data_1BJP
#
_model_server_result.job_id            TF8LTdPWg4Cor6dCZfX4vw 
_model_server_result.datetime_utc      '2024-12-21 14:35:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bjp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":63}' 
#
_entry.id    1BJP 
#
_exptl.entry_id    1BJP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.099 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXO-3-PENTENOIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BJP 
_cell.length_a            78.7 
_cell.length_b            78.7 
_cell.length_c            314.6 
_cell.Z_PDB               90 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BJP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS hexameric 6 author_and_software_defined_assembly 1 
PISA,PQS hexameric 6 author_and_software_defined_assembly 2 
PISA,PQS hexameric 6 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,F,G,K,L 1 1,2,3 
C,D,H,I,M,N 2 1,2,3 
E,J,O 3 1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A N PRO 1 A PRO 1 1_555 F C4 OXP . A OXP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale2 B N PRO 1 B PRO 1 1_555 G C4 OXP . B OXP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? 
covale ? covale3 C N PRO 1 C PRO 1 1_555 H C4 OXP . C OXP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? 
covale ? covale4 D N PRO 1 D PRO 1 1_555 I C4 OXP . D OXP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale5 E N PRO 1 E PRO 1 1_555 J C4 OXP . E OXP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? 
#
_chem_comp.formula           'C5 H6 O3' 
_chem_comp.formula_weight    114.099 
_chem_comp.id                OXP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXO-3-PENTENOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 OXP sing 208 n n 
C2 O3 OXP doub 209 n n 
C2 C1 OXP sing 210 n n 
C3 C4 OXP doub 211 z n 
C3 H3 OXP sing 212 n n 
C5 C4 OXP sing 213 n n 
C5 H51 OXP sing 214 n n 
C5 H52 OXP sing 215 n n 
C5 H53 OXP sing 216 n n 
C1 O1 OXP doub 217 n n 
C1 O2 OXP sing 218 n n 
O2 HO2 OXP sing 219 n n 
C4 H4 OXP sing 220 n n 
#
_atom_sites.entry_id                     1BJP 
_atom_sites.fract_transf_matrix[1][1]    0.012706 
_atom_sites.fract_transf_matrix[1][2]    0.007336 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014672 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003179 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 OXP A 1 63 63 OXP OXP . 
G 2 OXP B 1 63 63 OXP OXP . 
H 2 OXP C 1 63 63 OXP OXP . 
I 2 OXP D 1 63 63 OXP OXP . 
J 2 OXP E 1 63 63 OXP OXP . 
K 3 HOH A 1 102 102 HOH HOH . 
K 3 HOH A 2 104 104 HOH HOH . 
K 3 HOH A 3 107 107 HOH HOH . 
K 3 HOH A 4 110 110 HOH HOH . 
K 3 HOH A 5 111 111 HOH HOH . 
K 3 HOH A 6 112 112 HOH HOH . 
K 3 HOH A 7 113 113 HOH HOH . 
K 3 HOH A 8 116 116 HOH HOH . 
K 3 HOH A 9 117 117 HOH HOH . 
K 3 HOH A 10 120 120 HOH HOH . 
K 3 HOH A 11 124 124 HOH HOH . 
K 3 HOH A 12 128 128 HOH HOH . 
K 3 HOH A 13 134 134 HOH HOH . 
K 3 HOH A 14 135 135 HOH HOH . 
K 3 HOH A 15 136 136 HOH HOH . 
K 3 HOH A 16 140 140 HOH HOH . 
K 3 HOH A 17 143 143 HOH HOH . 
K 3 HOH A 18 144 144 HOH HOH . 
K 3 HOH A 19 165 165 HOH HOH . 
K 3 HOH A 20 166 166 HOH HOH . 
K 3 HOH A 21 169 169 HOH HOH . 
K 3 HOH A 22 171 171 HOH HOH . 
K 3 HOH A 23 173 173 HOH HOH . 
K 3 HOH A 24 176 176 HOH HOH . 
L 3 HOH B 1 101 101 HOH HOH . 
L 3 HOH B 2 103 103 HOH HOH . 
L 3 HOH B 3 105 105 HOH HOH . 
L 3 HOH B 4 109 109 HOH HOH . 
L 3 HOH B 5 119 119 HOH HOH . 
L 3 HOH B 6 125 125 HOH HOH . 
L 3 HOH B 7 126 126 HOH HOH . 
L 3 HOH B 8 127 127 HOH HOH . 
L 3 HOH B 9 129 129 HOH HOH . 
L 3 HOH B 10 130 130 HOH HOH . 
L 3 HOH B 11 131 131 HOH HOH . 
L 3 HOH B 12 132 132 HOH HOH . 
L 3 HOH B 13 149 149 HOH HOH . 
L 3 HOH B 14 157 157 HOH HOH . 
L 3 HOH B 15 164 164 HOH HOH . 
L 3 HOH B 16 177 177 HOH HOH . 
L 3 HOH B 17 178 178 HOH HOH . 
M 3 HOH C 1 133 133 HOH HOH . 
M 3 HOH C 2 137 137 HOH HOH . 
M 3 HOH C 3 145 145 HOH HOH . 
M 3 HOH C 4 155 155 HOH HOH . 
M 3 HOH C 5 159 159 HOH HOH . 
N 3 HOH D 1 121 121 HOH HOH . 
N 3 HOH D 2 139 139 HOH HOH . 
N 3 HOH D 3 147 147 HOH HOH . 
N 3 HOH D 4 150 150 HOH HOH . 
N 3 HOH D 5 153 153 HOH HOH . 
N 3 HOH D 6 154 154 HOH HOH . 
O 3 HOH E 1 106 106 HOH HOH . 
O 3 HOH E 2 108 108 HOH HOH . 
O 3 HOH E 3 114 114 HOH HOH . 
O 3 HOH E 4 115 115 HOH HOH . 
O 3 HOH E 5 118 118 HOH HOH . 
O 3 HOH E 6 122 122 HOH HOH . 
O 3 HOH E 7 123 123 HOH HOH . 
O 3 HOH E 8 138 138 HOH HOH . 
O 3 HOH E 9 141 141 HOH HOH . 
O 3 HOH E 10 142 142 HOH HOH . 
O 3 HOH E 11 146 146 HOH HOH . 
O 3 HOH E 12 148 148 HOH HOH . 
O 3 HOH E 13 151 151 HOH HOH . 
O 3 HOH E 14 152 152 HOH HOH . 
O 3 HOH E 15 156 156 HOH HOH . 
O 3 HOH E 16 158 158 HOH HOH . 
O 3 HOH E 17 160 160 HOH HOH . 
O 3 HOH E 18 161 161 HOH HOH . 
O 3 HOH E 19 162 162 HOH HOH . 
O 3 HOH E 20 163 163 HOH HOH . 
O 3 HOH E 21 167 167 HOH HOH . 
O 3 HOH E 22 168 168 HOH HOH . 
O 3 HOH E 23 170 170 HOH HOH . 
O 3 HOH E 24 172 172 HOH HOH . 
O 3 HOH E 25 174 174 HOH HOH . 
O 3 HOH E 26 175 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 OXP . . . J 2 15.957 -1.97 -4.703 1 26.74 ? C2 OXP 63 E 1 
HETATM 2 C C3 OXP . . . J 2 15.36 -3.337 -4.981 1 23.7 ? C3 OXP 63 E 1 
HETATM 3 C C5 OXP . . . J 2 13.009 -2.683 -4.52 1 28.5 ? C5 OXP 63 E 1 
HETATM 4 O O3 OXP . . . J 2 15.325 -1.023 -4.206 1 28.19 ? O3 OXP 63 E 1 
HETATM 5 C C1 OXP . . . J 2 17.385 -1.8 -4.981 1 25.43 ? C1 OXP 63 E 1 
HETATM 6 O O1 OXP . . . J 2 17.803 -2.24 -6.011 1 25.04 ? O1 OXP 63 E 1 
HETATM 7 O O2 OXP . . . J 2 18.202 -1.155 -4.144 1 29.31 ? O2 OXP 63 E 1 
HETATM 8 C C4 OXP . . . J 2 14.056 -3.697 -4.884 1 20.26 ? C4 OXP 63 E 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           8 
#