data_1BJG
#
_model_server_result.job_id            054JQ_UTHi1GhFIVNfDGQw 
_model_server_result.datetime_utc      '2025-03-05 02:22:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bjg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":266}' 
#
_entry.id    1BJG 
#
_exptl.entry_id    1BJG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              326.172 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BJG 
_cell.length_a            133 
_cell.length_b            133 
_cell.length_c            133 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BJG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 15_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 66.5 0 133 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C CXM 1 A CXM 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A SG CYS 146 A CYS 146 1_555 B C6 UFP . A UFP 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? 
covale ? covale3 B F5 UFP . A UFP 266 1_555 C N1 TMF . A TMF 267 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.164 ? 
covale ? covale4 B F5 UFP . A UFP 266 1_555 C C2 TMF . A TMF 267 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.387 ? 
covale ? covale5 B F5 UFP . A UFP 266 1_555 C NA2 TMF . A TMF 267 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.903 ? 
covale ? covale6 B F5 UFP . A UFP 266 1_555 C N3 TMF . A TMF 267 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.786 ? 
#
_chem_comp.formula           'C9 H12 F N2 O8 P' 
_chem_comp.formula_weight    326.172 
_chem_comp.id                UFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UFP sing 437 n n 
N1 C6 UFP sing 438 n n 
N1 C1' UFP sing 439 n n 
C2 N3 UFP sing 440 n n 
C2 O2 UFP doub 441 n n 
N3 C4 UFP sing 442 n n 
N3 HN3 UFP sing 443 n n 
C4 C5 UFP sing 444 n n 
C4 O4 UFP doub 445 n n 
C5 C6 UFP doub 446 n n 
C5 F5 UFP sing 447 n n 
C6 H6 UFP sing 448 n n 
C1' C2' UFP sing 449 n n 
C1' O4' UFP sing 450 n n 
C1' H1' UFP sing 451 n n 
C2' C3' UFP sing 452 n n 
C2' "H2'1" UFP sing 453 n n 
C2' "H2'2" UFP sing 454 n n 
C3' C4' UFP sing 455 n n 
C3' O3' UFP sing 456 n n 
C3' H3' UFP sing 457 n n 
C4' O4' UFP sing 458 n n 
C4' C5' UFP sing 459 n n 
C4' H4' UFP sing 460 n n 
O3' HO3' UFP sing 461 n n 
C5' O5' UFP sing 462 n n 
C5' "H5'1" UFP sing 463 n n 
C5' "H5'2" UFP sing 464 n n 
O5' P UFP sing 465 n n 
P O1P UFP doub 466 n n 
P O2P UFP sing 467 n n 
P O3P UFP sing 468 n n 
O2P HOP2 UFP sing 469 n n 
O3P HOP3 UFP sing 470 n n 
#
_atom_sites.entry_id                     1BJG 
_atom_sites.fract_transf_matrix[1][1]    0.007519 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UFP A 1 266 266 UFP UFP . 
C 3 TMF A 1 267 267 TMF TMF . 
D 4 HOH A 1 268 268 HOH HOH . 
D 4 HOH A 2 269 269 HOH HOH . 
D 4 HOH A 3 270 270 HOH HOH . 
D 4 HOH A 4 271 271 HOH HOH . 
D 4 HOH A 5 272 272 HOH HOH . 
D 4 HOH A 6 273 273 HOH HOH . 
D 4 HOH A 7 274 274 HOH HOH . 
D 4 HOH A 8 275 275 HOH HOH . 
D 4 HOH A 9 276 276 HOH HOH . 
D 4 HOH A 10 277 277 HOH HOH . 
D 4 HOH A 11 278 278 HOH HOH . 
D 4 HOH A 12 279 279 HOH HOH . 
D 4 HOH A 13 280 280 HOH HOH . 
D 4 HOH A 14 281 281 HOH HOH . 
D 4 HOH A 15 282 282 HOH HOH . 
D 4 HOH A 16 283 283 HOH HOH . 
D 4 HOH A 17 284 284 HOH HOH . 
D 4 HOH A 18 285 285 HOH HOH . 
D 4 HOH A 19 286 286 HOH HOH . 
D 4 HOH A 20 287 287 HOH HOH . 
D 4 HOH A 21 288 288 HOH HOH . 
D 4 HOH A 22 289 289 HOH HOH . 
D 4 HOH A 23 290 290 HOH HOH . 
D 4 HOH A 24 291 291 HOH HOH . 
D 4 HOH A 25 292 292 HOH HOH . 
D 4 HOH A 26 293 293 HOH HOH . 
D 4 HOH A 27 294 294 HOH HOH . 
D 4 HOH A 28 295 295 HOH HOH . 
D 4 HOH A 29 296 296 HOH HOH . 
D 4 HOH A 30 297 297 HOH HOH . 
D 4 HOH A 31 298 298 HOH HOH . 
D 4 HOH A 32 299 299 HOH HOH . 
D 4 HOH A 33 300 300 HOH HOH . 
D 4 HOH A 34 301 301 HOH HOH . 
D 4 HOH A 35 302 302 HOH HOH . 
D 4 HOH A 36 303 303 HOH HOH . 
D 4 HOH A 37 304 304 HOH HOH . 
D 4 HOH A 38 305 305 HOH HOH . 
D 4 HOH A 39 306 306 HOH HOH . 
D 4 HOH A 40 307 307 HOH HOH . 
D 4 HOH A 41 308 308 HOH HOH . 
D 4 HOH A 42 309 309 HOH HOH . 
D 4 HOH A 43 310 310 HOH HOH . 
D 4 HOH A 44 311 311 HOH HOH . 
D 4 HOH A 45 312 312 HOH HOH . 
D 4 HOH A 46 313 313 HOH HOH . 
D 4 HOH A 47 314 314 HOH HOH . 
D 4 HOH A 48 315 315 HOH HOH . 
D 4 HOH A 49 316 316 HOH HOH . 
D 4 HOH A 50 317 317 HOH HOH . 
D 4 HOH A 51 318 318 HOH HOH . 
D 4 HOH A 52 319 319 HOH HOH . 
D 4 HOH A 53 320 320 HOH HOH . 
D 4 HOH A 54 321 321 HOH HOH . 
D 4 HOH A 55 322 322 HOH HOH . 
D 4 HOH A 56 323 323 HOH HOH . 
D 4 HOH A 57 324 324 HOH HOH . 
D 4 HOH A 58 325 325 HOH HOH . 
D 4 HOH A 59 326 326 HOH HOH . 
D 4 HOH A 60 327 327 HOH HOH . 
D 4 HOH A 61 328 328 HOH HOH . 
D 4 HOH A 62 329 329 HOH HOH . 
D 4 HOH A 63 330 330 HOH HOH . 
D 4 HOH A 64 331 331 HOH HOH . 
D 4 HOH A 65 332 332 HOH HOH . 
D 4 HOH A 66 333 333 HOH HOH . 
D 4 HOH A 67 334 334 HOH HOH . 
D 4 HOH A 68 335 335 HOH HOH . 
D 4 HOH A 69 336 336 HOH HOH . 
D 4 HOH A 70 337 337 HOH HOH . 
D 4 HOH A 71 338 338 HOH HOH . 
D 4 HOH A 72 339 339 HOH HOH . 
D 4 HOH A 73 341 341 HOH HOH . 
D 4 HOH A 74 342 342 HOH HOH . 
D 4 HOH A 75 343 343 HOH HOH . 
D 4 HOH A 76 344 344 HOH HOH . 
D 4 HOH A 77 345 345 HOH HOH . 
D 4 HOH A 78 346 346 HOH HOH . 
D 4 HOH A 79 347 347 HOH HOH . 
D 4 HOH A 80 348 348 HOH HOH . 
D 4 HOH A 81 349 349 HOH HOH . 
D 4 HOH A 82 350 350 HOH HOH . 
D 4 HOH A 83 351 351 HOH HOH . 
D 4 HOH A 84 352 352 HOH HOH . 
D 4 HOH A 85 353 353 HOH HOH . 
D 4 HOH A 86 354 354 HOH HOH . 
D 4 HOH A 87 355 355 HOH HOH . 
D 4 HOH A 88 356 356 HOH HOH . 
D 4 HOH A 89 357 357 HOH HOH . 
D 4 HOH A 90 359 359 HOH HOH . 
D 4 HOH A 91 360 360 HOH HOH . 
D 4 HOH A 92 361 361 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UFP . . . B 2 42.238 70.632 54.263 0.58 55.42 ? N1 UFP 266 A 1 
HETATM 2 C C2 UFP . . . B 2 41.357 71.708 54.07 0.58 56.95 ? C2 UFP 266 A 1 
HETATM 3 N N3 UFP . . . B 2 40.116 71.383 53.572 0.58 57.31 ? N3 UFP 266 A 1 
HETATM 4 C C4 UFP . . . B 2 39.728 70.107 53.226 0.58 57.92 ? C4 UFP 266 A 1 
HETATM 5 C C5 UFP . . . B 2 40.699 68.925 53.341 0.58 57.94 ? C5 UFP 266 A 1 
HETATM 6 C C6 UFP . . . B 2 41.81 69.208 54.414 0.58 53.65 ? C6 UFP 266 A 1 
HETATM 7 O O2 UFP . . . B 2 41.648 72.887 54.279 0.58 56.02 ? O2 UFP 266 A 1 
HETATM 8 O O4 UFP . . . B 2 38.575 69.938 52.82 0.58 58.78 ? O4 UFP 266 A 1 
HETATM 9 F F5 UFP . . . B 2 40.033 67.706 53.622 0.58 62.26 ? F5 UFP 266 A 1 
HETATM 10 C C1' UFP . . . B 2 43.685 70.877 54.251 0.58 56.1 ? C1' UFP 266 A 1 
HETATM 11 C C2' UFP . . . B 2 44.192 71.25 55.563 0.58 56.05 ? C2' UFP 266 A 1 
HETATM 12 C C3' UFP . . . B 2 45.613 71.243 55.394 0.58 56.75 ? C3' UFP 266 A 1 
HETATM 13 C C4' UFP . . . B 2 45.944 69.935 54.649 0.58 55.59 ? C4' UFP 266 A 1 
HETATM 14 O O3' UFP . . . B 2 45.973 72.424 54.598 0.58 52.99 ? O3' UFP 266 A 1 
HETATM 15 O O4' UFP . . . B 2 44.701 69.854 53.786 0.58 57.31 ? O4' UFP 266 A 1 
HETATM 16 C C5' UFP . . . B 2 45.91 68.768 55.575 0.58 49.83 ? C5' UFP 266 A 1 
HETATM 17 O O5' UFP . . . B 2 46.982 68.719 56.589 0.58 39.74 ? O5' UFP 266 A 1 
HETATM 18 P P UFP . . . B 2 46.622 67.975 57.933 0.58 32.59 ? P UFP 266 A 1 
HETATM 19 O O1P UFP . . . B 2 45.659 68.87 58.57 0.58 33.7 ? O1P UFP 266 A 1 
HETATM 20 O O2P UFP . . . B 2 45.985 66.697 57.613 0.58 29.85 ? O2P UFP 266 A 1 
HETATM 21 O O3P UFP . . . B 2 47.773 67.78 58.856 0.58 29.93 ? O3P UFP 266 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#