data_1BIK # _model_server_result.job_id VAx8E-HR6CETgTmzzqwwng _model_server_result.datetime_utc '2025-03-05 02:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":148}' # _entry.id 1BIK # _exptl.entry_id 1BIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BIK _cell.length_a 55.3 _cell.length_b 55.3 _cell.length_c 146.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 35 A CYS 35 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf3 A SG CYS 51 A CYS 51 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 82 A CYS 82 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 91 A CYS 91 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 107 A CYS 107 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 B C1 NAG . A NAG 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 216 n n C1 O1 NAG sing 217 n n C1 O5 NAG sing 218 n n C1 H1 NAG sing 219 n n C2 C3 NAG sing 220 n n C2 N2 NAG sing 221 n n C2 H2 NAG sing 222 n n C3 C4 NAG sing 223 n n C3 O3 NAG sing 224 n n C3 H3 NAG sing 225 n n C4 C5 NAG sing 226 n n C4 O4 NAG sing 227 n n C4 H4 NAG sing 228 n n C5 C6 NAG sing 229 n n C5 O5 NAG sing 230 n n C5 H5 NAG sing 231 n n C6 O6 NAG sing 232 n n C6 H61 NAG sing 233 n n C6 H62 NAG sing 234 n n C7 C8 NAG sing 235 n n C7 N2 NAG sing 236 n n C7 O7 NAG doub 237 n n C8 H81 NAG sing 238 n n C8 H82 NAG sing 239 n n C8 H83 NAG sing 240 n n N2 HN2 NAG sing 241 n n O1 HO1 NAG sing 242 n n O3 HO3 NAG sing 243 n n O4 HO4 NAG sing 244 n n O6 HO6 NAG sing 245 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1BIK _atom_sites.fract_transf_matrix[1][1] 0.018083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 148 45 NAG NAG . C 3 SO4 A 1 149 135 SO4 SO4 . D 3 SO4 A 1 150 136 SO4 SO4 . E 4 HOH A 1 151 140 HOH HOH . E 4 HOH A 2 152 141 HOH HOH . E 4 HOH A 3 153 142 HOH HOH . E 4 HOH A 4 154 143 HOH HOH . E 4 HOH A 5 155 144 HOH HOH . E 4 HOH A 6 156 145 HOH HOH . E 4 HOH A 7 157 146 HOH HOH . E 4 HOH A 8 158 147 HOH HOH . E 4 HOH A 9 159 148 HOH HOH . E 4 HOH A 10 160 149 HOH HOH . E 4 HOH A 11 161 150 HOH HOH . E 4 HOH A 12 162 151 HOH HOH . E 4 HOH A 13 163 152 HOH HOH . E 4 HOH A 14 164 153 HOH HOH . E 4 HOH A 15 165 154 HOH HOH . E 4 HOH A 16 166 155 HOH HOH . E 4 HOH A 17 167 156 HOH HOH . E 4 HOH A 18 168 157 HOH HOH . E 4 HOH A 19 169 158 HOH HOH . E 4 HOH A 20 170 159 HOH HOH . E 4 HOH A 21 171 160 HOH HOH . E 4 HOH A 22 172 161 HOH HOH . E 4 HOH A 23 173 162 HOH HOH . E 4 HOH A 24 174 163 HOH HOH . E 4 HOH A 25 175 164 HOH HOH . E 4 HOH A 26 176 165 HOH HOH . E 4 HOH A 27 177 166 HOH HOH . E 4 HOH A 28 178 167 HOH HOH . E 4 HOH A 29 179 168 HOH HOH . E 4 HOH A 30 180 169 HOH HOH . E 4 HOH A 31 181 170 HOH HOH . E 4 HOH A 32 182 171 HOH HOH . E 4 HOH A 33 183 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 2.31 32.906 4.809 1 42.93 ? C1 NAG 148 A 1 HETATM 2 C C2 NAG . . . B 2 1.241 31.885 4.502 1 47.82 ? C2 NAG 148 A 1 HETATM 3 C C3 NAG . . . B 2 -0.151 32.492 4.569 1 54.55 ? C3 NAG 148 A 1 HETATM 4 C C4 NAG . . . B 2 -0.354 33.219 5.887 1 56.1 ? C4 NAG 148 A 1 HETATM 5 C C5 NAG . . . B 2 0.806 34.182 6.147 1 53.75 ? C5 NAG 148 A 1 HETATM 6 C C6 NAG . . . B 2 0.716 34.774 7.531 1 53.83 ? C6 NAG 148 A 1 HETATM 7 C C7 NAG . . . B 2 1.328 30.055 2.976 1 46.22 ? C7 NAG 148 A 1 HETATM 8 C C8 NAG . . . B 2 1.56 29.572 1.559 1 48.59 ? C8 NAG 148 A 1 HETATM 9 N N2 NAG . . . B 2 1.454 31.359 3.176 1 43.12 ? N2 NAG 148 A 1 HETATM 10 O O3 NAG . . . B 2 -1.122 31.46 4.446 1 57.01 ? O3 NAG 148 A 1 HETATM 11 O O4 NAG . . . B 2 -1.588 33.935 5.847 1 60.53 ? O4 NAG 148 A 1 HETATM 12 O O5 NAG . . . B 2 2.063 33.482 6.087 1 47.78 ? O5 NAG 148 A 1 HETATM 13 O O6 NAG . . . B 2 0.96 33.772 8.503 1 63.85 ? O6 NAG 148 A 1 HETATM 14 O O7 NAG . . . B 2 1.072 29.251 3.886 1 45.56 ? O7 NAG 148 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #