data_1BJI # _model_server_result.job_id U8QheJzXoZEjElBWL-zU-Q _model_server_result.datetime_utc '2024-11-19 19:21:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":478}' # _entry.id 1BJI # _exptl.entry_id 1BJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BJI _cell.length_a 182.8 _cell.length_b 182.8 _cell.length_c 182.8 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 3 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 200 NAG 2 n B NAG 2 B 2 NAG ? 200 NAG 2 n B BMA 3 B 3 BMA ? 200 MAN 2 n B MAN 4 B 4 MAN ? 200 MAN 2 n B MAN 5 B 5 MAN ? 200 MAN 2 n B MAN 6 B 6 MAN ? 200 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 92 1_555 A SG CYS 337 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 43 A CYS 124 1_555 A SG CYS 48 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 95 A CYS 175 1_555 A SG CYS 113 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 A SG CYS 103 A CYS 183 1_555 A SG CYS 150 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 152 A CYS 232 1_555 A SG CYS 157 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf6 A SG CYS 198 A CYS 278 1_555 A SG CYS 211 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 A SG CYS 200 A CYS 280 1_555 A SG CYS 209 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 238 A CYS 318 1_555 A SG CYS 256 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 A SG CYS 341 A CYS 421 1_555 A SG CYS 367 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 5 A ASN 86 1_555 D C1 NAG . A NAG 476 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 A ND2 ASN 65 A ASN 146 1_555 E C1 NAG . A NAG 477 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.487 ? covale ? covale3 A ND2 ASN 120 A ASN 200 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale7 B O2 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale8 B O2 MAN . B MAN 5 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? metalc ? metalc1 A O ASP 213 A ASP 293 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc2 A O GLY 217 A GLY 297 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc3 A OD2 ASP 244 A ASP 324 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc4 A O ASN 266 A ASN 347 1_555 F CA CA . A CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc5 F CA CA . A CA 478 1_555 H O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc6 F CA CA . A CA 478 1_555 H O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BJI _atom_sites.fract_transf_matrix[1][1] 0.00547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MAN A 1 475 200 MAN MAN G D 4 NAG A 1 476 86 NAG NAG A E 4 NAG A 1 477 146 NAG NAG A F 5 CA A 1 478 150 CA CA . G 6 DPC A 1 479 217 DPC G21 G H 7 HOH A 1 480 1 HOH HOH . H 7 HOH A 2 481 2 HOH HOH . H 7 HOH A 3 482 3 HOH HOH . H 7 HOH A 4 483 4 HOH HOH . H 7 HOH A 5 484 5 HOH HOH . H 7 HOH A 6 485 6 HOH HOH . H 7 HOH A 7 486 7 HOH HOH . H 7 HOH A 8 487 9 HOH HOH . H 7 HOH A 9 488 11 HOH HOH . H 7 HOH A 10 489 12 HOH HOH . H 7 HOH A 11 490 13 HOH HOH . H 7 HOH A 12 491 14 HOH HOH . H 7 HOH A 13 492 15 HOH HOH . H 7 HOH A 14 493 17 HOH HOH . H 7 HOH A 15 494 18 HOH HOH . H 7 HOH A 16 495 19 HOH HOH . H 7 HOH A 17 496 21 HOH HOH . H 7 HOH A 18 497 24 HOH HOH . H 7 HOH A 19 498 26 HOH HOH . H 7 HOH A 20 499 27 HOH HOH . H 7 HOH A 21 500 28 HOH HOH . H 7 HOH A 22 501 29 HOH HOH . H 7 HOH A 23 502 30 HOH HOH . H 7 HOH A 24 503 31 HOH HOH . H 7 HOH A 25 504 32 HOH HOH . H 7 HOH A 26 505 35 HOH HOH . H 7 HOH A 27 506 36 HOH HOH . H 7 HOH A 28 507 37 HOH HOH . H 7 HOH A 29 508 41 HOH HOH . H 7 HOH A 30 509 43 HOH HOH . H 7 HOH A 31 510 45 HOH HOH . H 7 HOH A 32 511 47 HOH HOH . H 7 HOH A 33 512 48 HOH HOH . H 7 HOH A 34 513 49 HOH HOH . H 7 HOH A 35 514 50 HOH HOH . H 7 HOH A 36 515 51 HOH HOH . H 7 HOH A 37 516 53 HOH HOH . H 7 HOH A 38 517 54 HOH HOH . H 7 HOH A 39 518 55 HOH HOH . H 7 HOH A 40 519 56 HOH HOH . H 7 HOH A 41 520 58 HOH HOH . H 7 HOH A 42 521 59 HOH HOH . H 7 HOH A 43 522 60 HOH HOH . H 7 HOH A 44 523 61 HOH HOH . H 7 HOH A 45 524 62 HOH HOH . H 7 HOH A 46 525 63 HOH HOH . H 7 HOH A 47 526 64 HOH HOH . H 7 HOH A 48 527 66 HOH HOH . H 7 HOH A 49 528 67 HOH HOH . H 7 HOH A 50 529 68 HOH HOH . H 7 HOH A 51 530 69 HOH HOH . H 7 HOH A 52 531 70 HOH HOH . H 7 HOH A 53 532 71 HOH HOH . H 7 HOH A 54 533 74 HOH HOH . H 7 HOH A 55 534 75 HOH HOH . H 7 HOH A 56 535 76 HOH HOH . H 7 HOH A 57 536 77 HOH HOH . H 7 HOH A 58 537 78 HOH HOH . H 7 HOH A 59 538 79 HOH HOH . H 7 HOH A 60 539 80 HOH HOH . H 7 HOH A 61 540 81 HOH HOH . H 7 HOH A 62 541 82 HOH HOH . H 7 HOH A 63 542 83 HOH HOH . H 7 HOH A 64 543 84 HOH HOH . H 7 HOH A 65 544 86 HOH HOH . H 7 HOH A 66 545 87 HOH HOH . H 7 HOH A 67 546 88 HOH HOH . H 7 HOH A 68 547 89 HOH HOH . H 7 HOH A 69 548 90 HOH HOH . H 7 HOH A 70 549 91 HOH HOH . H 7 HOH A 71 550 92 HOH HOH . H 7 HOH A 72 551 93 HOH HOH . H 7 HOH A 73 552 94 HOH HOH . H 7 HOH A 74 553 95 HOH HOH . H 7 HOH A 75 554 96 HOH HOH . H 7 HOH A 76 555 98 HOH HOH . H 7 HOH A 77 556 99 HOH HOH . H 7 HOH A 78 557 100 HOH HOH . H 7 HOH A 79 558 101 HOH HOH . H 7 HOH A 80 559 102 HOH HOH . H 7 HOH A 81 560 104 HOH HOH . H 7 HOH A 82 561 106 HOH HOH . H 7 HOH A 83 562 107 HOH HOH . H 7 HOH A 84 563 108 HOH HOH . H 7 HOH A 85 564 109 HOH HOH . H 7 HOH A 86 565 110 HOH HOH . H 7 HOH A 87 566 111 HOH HOH . H 7 HOH A 88 567 121 HOH HOH . H 7 HOH A 89 568 125 HOH HOH . H 7 HOH A 90 569 126 HOH HOH . H 7 HOH A 91 570 127 HOH HOH . H 7 HOH A 92 571 200 HOH HOH . H 7 HOH A 93 572 201 HOH HOH . H 7 HOH A 94 573 202 HOH HOH . H 7 HOH A 95 574 203 HOH HOH . H 7 HOH A 96 575 210 HOH HOH . H 7 HOH A 97 576 206 HOH HOH . H 7 HOH A 98 577 211 HOH HOH . H 7 HOH A 99 578 213 HOH HOH . H 7 HOH A 100 579 214 HOH HOH . H 7 HOH A 101 580 215 HOH HOH . H 7 HOH A 102 581 216 HOH HOH . H 7 HOH A 103 582 218 HOH HOH . H 7 HOH A 104 583 220 HOH HOH . H 7 HOH A 105 584 222 HOH HOH . H 7 HOH A 106 585 223 HOH HOH . H 7 HOH A 107 586 228 HOH HOH . H 7 HOH A 108 587 229 HOH HOH . H 7 HOH A 109 588 230 HOH HOH . H 7 HOH A 110 589 231 HOH HOH . H 7 HOH A 111 590 233 HOH HOH . H 7 HOH A 112 591 235 HOH HOH . H 7 HOH A 113 592 236 HOH HOH . H 7 HOH A 114 593 237 HOH HOH . H 7 HOH A 115 594 238 HOH HOH . H 7 HOH A 116 595 239 HOH HOH . H 7 HOH A 117 596 240 HOH HOH . H 7 HOH A 118 597 241 HOH HOH . H 7 HOH A 119 598 244 HOH HOH . H 7 HOH A 120 599 245 HOH HOH . H 7 HOH A 121 600 247 HOH HOH . H 7 HOH A 122 601 249 HOH HOH . H 7 HOH A 123 602 250 HOH HOH . H 7 HOH A 124 603 252 HOH HOH . H 7 HOH A 125 604 253 HOH HOH . H 7 HOH A 126 605 255 HOH HOH . H 7 HOH A 127 606 259 HOH HOH . H 7 HOH A 128 607 260 HOH HOH . H 7 HOH A 129 608 262 HOH HOH . H 7 HOH A 130 609 264 HOH HOH . H 7 HOH A 131 610 265 HOH HOH . H 7 HOH A 132 611 273 HOH HOH . H 7 HOH A 133 612 279 HOH HOH . H 7 HOH A 134 613 284 HOH HOH . H 7 HOH A 135 614 285 HOH HOH . H 7 HOH A 136 615 287 HOH HOH . H 7 HOH A 137 616 289 HOH HOH . H 7 HOH A 138 617 292 HOH HOH . H 7 HOH A 139 618 293 HOH HOH . H 7 HOH A 140 619 302 HOH HOH . H 7 HOH A 141 620 305 HOH HOH . H 7 HOH A 142 621 307 HOH HOH . H 7 HOH A 143 622 308 HOH HOH . H 7 HOH A 144 623 309 HOH HOH . H 7 HOH A 145 624 313 HOH HOH . H 7 HOH A 146 625 318 HOH HOH . H 7 HOH A 147 626 320 HOH HOH . H 7 HOH A 148 627 322 HOH HOH . H 7 HOH A 149 628 325 HOH HOH . H 7 HOH A 150 629 326 HOH HOH . H 7 HOH A 151 630 329 HOH HOH . H 7 HOH A 152 631 330 HOH HOH . H 7 HOH A 153 632 332 HOH HOH . H 7 HOH A 154 633 333 HOH HOH . H 7 HOH A 155 634 334 HOH HOH . H 7 HOH A 156 635 336 HOH HOH . H 7 HOH A 157 636 337 HOH HOH . H 7 HOH A 158 637 340 HOH HOH . H 7 HOH A 159 638 341 HOH HOH . H 7 HOH A 160 639 345 HOH HOH . H 7 HOH A 161 640 347 HOH HOH . H 7 HOH A 162 641 350 HOH HOH . H 7 HOH A 163 642 355 HOH HOH . H 7 HOH A 164 643 356 HOH HOH . H 7 HOH A 165 644 364 HOH HOH . H 7 HOH A 166 645 369 HOH HOH . H 7 HOH A 167 646 370 HOH HOH . H 7 HOH A 168 647 373 HOH HOH . H 7 HOH A 169 648 374 HOH HOH . H 7 HOH A 170 649 375 HOH HOH . H 7 HOH A 171 650 377 HOH HOH . H 7 HOH A 172 651 383 HOH HOH . H 7 HOH A 173 652 386 HOH HOH . H 7 HOH A 174 653 504 HOH HOH . H 7 HOH A 175 654 509 HOH HOH . H 7 HOH A 176 655 510 HOH HOH . H 7 HOH A 177 656 516 HOH HOH . H 7 HOH A 178 657 519 HOH HOH . H 7 HOH A 179 658 521 HOH HOH . H 7 HOH A 180 659 529 HOH HOH . H 7 HOH A 181 660 531 HOH HOH . H 7 HOH A 182 661 533 HOH HOH . H 7 HOH A 183 662 534 HOH HOH . H 7 HOH A 184 663 539 HOH HOH . H 7 HOH A 185 664 542 HOH HOH . H 7 HOH A 186 665 544 HOH HOH . H 7 HOH A 187 666 560 HOH HOH . H 7 HOH A 188 667 565 HOH HOH . H 7 HOH A 189 668 601 HOH HOH . H 7 HOH A 190 669 602 HOH HOH . H 7 HOH A 191 670 603 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 28.797 _atom_site.Cartn_y 29.924 _atom_site.Cartn_z 62.372 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 478 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #