data_1BI9 # _model_server_result.job_id 8WFj-22_kk0pjFg_10RF2Q _model_server_result.datetime_utc '2024-11-17 04:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 1BI9 # _exptl.entry_id 1BI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BI9 _cell.length_a 149.8 _cell.length_b 167.3 _cell.length_c 107.5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 167.3 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 I N N ? 2 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 191 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 192 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id O2B _struct_conn.ptnr2_label_comp_id NAD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id NAD _struct_conn.ptnr2_auth_seq_id 703 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.485 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BI9 _atom_sites.fract_transf_matrix[1][1] 0.006676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 701 701 NAD NAD . F 2 NAD B 1 702 702 NAD NAD . G 3 CL C 1 503 503 CL CL . H 3 CL C 1 504 504 CL CL . I 2 NAD C 1 703 703 NAD NAD . J 2 NAD D 1 704 704 NAD NAD . K 4 HOH A 1 702 10 HOH HOH . K 4 HOH A 2 703 15 HOH HOH . K 4 HOH A 3 704 16 HOH HOH . K 4 HOH A 4 705 25 HOH HOH . K 4 HOH A 5 706 27 HOH HOH . K 4 HOH A 6 707 34 HOH HOH . K 4 HOH A 7 708 48 HOH HOH . K 4 HOH A 8 709 68 HOH HOH . K 4 HOH A 9 710 69 HOH HOH . K 4 HOH A 10 711 71 HOH HOH . K 4 HOH A 11 712 72 HOH HOH . K 4 HOH A 12 713 81 HOH HOH . K 4 HOH A 13 714 91 HOH HOH . K 4 HOH A 14 715 93 HOH HOH . K 4 HOH A 15 716 94 HOH HOH . K 4 HOH A 16 717 95 HOH HOH . K 4 HOH A 17 718 98 HOH HOH . K 4 HOH A 18 719 101 HOH HOH . K 4 HOH A 19 720 108 HOH HOH . K 4 HOH A 20 721 116 HOH HOH . K 4 HOH A 21 722 128 HOH HOH . K 4 HOH A 22 723 129 HOH HOH . K 4 HOH A 23 724 151 HOH HOH . K 4 HOH A 24 725 152 HOH HOH . K 4 HOH A 25 726 157 HOH HOH . K 4 HOH A 26 727 167 HOH HOH . K 4 HOH A 27 728 171 HOH HOH . K 4 HOH A 28 729 182 HOH HOH . K 4 HOH A 29 730 184 HOH HOH . K 4 HOH A 30 731 190 HOH HOH . K 4 HOH A 31 732 195 HOH HOH . K 4 HOH A 32 733 199 HOH HOH . K 4 HOH A 33 734 207 HOH HOH . K 4 HOH A 34 735 208 HOH HOH . K 4 HOH A 35 736 212 HOH HOH . K 4 HOH A 36 737 219 HOH HOH . K 4 HOH A 37 738 223 HOH HOH . L 4 HOH B 1 703 4 HOH HOH . L 4 HOH B 2 704 5 HOH HOH . L 4 HOH B 3 705 7 HOH HOH . L 4 HOH B 4 706 12 HOH HOH . L 4 HOH B 5 707 13 HOH HOH . L 4 HOH B 6 708 19 HOH HOH . L 4 HOH B 7 709 30 HOH HOH . L 4 HOH B 8 710 32 HOH HOH . L 4 HOH B 9 711 35 HOH HOH . L 4 HOH B 10 712 36 HOH HOH . L 4 HOH B 11 713 37 HOH HOH . L 4 HOH B 12 714 44 HOH HOH . L 4 HOH B 13 715 45 HOH HOH . L 4 HOH B 14 716 49 HOH HOH . L 4 HOH B 15 717 50 HOH HOH . L 4 HOH B 16 718 52 HOH HOH . L 4 HOH B 17 719 73 HOH HOH . L 4 HOH B 18 720 77 HOH HOH . L 4 HOH B 19 721 87 HOH HOH . L 4 HOH B 20 722 88 HOH HOH . L 4 HOH B 21 723 96 HOH HOH . L 4 HOH B 22 724 99 HOH HOH . L 4 HOH B 23 725 105 HOH HOH . L 4 HOH B 24 726 106 HOH HOH . L 4 HOH B 25 727 115 HOH HOH . L 4 HOH B 26 728 117 HOH HOH . L 4 HOH B 27 729 119 HOH HOH . L 4 HOH B 28 730 120 HOH HOH . L 4 HOH B 29 731 123 HOH HOH . L 4 HOH B 30 732 125 HOH HOH . L 4 HOH B 31 733 133 HOH HOH . L 4 HOH B 32 734 137 HOH HOH . L 4 HOH B 33 735 139 HOH HOH . L 4 HOH B 34 736 144 HOH HOH . L 4 HOH B 35 737 148 HOH HOH . L 4 HOH B 36 738 155 HOH HOH . L 4 HOH B 37 739 156 HOH HOH . L 4 HOH B 38 740 162 HOH HOH . L 4 HOH B 39 741 164 HOH HOH . L 4 HOH B 40 742 166 HOH HOH . L 4 HOH B 41 743 172 HOH HOH . L 4 HOH B 42 744 178 HOH HOH . L 4 HOH B 43 745 179 HOH HOH . L 4 HOH B 44 746 187 HOH HOH . L 4 HOH B 45 747 191 HOH HOH . L 4 HOH B 46 748 192 HOH HOH . L 4 HOH B 47 749 210 HOH HOH . L 4 HOH B 48 750 214 HOH HOH . L 4 HOH B 49 751 216 HOH HOH . L 4 HOH B 50 752 217 HOH HOH . L 4 HOH B 51 753 218 HOH HOH . L 4 HOH B 52 754 221 HOH HOH . L 4 HOH B 53 755 222 HOH HOH . M 4 HOH C 1 704 1 HOH HOH . M 4 HOH C 2 705 6 HOH HOH . M 4 HOH C 3 706 9 HOH HOH . M 4 HOH C 4 707 17 HOH HOH . M 4 HOH C 5 708 18 HOH HOH . M 4 HOH C 6 709 21 HOH HOH . M 4 HOH C 7 710 28 HOH HOH . M 4 HOH C 8 711 38 HOH HOH . M 4 HOH C 9 712 40 HOH HOH . M 4 HOH C 10 713 43 HOH HOH . M 4 HOH C 11 714 51 HOH HOH . M 4 HOH C 12 715 56 HOH HOH . M 4 HOH C 13 716 57 HOH HOH . M 4 HOH C 14 717 58 HOH HOH . M 4 HOH C 15 718 59 HOH HOH . M 4 HOH C 16 719 60 HOH HOH . M 4 HOH C 17 720 64 HOH HOH . M 4 HOH C 18 721 65 HOH HOH . M 4 HOH C 19 722 70 HOH HOH . M 4 HOH C 20 723 75 HOH HOH . M 4 HOH C 21 724 76 HOH HOH . M 4 HOH C 22 725 78 HOH HOH . M 4 HOH C 23 726 82 HOH HOH . M 4 HOH C 24 727 84 HOH HOH . M 4 HOH C 25 728 86 HOH HOH . M 4 HOH C 26 729 89 HOH HOH . M 4 HOH C 27 730 90 HOH HOH . M 4 HOH C 28 731 97 HOH HOH . M 4 HOH C 29 732 100 HOH HOH . M 4 HOH C 30 733 102 HOH HOH . M 4 HOH C 31 734 103 HOH HOH . M 4 HOH C 32 735 104 HOH HOH . M 4 HOH C 33 736 107 HOH HOH . M 4 HOH C 34 737 111 HOH HOH . M 4 HOH C 35 738 112 HOH HOH . M 4 HOH C 36 739 113 HOH HOH . M 4 HOH C 37 740 118 HOH HOH . M 4 HOH C 38 741 122 HOH HOH . M 4 HOH C 39 742 124 HOH HOH . M 4 HOH C 40 743 126 HOH HOH . M 4 HOH C 41 744 127 HOH HOH . M 4 HOH C 42 745 130 HOH HOH . M 4 HOH C 43 746 134 HOH HOH . M 4 HOH C 44 747 135 HOH HOH . M 4 HOH C 45 748 136 HOH HOH . M 4 HOH C 46 749 138 HOH HOH . M 4 HOH C 47 750 143 HOH HOH . M 4 HOH C 48 751 150 HOH HOH . M 4 HOH C 49 752 161 HOH HOH . M 4 HOH C 50 753 163 HOH HOH . M 4 HOH C 51 754 165 HOH HOH . M 4 HOH C 52 755 169 HOH HOH . M 4 HOH C 53 756 174 HOH HOH . M 4 HOH C 54 757 175 HOH HOH . M 4 HOH C 55 758 177 HOH HOH . M 4 HOH C 56 759 180 HOH HOH . M 4 HOH C 57 760 183 HOH HOH . M 4 HOH C 58 761 186 HOH HOH . M 4 HOH C 59 762 188 HOH HOH . M 4 HOH C 60 763 189 HOH HOH . M 4 HOH C 61 764 193 HOH HOH . M 4 HOH C 62 765 194 HOH HOH . M 4 HOH C 63 766 196 HOH HOH . M 4 HOH C 64 767 198 HOH HOH . M 4 HOH C 65 768 200 HOH HOH . M 4 HOH C 66 769 203 HOH HOH . M 4 HOH C 67 770 206 HOH HOH . M 4 HOH C 68 771 209 HOH HOH . N 4 HOH D 1 705 2 HOH HOH . N 4 HOH D 2 706 3 HOH HOH . N 4 HOH D 3 707 8 HOH HOH . N 4 HOH D 4 708 11 HOH HOH . N 4 HOH D 5 709 14 HOH HOH . N 4 HOH D 6 710 20 HOH HOH . N 4 HOH D 7 711 22 HOH HOH . N 4 HOH D 8 712 23 HOH HOH . N 4 HOH D 9 713 24 HOH HOH . N 4 HOH D 10 714 26 HOH HOH . N 4 HOH D 11 715 29 HOH HOH . N 4 HOH D 12 716 31 HOH HOH . N 4 HOH D 13 717 33 HOH HOH . N 4 HOH D 14 718 39 HOH HOH . N 4 HOH D 15 719 41 HOH HOH . N 4 HOH D 16 720 42 HOH HOH . N 4 HOH D 17 721 46 HOH HOH . N 4 HOH D 18 722 47 HOH HOH . N 4 HOH D 19 723 53 HOH HOH . N 4 HOH D 20 724 54 HOH HOH . N 4 HOH D 21 725 55 HOH HOH . N 4 HOH D 22 726 61 HOH HOH . N 4 HOH D 23 727 62 HOH HOH . N 4 HOH D 24 728 63 HOH HOH . N 4 HOH D 25 729 66 HOH HOH . N 4 HOH D 26 730 67 HOH HOH . N 4 HOH D 27 731 74 HOH HOH . N 4 HOH D 28 732 79 HOH HOH . N 4 HOH D 29 733 80 HOH HOH . N 4 HOH D 30 734 83 HOH HOH . N 4 HOH D 31 735 85 HOH HOH . N 4 HOH D 32 736 92 HOH HOH . N 4 HOH D 33 737 109 HOH HOH . N 4 HOH D 34 738 110 HOH HOH . N 4 HOH D 35 739 114 HOH HOH . N 4 HOH D 36 740 121 HOH HOH . N 4 HOH D 37 741 131 HOH HOH . N 4 HOH D 38 742 132 HOH HOH . N 4 HOH D 39 743 140 HOH HOH . N 4 HOH D 40 744 141 HOH HOH . N 4 HOH D 41 745 142 HOH HOH . N 4 HOH D 42 746 145 HOH HOH . N 4 HOH D 43 747 146 HOH HOH . N 4 HOH D 44 748 147 HOH HOH . N 4 HOH D 45 749 149 HOH HOH . N 4 HOH D 46 750 153 HOH HOH . N 4 HOH D 47 751 154 HOH HOH . N 4 HOH D 48 752 158 HOH HOH . N 4 HOH D 49 753 159 HOH HOH . N 4 HOH D 50 754 160 HOH HOH . N 4 HOH D 51 755 168 HOH HOH . N 4 HOH D 52 756 170 HOH HOH . N 4 HOH D 53 757 173 HOH HOH . N 4 HOH D 54 758 176 HOH HOH . N 4 HOH D 55 759 181 HOH HOH . N 4 HOH D 56 760 185 HOH HOH . N 4 HOH D 57 761 197 HOH HOH . N 4 HOH D 58 762 201 HOH HOH . N 4 HOH D 59 763 202 HOH HOH . N 4 HOH D 60 764 204 HOH HOH . N 4 HOH D 61 765 205 HOH HOH . N 4 HOH D 62 766 211 HOH HOH . N 4 HOH D 63 767 213 HOH HOH . N 4 HOH D 64 768 215 HOH HOH . N 4 HOH D 65 769 220 HOH HOH . N 4 HOH D 66 770 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 2 -10.134 10.726 39.592 1 57.44 ? PA NAD 702 B 1 HETATM 2 O O1A NAD . . . F 2 -8.979 10.93 38.679 1 57.44 ? O1A NAD 702 B 1 HETATM 3 O O2A NAD . . . F 2 -10.464 9.316 40.099 1 57.44 ? O2A NAD 702 B 1 HETATM 4 O O5B NAD . . . F 2 -11.429 11.38 38.982 1 57.44 ? O5B NAD 702 B 1 HETATM 5 C C5B NAD . . . F 2 -11.392 12.595 38.3 1 57.44 ? C5B NAD 702 B 1 HETATM 6 C C4B NAD . . . F 2 -12.054 12.495 36.963 1 57.44 ? C4B NAD 702 B 1 HETATM 7 O O4B NAD . . . F 2 -11.14 11.663 36.248 1 57.44 ? O4B NAD 702 B 1 HETATM 8 C C3B NAD . . . F 2 -13.465 11.88 36.886 1 57.44 ? C3B NAD 702 B 1 HETATM 9 O O3B NAD . . . F 2 -14.325 12.523 35.894 1 57.44 ? O3B NAD 702 B 1 HETATM 10 C C2B NAD . . . F 2 -13.196 10.438 36.532 1 57.44 ? C2B NAD 702 B 1 HETATM 11 O O2B NAD . . . F 2 -14.296 9.735 35.946 1 57.44 ? O2B NAD 702 B 1 HETATM 12 C C1B NAD . . . F 2 -11.966 10.592 35.618 1 57.44 ? C1B NAD 702 B 1 HETATM 13 N N9A NAD . . . F 2 -11.177 9.279 35.395 1 57.44 ? N9A NAD 702 B 1 HETATM 14 C C8A NAD . . . F 2 -10.934 8.225 36.273 1 57.44 ? C8A NAD 702 B 1 HETATM 15 N N7A NAD . . . F 2 -10.004 7.38 35.823 1 57.44 ? N7A NAD 702 B 1 HETATM 16 C C5A NAD . . . F 2 -9.813 7.803 34.581 1 57.44 ? C5A NAD 702 B 1 HETATM 17 C C6A NAD . . . F 2 -8.949 7.19 33.597 1 57.44 ? C6A NAD 702 B 1 HETATM 18 N N6A NAD . . . F 2 -8.402 5.994 33.842 1 57.44 ? N6A NAD 702 B 1 HETATM 19 N N1A NAD . . . F 2 -8.73 7.9 32.381 1 57.44 ? N1A NAD 702 B 1 HETATM 20 C C2A NAD . . . F 2 -9.491 9.002 32.068 1 57.44 ? C2A NAD 702 B 1 HETATM 21 N N3A NAD . . . F 2 -10.438 9.476 32.937 1 57.44 ? N3A NAD 702 B 1 HETATM 22 C C4A NAD . . . F 2 -10.547 8.973 34.26 1 57.44 ? C4A NAD 702 B 1 HETATM 23 O O3 NAD . . . F 2 -9.974 11.581 40.948 1 57.44 ? O3 NAD 702 B 1 HETATM 24 P PN NAD . . . F 2 -10.91 11.516 42.293 1 57.44 ? PN NAD 702 B 1 HETATM 25 O O1N NAD . . . F 2 -10.968 10.069 42.738 1 57.44 ? O1N NAD 702 B 1 HETATM 26 O O2N NAD . . . F 2 -12.221 12.258 42.078 1 57.44 ? O2N NAD 702 B 1 HETATM 27 O O5D NAD . . . F 2 -10.091 12.331 43.471 1 57.44 ? O5D NAD 702 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #