data_1BJE # _model_server_result.job_id J3MX0gg3I3xxKptflAyH4A _model_server_result.datetime_utc '2024-11-16 07:54:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 1BJE # _exptl.entry_id 1BJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.95 _cell.angle_gamma 90 _cell.entry_id 1BJE _cell.length_a 64.019 _cell.length_b 28.812 _cell.length_c 35.84 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 D FE HEM . A HEM 154 1_555 C N1 AZI . A AZI 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 D FE HEM . A HEM 154 1_555 C N2 AZI . A AZI 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 118 n n CHA C4D HEM doub 119 n n CHA HHA HEM sing 120 n n CHB C4A HEM sing 121 n n CHB C1B HEM doub 122 n n CHB HHB HEM sing 123 n n CHC C4B HEM sing 124 n n CHC C1C HEM doub 125 n n CHC HHC HEM sing 126 n n CHD C4C HEM doub 127 n n CHD C1D HEM sing 128 n n CHD HHD HEM sing 129 n n C1A C2A HEM doub 130 n y C1A NA HEM sing 131 n y C2A C3A HEM sing 132 n y C2A CAA HEM sing 133 n n C3A C4A HEM doub 134 n y C3A CMA HEM sing 135 n n C4A NA HEM sing 136 n y CMA HMA HEM sing 137 n n CMA HMAA HEM sing 138 n n CMA HMAB HEM sing 139 n n CAA CBA HEM sing 140 n n CAA HAA HEM sing 141 n n CAA HAAA HEM sing 142 n n CBA CGA HEM sing 143 n n CBA HBA HEM sing 144 n n CBA HBAA HEM sing 145 n n CGA O1A HEM doub 146 n n CGA O2A HEM sing 147 n n C1B C2B HEM sing 148 n n C1B NB HEM sing 149 n n C2B C3B HEM doub 150 n n C2B CMB HEM sing 151 n n C3B C4B HEM sing 152 n n C3B CAB HEM sing 153 n n C4B NB HEM doub 154 n n CMB HMB HEM sing 155 n n CMB HMBA HEM sing 156 n n CMB HMBB HEM sing 157 n n CAB CBB HEM doub 158 n n CAB HAB HEM sing 159 n n CBB HBB HEM sing 160 n n CBB HBBA HEM sing 161 n n C1C C2C HEM sing 162 n y C1C NC HEM sing 163 n y C2C C3C HEM doub 164 n y C2C CMC HEM sing 165 n n C3C C4C HEM sing 166 n y C3C CAC HEM sing 167 n n C4C NC HEM sing 168 n y CMC HMC HEM sing 169 n n CMC HMCA HEM sing 170 n n CMC HMCB HEM sing 171 n n CAC CBC HEM doub 172 n n CAC HAC HEM sing 173 n n CBC HBC HEM sing 174 n n CBC HBCA HEM sing 175 n n C1D C2D HEM sing 176 n n C1D ND HEM doub 177 n n C2D C3D HEM doub 178 n n C2D CMD HEM sing 179 n n C3D C4D HEM sing 180 n n C3D CAD HEM sing 181 n n C4D ND HEM sing 182 n n CMD HMD HEM sing 183 n n CMD HMDA HEM sing 184 n n CMD HMDB HEM sing 185 n n CAD CBD HEM sing 186 n n CAD HAD HEM sing 187 n n CAD HADA HEM sing 188 n n CBD CGD HEM sing 189 n n CBD HBD HEM sing 190 n n CBD HBDA HEM sing 191 n n CGD O1D HEM doub 192 n n CGD O2D HEM sing 193 n n O2A H2A HEM sing 194 n n O2D H2D HEM sing 195 n n FE NA HEM sing 196 n n FE NB HEM sing 197 n n FE NC HEM sing 198 n n FE ND HEM sing 199 n n # _atom_sites.entry_id 1BJE _atom_sites.fract_transf_matrix[1][1] 0.01562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004761 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 155 155 SO4 SO4 . C 3 AZI A 1 156 156 AZI AZI . D 4 HEM A 1 154 154 HEM HEM . E 5 HOH A 1 157 157 HOH HOH . E 5 HOH A 2 158 158 HOH HOH . E 5 HOH A 3 159 159 HOH HOH . E 5 HOH A 4 160 160 HOH HOH . E 5 HOH A 5 161 161 HOH HOH . E 5 HOH A 6 162 162 HOH HOH . E 5 HOH A 7 163 163 HOH HOH . E 5 HOH A 8 164 164 HOH HOH . E 5 HOH A 9 165 165 HOH HOH . E 5 HOH A 10 166 166 HOH HOH . E 5 HOH A 11 167 167 HOH HOH . E 5 HOH A 12 168 168 HOH HOH . E 5 HOH A 13 169 169 HOH HOH . E 5 HOH A 14 170 170 HOH HOH . E 5 HOH A 15 171 171 HOH HOH . E 5 HOH A 16 172 172 HOH HOH . E 5 HOH A 17 173 173 HOH HOH . E 5 HOH A 18 174 174 HOH HOH . E 5 HOH A 19 175 175 HOH HOH . E 5 HOH A 20 176 176 HOH HOH . E 5 HOH A 21 177 177 HOH HOH . E 5 HOH A 22 178 178 HOH HOH . E 5 HOH A 23 179 179 HOH HOH . E 5 HOH A 24 180 180 HOH HOH . E 5 HOH A 25 181 181 HOH HOH . E 5 HOH A 26 182 182 HOH HOH . E 5 HOH A 27 183 183 HOH HOH . E 5 HOH A 28 184 184 HOH HOH . E 5 HOH A 29 185 185 HOH HOH . E 5 HOH A 30 186 186 HOH HOH . E 5 HOH A 31 187 187 HOH HOH . E 5 HOH A 32 188 188 HOH HOH . E 5 HOH A 33 189 189 HOH HOH . E 5 HOH A 34 190 190 HOH HOH . E 5 HOH A 35 191 191 HOH HOH . E 5 HOH A 36 192 192 HOH HOH . E 5 HOH A 37 193 193 HOH HOH . E 5 HOH A 38 194 194 HOH HOH . E 5 HOH A 39 195 195 HOH HOH . E 5 HOH A 40 196 196 HOH HOH . E 5 HOH A 41 197 197 HOH HOH . E 5 HOH A 42 198 198 HOH HOH . E 5 HOH A 43 199 199 HOH HOH . E 5 HOH A 44 200 200 HOH HOH . E 5 HOH A 45 201 201 HOH HOH . E 5 HOH A 46 202 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 15.392 32.789 5.076 1 13.28 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . D 4 13.734 29.636 8.337 1 11.76 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . D 4 13.115 26.418 4.81 1 9.66 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . D 4 15.281 29.356 1.652 1 10.3 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . D 4 14.986 32.252 6.267 1 11.08 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . D 4 14.89 32.932 7.537 1 11.19 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . D 4 14.431 32.062 8.449 1 11.07 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . D 4 14.192 30.802 7.744 1 12.41 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . D 4 14.149 32.236 9.938 1 9.98 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . D 4 15.269 34.433 7.741 1 10.73 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . D 4 14.07 35.413 7.984 1 10.05 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . D 4 13.1 35.453 6.802 1 10.76 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . D 4 13.584 35.739 5.681 1 6.76 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . D 4 11.891 35.084 7.092 1 11.75 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . D 4 13.378 28.469 7.678 1 9.82 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . D 4 12.772 27.327 8.257 1 7.84 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . D 4 12.613 26.415 7.294 1 9.26 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . D 4 13.104 27.006 6.059 1 10.7 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . D 4 12.399 27.162 9.761 1 5.56 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . D 4 12.007 25.022 7.318 1 11.7 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . D 4 12.02 24.056 8.462 1 13.43 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . D 4 13.7 26.899 3.668 1 8.82 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . D 4 13.958 26.145 2.447 1 10.52 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . D 4 14.555 26.974 1.568 1 9.6 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . D 4 14.747 28.25 2.246 1 8.86 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . D 4 13.497 24.682 2.226 1 10.04 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . D 4 15.013 26.724 0.131 1 10.34 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . D 4 15.122 25.289 -0.361 1 13.52 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . D 4 15.484 30.552 2.31 1 11.68 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . D 4 16.077 31.719 1.74 1 11.32 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . D 4 16.085 32.636 2.687 1 12.81 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . D 4 15.53 32.093 3.885 1 12.54 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . D 4 16.622 31.852 0.284 1 12.33 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . D 4 16.743 34.06 2.687 1 15.68 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . D 4 18.284 33.764 2.91 1 18.12 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . D 4 19.093 34.991 3.113 1 20.83 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . D 4 19.756 35.389 2.123 1 24.02 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . D 4 19.083 35.528 4.233 1 25.02 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . D 4 14.551 30.941 6.401 1 11.98 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . D 4 13.583 28.293 6.301 1 10.17 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . D 4 14.21 28.182 3.514 1 9.75 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . D 4 15.14 30.796 3.635 1 11.94 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . D 4 14.308 29.566 4.953 1 13.9 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #