data_1BJV # _model_server_result.job_id Ey86rIfeH9va_a7AiYdGPg _model_server_result.datetime_utc '2024-12-26 20:57:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 1BJV # _exptl.entry_id 1BJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BJV _cell.length_a 54.36 _cell.length_b 58.2 _cell.length_c 66.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 B CA CA . A CA 246 1_555 G O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc6 B CA CA . A CA 246 1_555 G O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 1BJV _atom_sites.fract_transf_matrix[1][1] 0.018396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 246 246 CA CA . C 3 SO4 A 1 400 400 SO4 SO4 . D 3 SO4 A 1 401 401 SO4 SO4 . E 4 DMS A 1 300 300 DMS DMS . F 5 GP8 A 1 900 900 GP8 GP8 . G 6 HOH A 1 501 501 HOH HOH . G 6 HOH A 2 502 502 HOH HOH . G 6 HOH A 3 503 503 HOH HOH . G 6 HOH A 4 504 504 HOH HOH . G 6 HOH A 5 505 505 HOH HOH . G 6 HOH A 6 506 506 HOH HOH . G 6 HOH A 7 507 507 HOH HOH . G 6 HOH A 8 508 508 HOH HOH . G 6 HOH A 9 509 509 HOH HOH . G 6 HOH A 10 510 510 HOH HOH . G 6 HOH A 11 511 511 HOH HOH . G 6 HOH A 12 512 512 HOH HOH . G 6 HOH A 13 513 513 HOH HOH . G 6 HOH A 14 514 514 HOH HOH . G 6 HOH A 15 515 515 HOH HOH . G 6 HOH A 16 516 516 HOH HOH . G 6 HOH A 17 517 517 HOH HOH . G 6 HOH A 18 518 518 HOH HOH . G 6 HOH A 19 519 519 HOH HOH . G 6 HOH A 20 520 520 HOH HOH . G 6 HOH A 21 521 521 HOH HOH . G 6 HOH A 22 522 522 HOH HOH . G 6 HOH A 23 523 523 HOH HOH . G 6 HOH A 24 524 524 HOH HOH . G 6 HOH A 25 525 525 HOH HOH . G 6 HOH A 26 526 526 HOH HOH . G 6 HOH A 27 527 527 HOH HOH . G 6 HOH A 28 528 528 HOH HOH . G 6 HOH A 29 529 529 HOH HOH . G 6 HOH A 30 530 530 HOH HOH . G 6 HOH A 31 531 531 HOH HOH . G 6 HOH A 32 532 532 HOH HOH . G 6 HOH A 33 533 533 HOH HOH . G 6 HOH A 34 534 534 HOH HOH . G 6 HOH A 35 535 535 HOH HOH . G 6 HOH A 36 536 536 HOH HOH . G 6 HOH A 37 537 537 HOH HOH . G 6 HOH A 38 538 538 HOH HOH . G 6 HOH A 39 539 539 HOH HOH . G 6 HOH A 40 540 540 HOH HOH . G 6 HOH A 41 541 541 HOH HOH . G 6 HOH A 42 542 542 HOH HOH . G 6 HOH A 43 543 543 HOH HOH . G 6 HOH A 44 544 544 HOH HOH . G 6 HOH A 45 545 545 HOH HOH . G 6 HOH A 46 546 546 HOH HOH . G 6 HOH A 47 547 547 HOH HOH . G 6 HOH A 48 548 548 HOH HOH . G 6 HOH A 49 549 549 HOH HOH . G 6 HOH A 50 550 550 HOH HOH . G 6 HOH A 51 551 551 HOH HOH . G 6 HOH A 52 552 552 HOH HOH . G 6 HOH A 53 553 553 HOH HOH . G 6 HOH A 54 554 554 HOH HOH . G 6 HOH A 55 555 555 HOH HOH . G 6 HOH A 56 556 556 HOH HOH . G 6 HOH A 57 557 557 HOH HOH . G 6 HOH A 58 558 558 HOH HOH . G 6 HOH A 59 559 559 HOH HOH . G 6 HOH A 60 560 560 HOH HOH . G 6 HOH A 61 561 561 HOH HOH . G 6 HOH A 62 562 562 HOH HOH . G 6 HOH A 63 563 563 HOH HOH . G 6 HOH A 64 564 564 HOH HOH . G 6 HOH A 65 565 565 HOH HOH . G 6 HOH A 66 566 566 HOH HOH . G 6 HOH A 67 567 567 HOH HOH . G 6 HOH A 68 568 568 HOH HOH . G 6 HOH A 69 569 569 HOH HOH . G 6 HOH A 70 570 570 HOH HOH . G 6 HOH A 71 571 571 HOH HOH . G 6 HOH A 72 572 572 HOH HOH . G 6 HOH A 73 573 573 HOH HOH . G 6 HOH A 74 574 574 HOH HOH . G 6 HOH A 75 575 575 HOH HOH . G 6 HOH A 76 576 576 HOH HOH . G 6 HOH A 77 577 577 HOH HOH . G 6 HOH A 78 578 578 HOH HOH . G 6 HOH A 79 579 579 HOH HOH . G 6 HOH A 80 580 580 HOH HOH . G 6 HOH A 81 581 581 HOH HOH . G 6 HOH A 82 583 583 HOH HOH . G 6 HOH A 83 584 584 HOH HOH . G 6 HOH A 84 585 585 HOH HOH . G 6 HOH A 85 586 586 HOH HOH . G 6 HOH A 86 587 587 HOH HOH . G 6 HOH A 87 588 588 HOH HOH . G 6 HOH A 88 589 589 HOH HOH . G 6 HOH A 89 590 590 HOH HOH . G 6 HOH A 90 591 591 HOH HOH . G 6 HOH A 91 592 592 HOH HOH . G 6 HOH A 92 594 594 HOH HOH . G 6 HOH A 93 595 595 HOH HOH . G 6 HOH A 94 596 596 HOH HOH . G 6 HOH A 95 597 597 HOH HOH . G 6 HOH A 96 598 598 HOH HOH . G 6 HOH A 97 599 599 HOH HOH . G 6 HOH A 98 600 600 HOH HOH . G 6 HOH A 99 601 601 HOH HOH . G 6 HOH A 100 602 602 HOH HOH . G 6 HOH A 101 603 603 HOH HOH . G 6 HOH A 102 604 604 HOH HOH . G 6 HOH A 103 605 605 HOH HOH . G 6 HOH A 104 606 606 HOH HOH . G 6 HOH A 105 607 607 HOH HOH . G 6 HOH A 106 608 608 HOH HOH . G 6 HOH A 107 609 609 HOH HOH . G 6 HOH A 108 610 610 HOH HOH . G 6 HOH A 109 611 611 HOH HOH . G 6 HOH A 110 612 612 HOH HOH . G 6 HOH A 111 613 613 HOH HOH . G 6 HOH A 112 614 614 HOH HOH . G 6 HOH A 113 615 615 HOH HOH . G 6 HOH A 114 616 616 HOH HOH . G 6 HOH A 115 617 617 HOH HOH . G 6 HOH A 116 618 618 HOH HOH . G 6 HOH A 117 619 619 HOH HOH . G 6 HOH A 118 620 620 HOH HOH . G 6 HOH A 119 621 621 HOH HOH . G 6 HOH A 120 623 623 HOH HOH . G 6 HOH A 121 624 624 HOH HOH . G 6 HOH A 122 625 625 HOH HOH . G 6 HOH A 123 626 626 HOH HOH . G 6 HOH A 124 627 627 HOH HOH . G 6 HOH A 125 628 628 HOH HOH . G 6 HOH A 126 629 629 HOH HOH . G 6 HOH A 127 630 630 HOH HOH . G 6 HOH A 128 632 632 HOH HOH . G 6 HOH A 129 633 633 HOH HOH . G 6 HOH A 130 634 634 HOH HOH . G 6 HOH A 131 635 635 HOH HOH . G 6 HOH A 132 636 636 HOH HOH . G 6 HOH A 133 637 637 HOH HOH . G 6 HOH A 134 638 638 HOH HOH . G 6 HOH A 135 639 639 HOH HOH . G 6 HOH A 136 640 640 HOH HOH . G 6 HOH A 137 642 642 HOH HOH . G 6 HOH A 138 643 643 HOH HOH . G 6 HOH A 139 644 644 HOH HOH . G 6 HOH A 140 645 645 HOH HOH . G 6 HOH A 141 646 646 HOH HOH . G 6 HOH A 142 647 647 HOH HOH . G 6 HOH A 143 648 648 HOH HOH . G 6 HOH A 144 649 649 HOH HOH . G 6 HOH A 145 650 650 HOH HOH . G 6 HOH A 146 652 652 HOH HOH . G 6 HOH A 147 653 653 HOH HOH . G 6 HOH A 148 654 654 HOH HOH . G 6 HOH A 149 655 655 HOH HOH . G 6 HOH A 150 658 658 HOH HOH . G 6 HOH A 151 659 659 HOH HOH . G 6 HOH A 152 660 660 HOH HOH . G 6 HOH A 153 661 661 HOH HOH . G 6 HOH A 154 662 662 HOH HOH . G 6 HOH A 155 663 663 HOH HOH . G 6 HOH A 156 664 664 HOH HOH . G 6 HOH A 157 665 665 HOH HOH . G 6 HOH A 158 666 666 HOH HOH . G 6 HOH A 159 667 667 HOH HOH . G 6 HOH A 160 668 668 HOH HOH . G 6 HOH A 161 669 669 HOH HOH . G 6 HOH A 162 673 673 HOH HOH . G 6 HOH A 163 674 674 HOH HOH . G 6 HOH A 164 679 679 HOH HOH . G 6 HOH A 165 680 680 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 -10.752 9.091 39.159 1 20.74 ? S DMS 300 A 1 HETATM 2 O O DMS . . . E 4 -9.431 8.517 39.321 1 19.46 ? O DMS 300 A 1 HETATM 3 C C1 DMS . . . E 4 -11.31 9.431 40.806 1 19.53 ? C1 DMS 300 A 1 HETATM 4 C C2 DMS . . . E 4 -10.5 10.731 38.532 1 14.36 ? C2 DMS 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #