data_1BIT
#
_model_server_result.job_id            LKOWuWosLEZ5Gh1sgEUumQ 
_model_server_result.datetime_utc      '2024-11-28 15:36:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":247}' 
#
_entry.id    1BIT 
#
_exptl.entry_id    1BIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BIT 
_cell.length_a            77.09 
_cell.length_b            82.33 
_cell.length_c            31.16 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 151 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf2 A SG CYS 40 A CYS 42 1_555 A SG CYS 56 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
disulf ? disulf3 A SG CYS 124 A CYS 128 1_555 A SG CYS 224 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf4 A SG CYS 131 A CYS 136 1_555 A SG CYS 197 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
disulf ? disulf5 A SG CYS 162 A CYS 168 1_555 A SG CYS 176 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
disulf ? disulf6 A SG CYS 187 A CYS 191 1_555 A SG CYS 211 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc1 A OE1 GLU 67 A GLU 70 1_555 B CA CA . A CA 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc2 A O ASN 69 A ASN 72 1_555 B CA CA . A CA 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc3 A O VAL 72 A VAL 75 1_555 B CA CA . A CA 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc4 A OE1 GLU 74 A GLU 77 1_555 B CA CA . A CA 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc5 A OE2 GLU 77 A GLU 80 1_555 B CA CA . A CA 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc6 B CA CA . A CA 248 1_555 F O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     1BIT 
_atom_sites.fract_transf_matrix[1][1]    0.012972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.032092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 248 248 CA CA . 
C 3 SO4 A 1 249 249 SO4 SO4 . 
D 4 BEN A 1 246 246 BEN BEN . 
E 4 BEN A 1 247 247 BEN BEN . 
F 5 HOH A 1 300 300 HOH HOH . 
F 5 HOH A 2 301 301 HOH HOH . 
F 5 HOH A 3 302 302 HOH HOH . 
F 5 HOH A 4 303 303 HOH HOH . 
F 5 HOH A 5 304 304 HOH HOH . 
F 5 HOH A 6 305 305 HOH HOH . 
F 5 HOH A 7 306 306 HOH HOH . 
F 5 HOH A 8 307 307 HOH HOH . 
F 5 HOH A 9 308 308 HOH HOH . 
F 5 HOH A 10 309 309 HOH HOH . 
F 5 HOH A 11 310 310 HOH HOH . 
F 5 HOH A 12 311 311 HOH HOH . 
F 5 HOH A 13 312 312 HOH HOH . 
F 5 HOH A 14 313 313 HOH HOH . 
F 5 HOH A 15 314 314 HOH HOH . 
F 5 HOH A 16 315 315 HOH HOH . 
F 5 HOH A 17 316 316 HOH HOH . 
F 5 HOH A 18 317 317 HOH HOH . 
F 5 HOH A 19 318 318 HOH HOH . 
F 5 HOH A 20 319 319 HOH HOH . 
F 5 HOH A 21 320 320 HOH HOH . 
F 5 HOH A 22 321 321 HOH HOH . 
F 5 HOH A 23 322 322 HOH HOH . 
F 5 HOH A 24 323 323 HOH HOH . 
F 5 HOH A 25 324 324 HOH HOH . 
F 5 HOH A 26 325 325 HOH HOH . 
F 5 HOH A 27 326 326 HOH HOH . 
F 5 HOH A 28 327 327 HOH HOH . 
F 5 HOH A 29 328 328 HOH HOH . 
F 5 HOH A 30 329 329 HOH HOH . 
F 5 HOH A 31 330 330 HOH HOH . 
F 5 HOH A 32 331 331 HOH HOH . 
F 5 HOH A 33 332 332 HOH HOH . 
F 5 HOH A 34 333 333 HOH HOH . 
F 5 HOH A 35 334 334 HOH HOH . 
F 5 HOH A 36 335 335 HOH HOH . 
F 5 HOH A 37 336 336 HOH HOH . 
F 5 HOH A 38 337 337 HOH HOH . 
F 5 HOH A 39 338 338 HOH HOH . 
F 5 HOH A 40 339 339 HOH HOH . 
F 5 HOH A 41 340 340 HOH HOH . 
F 5 HOH A 42 341 341 HOH HOH . 
F 5 HOH A 43 342 342 HOH HOH . 
F 5 HOH A 44 343 343 HOH HOH . 
F 5 HOH A 45 344 344 HOH HOH . 
F 5 HOH A 46 345 345 HOH HOH . 
F 5 HOH A 47 346 346 HOH HOH . 
F 5 HOH A 48 347 347 HOH HOH . 
F 5 HOH A 49 348 348 HOH HOH . 
F 5 HOH A 50 349 349 HOH HOH . 
F 5 HOH A 51 350 350 HOH HOH . 
F 5 HOH A 52 351 351 HOH HOH . 
F 5 HOH A 53 352 352 HOH HOH . 
F 5 HOH A 54 353 353 HOH HOH . 
F 5 HOH A 55 354 354 HOH HOH . 
F 5 HOH A 56 355 355 HOH HOH . 
F 5 HOH A 57 356 356 HOH HOH . 
F 5 HOH A 58 357 357 HOH HOH . 
F 5 HOH A 59 358 358 HOH HOH . 
F 5 HOH A 60 359 359 HOH HOH . 
F 5 HOH A 61 360 360 HOH HOH . 
F 5 HOH A 62 361 361 HOH HOH . 
F 5 HOH A 63 362 362 HOH HOH . 
F 5 HOH A 64 363 363 HOH HOH . 
F 5 HOH A 65 364 364 HOH HOH . 
F 5 HOH A 66 365 365 HOH HOH . 
F 5 HOH A 67 366 366 HOH HOH . 
F 5 HOH A 68 367 367 HOH HOH . 
F 5 HOH A 69 368 368 HOH HOH . 
F 5 HOH A 70 369 369 HOH HOH . 
F 5 HOH A 71 370 370 HOH HOH . 
F 5 HOH A 72 371 371 HOH HOH . 
F 5 HOH A 73 372 372 HOH HOH . 
F 5 HOH A 74 373 373 HOH HOH . 
F 5 HOH A 75 374 374 HOH HOH . 
F 5 HOH A 76 375 375 HOH HOH . 
F 5 HOH A 77 376 376 HOH HOH . 
F 5 HOH A 78 377 377 HOH HOH . 
F 5 HOH A 79 378 378 HOH HOH . 
F 5 HOH A 80 379 379 HOH HOH . 
F 5 HOH A 81 380 380 HOH HOH . 
F 5 HOH A 82 381 381 HOH HOH . 
F 5 HOH A 83 382 382 HOH HOH . 
F 5 HOH A 84 383 383 HOH HOH . 
F 5 HOH A 85 384 384 HOH HOH . 
F 5 HOH A 86 385 385 HOH HOH . 
F 5 HOH A 87 386 386 HOH HOH . 
F 5 HOH A 88 387 387 HOH HOH . 
F 5 HOH A 89 388 388 HOH HOH . 
F 5 HOH A 90 389 389 HOH HOH . 
F 5 HOH A 91 390 390 HOH HOH . 
F 5 HOH A 92 391 391 HOH HOH . 
F 5 HOH A 93 392 392 HOH HOH . 
F 5 HOH A 94 393 393 HOH HOH . 
F 5 HOH A 95 394 394 HOH HOH . 
F 5 HOH A 96 395 395 HOH HOH . 
F 5 HOH A 97 396 396 HOH HOH . 
F 5 HOH A 98 397 397 HOH HOH . 
F 5 HOH A 99 398 398 HOH HOH . 
F 5 HOH A 100 399 399 HOH HOH . 
F 5 HOH A 101 400 400 HOH HOH . 
F 5 HOH A 102 401 401 HOH HOH . 
F 5 HOH A 103 402 402 HOH HOH . 
F 5 HOH A 104 403 403 HOH HOH . 
F 5 HOH A 105 404 404 HOH HOH . 
F 5 HOH A 106 405 405 HOH HOH . 
F 5 HOH A 107 406 406 HOH HOH . 
F 5 HOH A 108 407 407 HOH HOH . 
F 5 HOH A 109 408 408 HOH HOH . 
F 5 HOH A 110 409 409 HOH HOH . 
F 5 HOH A 111 410 410 HOH HOH . 
F 5 HOH A 112 411 411 HOH HOH . 
F 5 HOH A 113 412 412 HOH HOH . 
F 5 HOH A 114 413 413 HOH HOH . 
F 5 HOH A 115 414 414 HOH HOH . 
F 5 HOH A 116 415 415 HOH HOH . 
F 5 HOH A 117 416 416 HOH HOH . 
F 5 HOH A 118 417 417 HOH HOH . 
F 5 HOH A 119 418 418 HOH HOH . 
F 5 HOH A 120 419 419 HOH HOH . 
F 5 HOH A 121 420 420 HOH HOH . 
F 5 HOH A 122 421 421 HOH HOH . 
F 5 HOH A 123 422 422 HOH HOH . 
F 5 HOH A 124 423 423 HOH HOH . 
F 5 HOH A 125 424 424 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . E 4 57.594 89.508 -20.371 1 14.16 ? C1 BEN 247 A 1 
HETATM 2 C C2 BEN . . . E 4 56.306 89.501 -19.886 1 18.7 ? C2 BEN 247 A 1 
HETATM 3 C C3 BEN . . . E 4 55.296 89.823 -20.721 1 21.78 ? C3 BEN 247 A 1 
HETATM 4 C C4 BEN . . . E 4 55.552 90.137 -22.039 1 18.66 ? C4 BEN 247 A 1 
HETATM 5 C C5 BEN . . . E 4 56.873 90.142 -22.521 1 18.46 ? C5 BEN 247 A 1 
HETATM 6 C C6 BEN . . . E 4 57.921 89.812 -21.691 1 14.86 ? C6 BEN 247 A 1 
HETATM 7 C C BEN . . . E 4 58.604 89.183 -19.407 1 11.08 ? C BEN 247 A 1 
HETATM 8 N N1 BEN . . . E 4 58.315 89.018 -18.113 1 14.19 ? N1 BEN 247 A 1 
HETATM 9 N N2 BEN . . . E 4 59.848 89.082 -19.809 1 13.18 ? N2 BEN 247 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           9 
#