH HOH . D 4 HOH A 67 527 527 HOH HOH . D 4 HOH A 68 528 528 HOH HOH . D 4 HOH A 69 529 529 HOH HOH . D 4 HOH A 70 530 530 HOH HOH . D 4 HOH A 71 531 531 HOH HOH . D 4 HOH A 72 532 532 HOH HOH . D 4 HOH A 73 533 533 HOH HOH . D 4 HOH A 74 534 534 HOH HOH . D 4 HOH A 75 535 535 HOH HOH . D 4 HOH A 76 536 536 HOH HOH . D 4 HOH A 77 537 537 HOH HOH . D 4 HOH A 78 538 538 HOH HOH . D 4 HOH A 79 539 539 HOH HOH . D 4 HOH A 80 540 540 HOH HOH . D 4 HOH A 81 541 541 HOH HOH . D 4 HOH A 82 542 542 HOH HOH . D 4 HOH A 83 543 543 HOH HOH . D 4 HOH A 84 544 544 HOH HOH . D 4 HOH A 85 545 545 HOH HOH . D 4 HOH A 86 546 546 HOH HOH . D 4 HOH A 87 547 547 HOH HOH . D 4 HOH A 88 548 548 HOH HOH . D 4 HOH A 89 549 549 HOH HOH . D 4 HOH A 90 550 550 HOH HOH . D 4 HOH A 91 551 551 HOH HOH . D 4 HOH A 92 552 552 HOH HOH . D 4 HOH A 93 553 553 HOH HOH . D 4 HOH A 94 554 554 HOH HOH . D 4 HOH A 95 555 555 HOH HOH . D 4 HOH A 96 556 556 HOH HOH . D 4 HOH A 97 557 557 HOH HOH . D 4 HOH A 98 558 558 HOH HOH . D 4 HOH A 99 559 559 HOH HOH . D 4 HOH A 100 560 560 HOH HOH . D 4 HOH A 101 561 561 HOH HOH . D 4 HOH A 102 562 562 HOH HOH . D 4 HOH A 103 563 563 HOH HOH . D 4 HOH A 104 565 565 HOH HOH . D 4 HOH A 105 566 566 HOH HOH . D 4 HOH A 106 567 567 HOH HOH . D 4 HOH A 107 568 568 HOH HOH . D 4 HOH A 108 569 569 HOH HOH . D 4 HOH A 109 570 570 HOH HOH . D 4 HOH A 110 571 571 HOH HOH . D 4 HOH A 111 572 572 HOH HOH . D 4 HOH A 112 573 573 HOH HOH . D 4 HOH A 113 574 574 HOH HOH . D 4 HOH A 114 576 576 HOH HOH . D 4 HOH A 115 577 577 HOH HOH . D 4 HOH A 116 579 579 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . C 3 36.878 -32.064 12.432 0.94 32.69 ? PG GSP 355 A 1 HETATM 2 O O3B GSP . . . C 3 37.137 -31.225 10.93 0.94 23.11 ? O3B GSP 355 A 1 HETATM 3 S S1G GSP . . . C 3 38.51 -32.631 13.271 0.94 34.52 ? S1G GSP 355 A 1 HETATM 4 O O2G GSP . . . C 3 36.135 -31.076 13.284 0.94 29.59 ? O2G GSP 355 A 1 HETATM 5 O O3G GSP . . . C 3 36.096 -33.33 12.169 0.94 30.62 ? O3G GSP 355 A 1 HETATM 6 P PB GSP . . . C 3 36.092 -30.433 9.903 0.94 15.3 ? PB GSP 355 A 1 HETATM 7 O O1B GSP . . . C 3 35.585 -31.47 8.976 0.94 14.55 ? O1B GSP 355 A 1 HETATM 8 O O2B GSP . . . C 3 35.123 -29.535 10.6 0.94 16.3 ? O2B GSP 355 A 1 HETATM 9 P PA GSP . . . C 3 37.169 -27.892 9.286 0.94 17.52 ? PA GSP 355 A 1 HETATM 10 O O1A GSP . . . C 3 36.021 -27.112 8.795 0.94 16.3 ? O1A GSP 355 A 1 HETATM 11 O O2A GSP . . . C 3 37.722 -27.669 10.659 0.94 20.47 ? O2A GSP 355 A 1 HETATM 12 O O3A GSP . . . C 3 37.006 -29.441 9.111 0.94 14.17 ? O3A GSP 355 A 1 HETATM 13 O O5' GSP . . . C 3 38.376 -27.662 8.234 0.94 17.44 ? O5' GSP 355 A 1 HETATM 14 C C5' GSP . . . C 3 39.75 -27.947 8.649 0.94 19.76 ? C5' GSP 355 A 1 HETATM 15 C C4' GSP . . . C 3 40.681 -26.797 8.244 0.94 20.07 ? C4' GSP 355 A 1 HETATM 16 O O4' GSP . . . C 3 40.599 -26.82 6.812 0.94 19.1 ? O4' GSP 355 A 1 HETATM 17 C C3' GSP . . . C 3 40.285 -25.361 8.697 0.94 19.26 ? C3' GSP 355 A 1 HETATM 18 O O3' GSP . . . C 3 41.447 -24.533 8.848 0.94 22.04 ? O3' GSP 355 A 1 HETATM 19 C C2' GSP . . . C 3 39.537 -24.749 7.548 0.94 20.36 ? C2' GSP 355 A 1 HETATM 20 O O2' GSP . . . C 3 39.703 -23.375 7.336 0.94 18.89 ? O2' GSP 355 A 1 HETATM 21 C C1' GSP . . . C 3 40.074 -25.497 6.299 0.94 20.39 ? C1' GSP 355 A 1 HETATM 22 N N9 GSP . . . C 3 39.131 -25.504 5.107 0.94 18.41 ? N9 GSP 355 A 1 HETATM 23 C C8 GSP . . . C 3 37.88 -25.996 4.928 0.94 19.65 ? C8 GSP 355 A 1 HETATM 24 N N7 GSP . . . C 3 37.352 -25.857 3.697 0.94 21.04 ? N7 GSP 355 A 1 HETATM 25 C C5 GSP . . . C 3 38.465 -25.428 2.975 0.94 20.85 ? C5 GSP 355 A 1 HETATM 26 C C6 GSP . . . C 3 38.618 -25.214 1.562 0.94 23.85 ? C6 GSP 355 A 1 HETATM 27 O O6 GSP . . . C 3 37.855 -25.569 0.662 0.94 20.83 ? O6 GSP 355 A 1 HETATM 28 N N1 GSP . . . C 3 39.845 -24.607 1.262 0.94 22.57 ? N1 GSP 355 A 1 HETATM 29 C C2 GSP . . . C 3 40.886 -24.418 2.177 0.94 22.76 ? C2 GSP 355 A 1 HETATM 30 N N2 GSP . . . C 3 41.903 -23.648 1.772 0.94 19.32 ? N2 GSP 355 A 1 HETATM 31 N N3 GSP . . . C 3 40.797 -24.801 3.471 0.94 19.08 ? N3 GSP 355 A 1 HETATM 32 C C4 GSP . . . C 3 39.542 -25.215 3.806 0.94 19.39 ? C4 GSP 355 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #