data_1BJG # _model_server_result.job_id UVFWYB5MWsaUccHc0icdeg _model_server_result.datetime_utc '2025-03-05 02:57:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bjg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":267}' # _entry.id 1BJG # _exptl.entry_id 1BJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,10-METHYLENE-6-HYDROFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BJG _cell.length_a 133 _cell.length_b 133 _cell.length_c 133 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 66.5 0 133 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C CXM 1 A CXM 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A SG CYS 146 A CYS 146 1_555 B C6 UFP . A UFP 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? covale ? covale3 B F5 UFP . A UFP 266 1_555 C N1 TMF . A TMF 267 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.164 ? covale ? covale4 B F5 UFP . A UFP 266 1_555 C C2 TMF . A TMF 267 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.387 ? covale ? covale5 B F5 UFP . A UFP 266 1_555 C NA2 TMF . A TMF 267 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.903 ? covale ? covale6 B F5 UFP . A UFP 266 1_555 C N3 TMF . A TMF 267 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.786 ? # _chem_comp.formula 'C20 H21 N7 O6' _chem_comp.formula_weight 455.424 _chem_comp.id TMF _chem_comp.mon_nstd_flag . _chem_comp.name '5,10-METHYLENE-6-HYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 TMF sing 328 n y N1 C8A TMF sing 329 n y N1 HN1 TMF sing 330 n n C2 NA2 TMF sing 331 n n C2 N3 TMF doub 332 n y NA2 HN21 TMF sing 333 n n NA2 HN22 TMF sing 334 n n N3 C4 TMF sing 335 n y C4 O4 TMF doub 336 n n C4 C4A TMF sing 337 n y C4A N5 TMF sing 338 n n C4A C8A TMF doub 339 n y N5 C6 TMF sing 340 n n N5 CP1 TMF sing 341 n n C6 C7 TMF sing 342 n n C6 C9 TMF sing 343 n n C6 H6 TMF sing 344 n n C7 N8 TMF doub 345 n n C7 H7 TMF sing 346 n n N8 C8A TMF sing 347 n n C9 N10 TMF sing 348 n n C9 H91 TMF sing 349 n n C9 H92 TMF sing 350 n n N10 C14 TMF sing 351 n n N10 CP1 TMF sing 352 n n C11 C12 TMF doub 353 n y C11 C16 TMF sing 354 n y C11 C TMF sing 355 n n C12 C13 TMF sing 356 n y C12 H12 TMF sing 357 n n C13 C14 TMF doub 358 n y C13 H13 TMF sing 359 n n C14 C15 TMF sing 360 n y C15 C16 TMF doub 361 n y C15 H15 TMF sing 362 n n C16 H16 TMF sing 363 n n C O TMF doub 364 n n C N TMF sing 365 n n N CA TMF sing 366 n n N HN TMF sing 367 n n CA CB TMF sing 368 n n CA CT TMF sing 369 n n CA HA TMF sing 370 n n CB CG TMF sing 371 n n CB HB1 TMF sing 372 n n CB HB2 TMF sing 373 n n CG CD TMF sing 374 n n CG HG1 TMF sing 375 n n CG HG2 TMF sing 376 n n CD OE1 TMF doub 377 n n CD OE2 TMF sing 378 n n OE2 HOE2 TMF sing 379 n n CT O1 TMF doub 380 n n CT O2 TMF sing 381 n n O2 HO2 TMF sing 382 n n CP1 HCP1 TMF sing 383 n n CP1 HCP2 TMF sing 384 n n # _atom_sites.entry_id 1BJG _atom_sites.fract_transf_matrix[1][1] 0.007519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UFP A 1 266 266 UFP UFP . C 3 TMF A 1 267 267 TMF TMF . D 4 HOH A 1 268 268 HOH HOH . D 4 HOH A 2 269 269 HOH HOH . D 4 HOH A 3 270 270 HOH HOH . D 4 HOH A 4 271 271 HOH HOH . D 4 HOH A 5 272 272 HOH HOH . D 4 HOH A 6 273 273 HOH HOH . D 4 HOH A 7 274 274 HOH HOH . D 4 HOH A 8 275 275 HOH HOH . D 4 HOH A 9 276 276 HOH HOH . D 4 HOH A 10 277 277 HOH HOH . D 4 HOH A 11 278 278 HOH HOH . D 4 HOH A 12 279 279 HOH HOH . D 4 HOH A 13 280 280 HOH HOH . D 4 HOH A 14 281 281 HOH HOH . D 4 HOH A 15 282 282 HOH HOH . D 4 HOH A 16 283 283 HOH HOH . D 4 HOH A 17 284 284 HOH HOH . D 4 HOH A 18 285 285 HOH HOH . D 4 HOH A 19 286 286 HOH HOH . D 4 HOH A 20 287 287 HOH HOH . D 4 HOH A 21 288 288 HOH HOH . D 4 HOH A 22 289 289 HOH HOH . D 4 HOH A 23 290 290 HOH HOH . D 4 HOH A 24 291 291 HOH HOH . D 4 HOH A 25 292 292 HOH HOH . D 4 HOH A 26 293 293 HOH HOH . D 4 HOH A 27 294 294 HOH HOH . D 4 HOH A 28 295 295 HOH HOH . D 4 HOH A 29 296 296 HOH HOH . D 4 HOH A 30 297 297 HOH HOH . D 4 HOH A 31 298 298 HOH HOH . D 4 HOH A 32 299 299 HOH HOH . D 4 HOH A 33 300 300 HOH HOH . D 4 HOH A 34 301 301 HOH HOH . D 4 HOH A 35 302 302 HOH HOH . D 4 HOH A 36 303 303 HOH HOH . D 4 HOH A 37 304 304 HOH HOH . D 4 HOH A 38 305 305 HOH HOH . D 4 HOH A 39 306 306 HOH HOH . D 4 HOH A 40 307 307 HOH HOH . D 4 HOH A 41 308 308 HOH HOH . D 4 HOH A 42 309 309 HOH HOH . D 4 HOH A 43 310 310 HOH HOH . D 4 HOH A 44 311 311 HOH HOH . D 4 HOH A 45 312 312 HOH HOH . D 4 HOH A 46 313 313 HOH HOH . D 4 HOH A 47 314 314 HOH HOH . D 4 HOH A 48 315 315 HOH HOH . D 4 HOH A 49 316 316 HOH HOH . D 4 HOH A 50 317 317 HOH HOH . D 4 HOH A 51 318 318 HOH HOH . D 4 HOH A 52 319 319 HOH HOH . D 4 HOH A 53 320 320 HOH HOH . D 4 HOH A 54 321 321 HOH HOH . D 4 HOH A 55 322 322 HOH HOH . D 4 HOH A 56 323 323 HOH HOH . D 4 HOH A 57 324 324 HOH HOH . D 4 HOH A 58 325 325 HOH HOH . D 4 HOH A 59 326 326 HOH HOH . D 4 HOH A 60 327 327 HOH HOH . D 4 HOH A 61 328 328 HOH HOH . D 4 HOH A 62 329 329 HOH HOH . D 4 HOH A 63 330 330 HOH HOH . D 4 HOH A 64 331 331 HOH HOH . D 4 HOH A 65 332 332 HOH HOH . D 4 HOH A 66 333 333 HOH HOH . D 4 HOH A 67 334 334 HOH HOH . D 4 HOH A 68 335 335 HOH HOH . D 4 HOH A 69 336 336 HOH HOH . D 4 HOH A 70 337 337 HOH HOH . D 4 HOH A 71 338 338 HOH HOH . D 4 HOH A 72 339 339 HOH HOH . D 4 HOH A 73 341 341 HOH HOH . D 4 HOH A 74 342 342 HOH HOH . D 4 HOH A 75 343 343 HOH HOH . D 4 HOH A 76 344 344 HOH HOH . D 4 HOH A 77 345 345 HOH HOH . D 4 HOH A 78 346 346 HOH HOH . D 4 HOH A 79 347 347 HOH HOH . D 4 HOH A 80 348 348 HOH HOH . D 4 HOH A 81 349 349 HOH HOH . D 4 HOH A 82 350 350 HOH HOH . D 4 HOH A 83 351 351 HOH HOH . D 4 HOH A 84 352 352 HOH HOH . D 4 HOH A 85 353 353 HOH HOH . D 4 HOH A 86 354 354 HOH HOH . D 4 HOH A 87 355 355 HOH HOH . D 4 HOH A 88 356 356 HOH HOH . D 4 HOH A 89 357 357 HOH HOH . D 4 HOH A 90 359 359 HOH HOH . D 4 HOH A 91 360 360 HOH HOH . D 4 HOH A 92 361 361 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TMF . A . C 3 46.492 71.936 51.464 0.35 42.17 ? N1 TMF 267 A 1 HETATM 2 N N1 TMF . B . C 3 41.085 66.461 52.199 0.43 50.51 ? N1 TMF 267 A 1 HETATM 3 C C2 TMF . A . C 3 47.587 71.596 50.788 0.35 43.34 ? C2 TMF 267 A 1 HETATM 4 C C2 TMF . B . C 3 40.078 66.441 53.054 0.43 50.4 ? C2 TMF 267 A 1 HETATM 5 N NA2 TMF . A . C 3 48.774 71.596 51.401 0.35 39.79 ? NA2 TMF 267 A 1 HETATM 6 N NA2 TMF . B . C 3 40.299 65.939 54.277 0.43 53.07 ? NA2 TMF 267 A 1 HETATM 7 N N3 TMF . A . C 3 47.498 71.229 49.506 0.35 43.19 ? N3 TMF 267 A 1 HETATM 8 N N3 TMF . B . C 3 38.843 66.793 52.653 0.43 47.53 ? N3 TMF 267 A 1 HETATM 9 C C4 TMF . A . C 3 46.353 71.17 48.806 0.35 43.96 ? C4 TMF 267 A 1 HETATM 10 C C4 TMF . B . C 3 38.521 67.179 51.407 0.43 47.23 ? C4 TMF 267 A 1 HETATM 11 O O4 TMF . A . C 3 46.329 70.783 47.488 0.35 45.73 ? O4 TMF 267 A 1 HETATM 12 O O4 TMF . B . C 3 37.236 67.539 51.067 0.43 41.11 ? O4 TMF 267 A 1 HETATM 13 C C4A TMF . A . C 3 45.177 71.532 49.508 0.35 44.44 ? C4A TMF 267 A 1 HETATM 14 C C4A TMF . B . C 3 39.596 67.197 50.467 0.43 49.38 ? C4A TMF 267 A 1 HETATM 15 N N5 TMF . A . C 3 43.963 71.685 48.895 0.35 45.62 ? N5 TMF 267 A 1 HETATM 16 N N5 TMF . B . C 3 39.414 67.385 49.11 0.43 50.38 ? N5 TMF 267 A 1 HETATM 17 C C6 TMF . A . C 3 42.815 72.223 49.68 0.35 45.3 ? C6 TMF 267 A 1 HETATM 18 C C6 TMF . B . C 3 40.559 67.022 48.189 0.43 49.21 ? C6 TMF 267 A 1 HETATM 19 C C7 TMF . A . C 3 42.967 72.078 51.127 0.35 42.84 ? C7 TMF 267 A 1 HETATM 20 C C7 TMF . B . C 3 41.886 67.234 48.854 0.43 48.68 ? C7 TMF 267 A 1 HETATM 21 N N8 TMF . A . C 3 44.358 72.245 51.541 0.35 43.95 ? N8 TMF 267 A 1 HETATM 22 N N8 TMF . B . C 3 41.865 66.777 50.24 0.43 49.03 ? N8 TMF 267 A 1 HETATM 23 C C8A TMF . A . C 3 45.322 71.909 50.853 0.35 43.72 ? C8A TMF 267 A 1 HETATM 24 C C8A TMF . B . C 3 40.867 66.818 50.956 0.43 49.44 ? C8A TMF 267 A 1 HETATM 25 C C9 TMF . A . C 3 41.599 71.512 49.264 0.35 48.11 ? C9 TMF 267 A 1 HETATM 26 C C9 TMF . B . C 3 40.344 67.928 47.073 0.43 50.39 ? C9 TMF 267 A 1 HETATM 27 N N10 TMF . A . C 3 41.893 70.925 47.949 0.35 50.33 ? N10 TMF 267 A 1 HETATM 28 N N10 TMF . B . C 3 40.171 69.179 47.811 0.43 52.92 ? N10 TMF 267 A 1 HETATM 29 C C11 TMF . A . C 3 40.491 72.567 44.369 0.35 60.02 ? C11 TMF 267 A 1 HETATM 30 C C11 TMF . B . C 3 41.005 72.671 45.764 0.43 59 ? C11 TMF 267 A 1 HETATM 31 C C12 TMF . A . C 3 41.743 71.926 44.392 0.35 58.39 ? C12 TMF 267 A 1 HETATM 32 C C12 TMF . B . C 3 39.721 72.091 45.638 0.43 57.51 ? C12 TMF 267 A 1 HETATM 33 C C13 TMF . A . C 3 42.239 71.421 45.606 0.35 56.03 ? C13 TMF 267 A 1 HETATM 34 C C13 TMF . B . C 3 39.366 70.933 46.363 0.43 55.58 ? C13 TMF 267 A 1 HETATM 35 C C14 TMF . A . C 3 41.5 71.547 46.809 0.35 53.55 ? C14 TMF 267 A 1 HETATM 36 C C14 TMF . B . C 3 40.317 70.357 47.218 0.43 54.88 ? C14 TMF 267 A 1 HETATM 37 C C15 TMF . A . C 3 40.284 72.262 46.786 0.35 55.2 ? C15 TMF 267 A 1 HETATM 38 C C15 TMF . B . C 3 41.557 70.984 47.435 0.43 56.8 ? C15 TMF 267 A 1 HETATM 39 C C16 TMF . A . C 3 39.791 72.765 45.577 0.35 57.96 ? C16 TMF 267 A 1 HETATM 40 C C16 TMF . B . C 3 41.892 72.129 46.709 0.43 57.93 ? C16 TMF 267 A 1 HETATM 41 C C TMF . A . C 3 39.809 72.874 43.124 0.35 62.4 ? C TMF 267 A 1 HETATM 42 C C TMF . B . C 3 41.535 73.637 44.818 0.43 59.31 ? C TMF 267 A 1 HETATM 43 O O TMF . A . C 3 38.579 72.951 43.103 0.35 64.01 ? O TMF 267 A 1 HETATM 44 O O TMF . B . C 3 42.754 73.689 44.592 0.43 57.37 ? O TMF 267 A 1 HETATM 45 N N TMF . A . C 3 40.503 73.065 41.988 0.35 64.23 ? N TMF 267 A 1 HETATM 46 N N TMF . B . C 3 40.668 74.441 44.169 0.43 59.79 ? N TMF 267 A 1 HETATM 47 C CA TMF . A . C 3 39.861 73.64 40.774 0.35 65.34 ? CA TMF 267 A 1 HETATM 48 C CA TMF . B . C 3 40.635 75.922 44.196 0.43 60.68 ? CA TMF 267 A 1 HETATM 49 C CB TMF . A . C 3 38.993 72.638 40.066 0.35 62.6 ? CB TMF 267 A 1 HETATM 50 C CB TMF . B . C 3 39.262 76.312 43.73 0.43 57.08 ? CB TMF 267 A 1 HETATM 51 C CG TMF . A . C 3 37.922 73.263 39.176 0.35 60.53 ? CG TMF 267 A 1 HETATM 52 C CG TMF . B . C 3 38.115 75.693 44.526 0.43 50.12 ? CG TMF 267 A 1 HETATM 53 C CD TMF . A . C 3 36.933 72.253 38.608 0.35 59.33 ? CD TMF 267 A 1 HETATM 54 C CD TMF . B . C 3 36.76 75.993 43.937 0.43 45.36 ? CD TMF 267 A 1 HETATM 55 O OE1 TMF . A . C 3 35.807 72.144 39.147 0.35 57.89 ? OE1 TMF 267 A 1 HETATM 56 O OE1 TMF . B . C 3 35.984 76.696 44.591 0.43 42.48 ? OE1 TMF 267 A 1 HETATM 57 O OE2 TMF . A . C 3 37.262 71.589 37.605 0.35 57.68 ? OE2 TMF 267 A 1 HETATM 58 O OE2 TMF . B . C 3 36.48 75.532 42.809 0.43 41.23 ? OE2 TMF 267 A 1 HETATM 59 C CT TMF . A . C 3 40.925 74.222 39.835 0.35 67.86 ? CT TMF 267 A 1 HETATM 60 C CT TMF . B . C 3 41.719 76.589 43.331 0.43 61.54 ? CT TMF 267 A 1 HETATM 61 O O1 TMF . A . C 3 42.128 73.985 40.086 0.35 70.14 ? O1 TMF 267 A 1 HETATM 62 O O1 TMF . B . C 3 42 76.082 42.224 0.43 64.07 ? O1 TMF 267 A 1 HETATM 63 O O2 TMF . A . C 3 40.552 74.941 38.881 0.35 68.88 ? O2 TMF 267 A 1 HETATM 64 O O2 TMF . B . C 3 42.309 77.593 43.791 0.43 63.18 ? O2 TMF 267 A 1 HETATM 65 C CP1 TMF . A . C 3 43.324 70.585 48.154 0.35 48.07 ? CP1 TMF 267 A 1 HETATM 66 C CP1 TMF . B . C 3 39.027 68.752 48.638 0.43 50.8 ? CP1 TMF 267 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 66 #