data_1BK9
#
_model_server_result.job_id            4FtJd0Dc5jGswYkoOpawww 
_model_server_result.datetime_utc      '2024-11-22 07:41:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bk9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    1BK9 
#
_exptl.entry_id    1BK9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-BUTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BK9 
_cell.length_a            82.82 
_cell.length_b            82.82 
_cell.length_c            32.8 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BK9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 116 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 124 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
covale ? covale1 A ND1 HIS 47 A HIS 48 1_555 C CH PBP . A PBP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
metalc ? metalc1 A O TYR 27 A TYR 28 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc2 A O GLY 29 A GLY 30 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 A O GLY 31 A GLY 32 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc4 A OD2 ASP 48 A ASP 49 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc5 A OD1 ASP 48 A ASP 49 1_555 B CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BU1 sing 70 n n 
C1 O5 BU1 sing 71 n n 
C1 H11 BU1 sing 72 n n 
C1 H12 BU1 sing 73 n n 
C2 C3 BU1 sing 74 n n 
C2 H21 BU1 sing 75 n n 
C2 H22 BU1 sing 76 n n 
C3 C4 BU1 sing 77 n n 
C3 H31 BU1 sing 78 n n 
C3 H32 BU1 sing 79 n n 
C4 O6 BU1 sing 80 n n 
C4 H41 BU1 sing 81 n n 
C4 H42 BU1 sing 82 n n 
O5 HO5 BU1 sing 83 n n 
O6 HO6 BU1 sing 84 n n 
#
_atom_sites.entry_id                     1BK9 
_atom_sites.fract_transf_matrix[1][1]    0.012074 
_atom_sites.fract_transf_matrix[1][2]    0.006971 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013942 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 200 200 CA CA . 
C 3 PBP A 1 400 400 PBP PBP . 
D 4 BU1 A 1 601 601 BU1 BU1 . 
E 5 HOH A 1 201 201 HOH HOH . 
E 5 HOH A 2 202 202 HOH HOH . 
E 5 HOH A 3 203 203 HOH HOH . 
E 5 HOH A 4 204 204 HOH HOH . 
E 5 HOH A 5 205 205 HOH HOH . 
E 5 HOH A 6 206 206 HOH HOH . 
E 5 HOH A 7 207 207 HOH HOH . 
E 5 HOH A 8 208 208 HOH HOH . 
E 5 HOH A 9 209 209 HOH HOH . 
E 5 HOH A 10 210 210 HOH HOH . 
E 5 HOH A 11 213 213 HOH HOH . 
E 5 HOH A 12 219 219 HOH HOH . 
E 5 HOH A 13 220 220 HOH HOH . 
E 5 HOH A 14 221 221 HOH HOH . 
E 5 HOH A 15 222 222 HOH HOH . 
E 5 HOH A 16 223 223 HOH HOH . 
E 5 HOH A 17 224 224 HOH HOH . 
E 5 HOH A 18 225 225 HOH HOH . 
E 5 HOH A 19 226 226 HOH HOH . 
E 5 HOH A 20 227 227 HOH HOH . 
E 5 HOH A 21 228 228 HOH HOH . 
E 5 HOH A 22 230 230 HOH HOH . 
E 5 HOH A 23 234 234 HOH HOH . 
E 5 HOH A 24 236 236 HOH HOH . 
E 5 HOH A 25 239 239 HOH HOH . 
E 5 HOH A 26 242 242 HOH HOH . 
E 5 HOH A 27 243 243 HOH HOH . 
E 5 HOH A 28 245 245 HOH HOH . 
E 5 HOH A 29 247 247 HOH HOH . 
E 5 HOH A 30 248 248 HOH HOH . 
E 5 HOH A 31 252 252 HOH HOH . 
E 5 HOH A 32 253 253 HOH HOH . 
E 5 HOH A 33 255 255 HOH HOH . 
E 5 HOH A 34 258 258 HOH HOH . 
E 5 HOH A 35 259 259 HOH HOH . 
E 5 HOH A 36 262 262 HOH HOH . 
E 5 HOH A 37 263 263 HOH HOH . 
E 5 HOH A 38 264 264 HOH HOH . 
E 5 HOH A 39 268 268 HOH HOH . 
E 5 HOH A 40 269 269 HOH HOH . 
E 5 HOH A 41 270 270 HOH HOH . 
E 5 HOH A 42 274 274 HOH HOH . 
E 5 HOH A 43 278 278 HOH HOH . 
E 5 HOH A 44 280 280 HOH HOH . 
E 5 HOH A 45 281 281 HOH HOH . 
E 5 HOH A 46 282 282 HOH HOH . 
E 5 HOH A 47 283 283 HOH HOH . 
E 5 HOH A 48 284 284 HOH HOH . 
E 5 HOH A 49 286 286 HOH HOH . 
E 5 HOH A 50 292 292 HOH HOH . 
E 5 HOH A 51 293 293 HOH HOH . 
E 5 HOH A 52 294 294 HOH HOH . 
E 5 HOH A 53 295 295 HOH HOH . 
E 5 HOH A 54 298 298 HOH HOH . 
E 5 HOH A 55 301 301 HOH HOH . 
E 5 HOH A 56 305 305 HOH HOH . 
E 5 HOH A 57 316 316 HOH HOH . 
E 5 HOH A 58 318 318 HOH HOH . 
E 5 HOH A 59 323 323 HOH HOH . 
E 5 HOH A 60 332 332 HOH HOH . 
E 5 HOH A 61 340 340 HOH HOH . 
E 5 HOH A 62 341 341 HOH HOH . 
E 5 HOH A 63 342 342 HOH HOH . 
E 5 HOH A 64 344 344 HOH HOH . 
E 5 HOH A 65 345 345 HOH HOH . 
E 5 HOH A 66 346 346 HOH HOH . 
E 5 HOH A 67 347 347 HOH HOH . 
E 5 HOH A 68 348 348 HOH HOH . 
E 5 HOH A 69 349 349 HOH HOH . 
E 5 HOH A 70 350 350 HOH HOH . 
E 5 HOH A 71 351 351 HOH HOH . 
E 5 HOH A 72 353 353 HOH HOH . 
E 5 HOH A 73 354 354 HOH HOH . 
E 5 HOH A 74 355 355 HOH HOH . 
E 5 HOH A 75 358 358 HOH HOH . 
E 5 HOH A 76 359 359 HOH HOH . 
E 5 HOH A 77 360 360 HOH HOH . 
E 5 HOH A 78 361 361 HOH HOH . 
E 5 HOH A 79 362 362 HOH HOH . 
E 5 HOH A 80 363 363 HOH HOH . 
E 5 HOH A 81 364 364 HOH HOH . 
E 5 HOH A 82 366 366 HOH HOH . 
E 5 HOH A 83 367 367 HOH HOH . 
E 5 HOH A 84 368 368 HOH HOH . 
E 5 HOH A 85 369 369 HOH HOH . 
E 5 HOH A 86 370 370 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BU1 . . . D 4 32.246 52.552 7.196 1 32.51 ? C1 BU1 601 A 1 
HETATM 2 C C2 BU1 . . . D 4 31.388 51.399 7.623 1 32.69 ? C2 BU1 601 A 1 
HETATM 3 C C3 BU1 . . . D 4 31.149 51.401 9.106 1 35.8 ? C3 BU1 601 A 1 
HETATM 4 C C4 BU1 . . . D 4 30.227 50.221 9.359 1 41.26 ? C4 BU1 601 A 1 
HETATM 5 O O5 BU1 . . . D 4 32.693 52.313 5.872 1 34.62 ? O5 BU1 601 A 1 
HETATM 6 O O6 BU1 . . . D 4 29.842 50.128 10.733 1 46.82 ? O6 BU1 601 A 1 
HETATM 7 H HO5 BU1 . . . D 4 33.488 51.77 5.897 1 0 ? HO5 BU1 601 A 1 
HETATM 8 H HO6 BU1 . . . D 4 29.215 49.404 10.833 1 0 ? HO6 BU1 601 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
#