data_1BIM # _model_server_result.job_id 3JcnDz5ltU7f1nfWoIYu9g _model_server_result.datetime_utc '2024-11-22 06:56:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":391}' # _entry.id 1BIM # _exptl.entry_id 1BIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 682.916 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-[(2-amino-1,3-thiazol-4-yl)methyl]-N~1~-{(1S,2S)-1-(cyclohexylmethyl)-2-hydroxy-2-[(3R)-1,5,5-trimethyl-2-oxopyrrolidin-3-yl]ethyl}-N~4~-[2-(dimethylamino)-2-oxoethyl]-N~4~-[(1S)-1-phenylethyl]butanediamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BIM _cell.length_a 142.9 _cell.length_b 142.9 _cell.length_c 142.9 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 45 1_555 A SG CYS 55 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? disulf ? disulf2 A SG CYS 214 A CYS 206 1_555 A SG CYS 218 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 256 A CYS 249 1_555 A SG CYS 293 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 48 B CYS 45 1_555 B SG CYS 55 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf5 B SG CYS 214 B CYS 206 1_555 B SG CYS 218 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 B SG CYS 256 B CYS 249 1_555 B SG CYS 293 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C36 H54 N6 O5 S' _chem_comp.formula_weight 682.916 _chem_comp.id 0QB _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-[(2-amino-1,3-thiazol-4-yl)methyl]-N~1~-{(1S,2S)-1-(cyclohexylmethyl)-2-hydroxy-2-[(3R)-1,5,5-trimethyl-2-oxopyrrolidin-3-yl]ethyl}-N~4~-[2-(dimethylamino)-2-oxoethyl]-N~4~-[(1S)-1-phenylethyl]butanediamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'P2-P3 butanediamide renin inhibitor (3)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N 0QB sing 1 n n C1 H11 0QB sing 2 n n C1 H12 0QB sing 3 n n C1 H13 0QB sing 4 n n C2 N 0QB sing 5 n n C2 H21 0QB sing 6 n n C2 H22 0QB sing 7 n n C2 H23 0QB sing 8 n n C O 0QB doub 9 n n C N 0QB sing 10 n n N1 C3 0QB sing 11 n n N1 CA 0QB sing 12 n n N1 CB 0QB sing 13 n n C3 O1 0QB doub 14 n n CA HA2 0QB sing 15 n n CA HA3 0QB sing 16 n n CB CG2 0QB sing 17 n n CB CG 0QB sing 18 n n CB HB 0QB sing 19 n n CG2 HG21 0QB sing 20 n n CG2 HG22 0QB sing 21 n n CG2 HG23 0QB sing 22 n n CG CD1 0QB doub 23 n y CG CD2 0QB sing 24 n y CD1 CE1 0QB sing 25 n y CD1 HD1 0QB sing 26 n n CD2 CE2 0QB doub 27 n y CD2 HD2 0QB sing 28 n n CE1 CZ 0QB doub 29 n y CE1 HE1 0QB sing 30 n n CE2 CZ 0QB sing 31 n y CE2 HE2 0QB sing 32 n n CZ HZ 0QB sing 33 n n C4 O2 0QB doub 34 n n C4 CA1 0QB sing 35 n n CA1 CN 0QB sing 36 n n CA1 CB1 0QB sing 37 n n CA1 HA 0QB sing 38 n n CN HN2 0QB sing 39 n n CN HN3 0QB sing 40 n n CB1 CG1 0QB sing 41 n n CB1 HB1 0QB sing 42 n n CB1 HB2 0QB sing 43 n n CG1 CD21 0QB doub 44 n y CG1 ND1 0QB sing 45 n y CD21 SE2 0QB sing 46 n y CD21 HD21 0QB sing 47 n n SE2 CE11 0QB sing 48 n y CE11 ND1 0QB doub 49 n y CE11 NZ 0QB sing 50 n n NZ HNZ1 0QB sing 51 n n NZ HNZ2 0QB sing 52 n n C11 C21 0QB sing 53 n n C11 O11 0QB sing 54 n n C11 H121 0QB sing 55 n n C21 C31 0QB sing 56 n n C21 N2 0QB sing 57 n n C21 H2 0QB sing 58 n n C31 C1' 0QB sing 59 n n C31 H31 0QB sing 60 n n C31 H32 0QB sing 61 n n C1' C2' 0QB sing 62 n n C1' C6' 0QB sing 63 n n C1' H1' 0QB sing 64 n n C2' C3' 0QB sing 65 n n C2' "H2'1" 0QB sing 66 n n C2' "H2'2" 0QB sing 67 n n C3' C4' 0QB sing 68 n n C3' "H3'1" 0QB sing 69 n n C3' "H3'2" 0QB sing 70 n n C4' C5' 0QB sing 71 n n C4' "H4'1" 0QB sing 72 n n C4' "H4'2" 0QB sing 73 n n C5' C6' 0QB sing 74 n n C5' "H5'1" 0QB sing 75 n n C5' "H5'2" 0QB sing 76 n n C6' "H6'1" 0QB sing 77 n n C6' "H6'2" 0QB sing 78 n n N2 HN22 0QB sing 79 n n O11 HO1 0QB sing 80 n n N11 C22 0QB sing 81 n n N11 C5 0QB sing 82 n n N11 CM1 0QB sing 83 n n C22 O21 0QB doub 84 n n C22 C32 0QB sing 85 n n C32 C41 0QB sing 86 n n C32 H321 0QB sing 87 n n C41 C5 0QB sing 88 n n C41 H41 0QB sing 89 n n C41 H42 0QB sing 90 n n C5 CM2 0QB sing 91 n n C5 CM3 0QB sing 92 n n CM1 HM11 0QB sing 93 n n CM1 HM12 0QB sing 94 n n CM1 HM13 0QB sing 95 n n CM2 HM21 0QB sing 96 n n CM2 HM22 0QB sing 97 n n CM2 HM23 0QB sing 98 n n CM3 HM31 0QB sing 99 n n CM3 HM32 0QB sing 100 n n CM3 HM33 0QB sing 101 n n C CA 0QB sing 102 n n C3 CN 0QB sing 103 n n C4 N2 0QB sing 104 n n C11 C32 0QB sing 105 n n # _atom_sites.entry_id 1BIM _atom_sites.fract_transf_matrix[1][1] 0.006998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0QB A 1 391 391 0QB DMF . D 2 0QB B 1 391 391 0QB DMF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0QB . . . D 2 58.643 83.469 70.162 1 10 ? C1 0QB 391 B 1 HETATM 2 C C2 0QB . . . D 2 60.3 84.217 71.896 1 10 ? C2 0QB 391 B 1 HETATM 3 C C 0QB . . . D 2 59.155 85.853 70.449 1 10 ? C 0QB 391 B 1 HETATM 4 O O 0QB . . . D 2 59.722 86.772 70.999 1 10 ? O 0QB 391 B 1 HETATM 5 N N 0QB . . . D 2 59.356 84.549 70.83 1 10 ? N 0QB 391 B 1 HETATM 6 N N1 0QB . . . D 2 58.034 87.579 69.131 1 10 ? N1 0QB 391 B 1 HETATM 7 C C3 0QB . . . D 2 57.044 88.077 69.903 1 10 ? C3 0QB 391 B 1 HETATM 8 O O1 0QB . . . D 2 56.454 87.322 70.662 1 10 ? O1 0QB 391 B 1 HETATM 9 C CA 0QB . . . D 2 58.267 86.139 69.249 1 10 ? CA 0QB 391 B 1 HETATM 10 C CB 0QB . . . D 2 58.767 88.493 68.215 1 10 ? CB 0QB 391 B 1 HETATM 11 C CG2 0QB . . . D 2 60.086 87.916 67.66 1 10 ? CG2 0QB 391 B 1 HETATM 12 C CG 0QB . . . D 2 58.189 88.473 66.774 1 10 ? CG 0QB 391 B 1 HETATM 13 C CD1 0QB . . . D 2 57.834 89.631 66.2 1 10 ? CD1 0QB 391 B 1 HETATM 14 C CD2 0QB . . . D 2 58.103 87.317 66.098 1 10 ? CD2 0QB 391 B 1 HETATM 15 C CE1 0QB . . . D 2 57.362 89.608 64.957 1 10 ? CE1 0QB 391 B 1 HETATM 16 C CE2 0QB . . . D 2 57.648 87.298 64.847 1 10 ? CE2 0QB 391 B 1 HETATM 17 C CZ 0QB . . . D 2 57.248 88.44 64.283 1 10 ? CZ 0QB 391 B 1 HETATM 18 C C4 0QB . . . D 2 56.053 91.596 70.823 1 10 ? C4 0QB 391 B 1 HETATM 19 O O2 0QB . . . D 2 57.05 92.28 70.68 1 10 ? O2 0QB 391 B 1 HETATM 20 C CA1 0QB . . . D 2 56.254 90.134 71.112 1 10 ? CA1 0QB 391 B 1 HETATM 21 C CN 0QB . . . D 2 56.691 89.563 69.772 1 10 ? CN 0QB 391 B 1 HETATM 22 C CB1 0QB . . . D 2 57.416 90.043 72.055 1 10 ? CB1 0QB 391 B 1 HETATM 23 C CG1 0QB . . . D 2 56.939 90.262 73.493 1 10 ? CG1 0QB 391 B 1 HETATM 24 C CD21 0QB . . . D 2 56.9 91.452 74.036 1 10 ? CD21 0QB 391 B 1 HETATM 25 S SE2 0QB . . . D 2 56.52 91.342 75.768 1 10 ? SE2 0QB 391 B 1 HETATM 26 C CE11 0QB . . . D 2 56.487 89.617 75.513 1 10 ? CE11 0QB 391 B 1 HETATM 27 N ND1 0QB . . . D 2 56.728 89.247 74.331 1 10 ? ND1 0QB 391 B 1 HETATM 28 N NZ 0QB . . . D 2 56.194 88.806 76.487 1 10 ? NZ 0QB 391 B 1 HETATM 29 C C11 0QB . . . D 2 53.396 93.992 71.341 1 10 ? C11 0QB 391 B 1 HETATM 30 C C21 0QB . . . D 2 54.398 93.426 70.278 1 10 ? C21 0QB 391 B 1 HETATM 31 C C31 0QB . . . D 2 53.675 93.405 68.901 1 10 ? C31 0QB 391 B 1 HETATM 32 C C1' 0QB . . . D 2 54.277 92.336 67.947 1 10 ? C1' 0QB 391 B 1 HETATM 33 C C2' 0QB . . . D 2 53.129 91.561 67.212 1 10 ? C2' 0QB 391 B 1 HETATM 34 C C3' 0QB . . . D 2 53.69 90.653 66.091 1 10 ? C3' 0QB 391 B 1 HETATM 35 C C4' 0QB . . . D 2 54.502 91.538 65.112 1 10 ? C4' 0QB 391 B 1 HETATM 36 C C5' 0QB . . . D 2 55.71 92.184 65.839 1 10 ? C5' 0QB 391 B 1 HETATM 37 C C6' 0QB . . . D 2 55.169 93.119 66.939 1 10 ? C6' 0QB 391 B 1 HETATM 38 N N2 0QB . . . D 2 54.749 92.045 70.637 1 10 ? N2 0QB 391 B 1 HETATM 39 O O11 0QB . . . D 2 52.376 93.006 71.683 1 10 ? O11 0QB 391 B 1 HETATM 40 N N11 0QB . . . D 2 54.563 96.538 73.574 1 10 ? N11 0QB 391 B 1 HETATM 41 C C22 0QB . . . D 2 54.63 95.878 72.393 1 10 ? C22 0QB 391 B 1 HETATM 42 O O21 0QB . . . D 2 54.991 96.417 71.274 1 10 ? O21 0QB 391 B 1 HETATM 43 C C32 0QB . . . D 2 54.224 94.444 72.55 1 10 ? C32 0QB 391 B 1 HETATM 44 C C41 0QB . . . D 2 53.463 94.492 73.907 1 10 ? C41 0QB 391 B 1 HETATM 45 C C5 0QB . . . D 2 54.151 95.69 74.661 1 10 ? C5 0QB 391 B 1 HETATM 46 C CM1 0QB . . . D 2 54.947 97.912 73.726 1 10 ? CM1 0QB 391 B 1 HETATM 47 C CM2 0QB . . . D 2 53.155 96.366 75.647 1 10 ? CM2 0QB 391 B 1 HETATM 48 C CM3 0QB . . . D 2 55.451 95.208 75.404 1 10 ? CM3 0QB 391 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #