data_1BKE # _model_server_result.job_id -J2GXLNgUgWihSpBcPOEvw _model_server_result.datetime_utc '2024-11-23 05:53:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 1BKE # _exptl.entry_id 1BKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.49 _cell.angle_gamma 90 _cell.entry_id 1BKE _cell.length_a 187.65 _cell.length_b 38.87 _cell.length_c 95.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 53 1_555 A SG CYS 59 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 72 A CYS 75 1_555 A SG CYS 88 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 87 A CYS 90 1_555 A SG CYS 98 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 121 A CYS 124 1_555 A SG CYS 166 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 165 A CYS 168 1_555 A SG CYS 174 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 197 A CYS 200 1_555 A SG CYS 243 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 A SG CYS 242 A CYS 245 1_555 A SG CYS 250 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 262 A CYS 265 1_555 A SG CYS 276 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 A SG CYS 275 A CYS 278 1_555 A SG CYS 286 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 A SG CYS 313 A CYS 316 1_555 A SG CYS 358 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 A SG CYS 357 A CYS 360 1_555 A SG CYS 366 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 A SG CYS 389 A CYS 392 1_555 A SG CYS 435 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 A SG CYS 434 A CYS 437 1_555 A SG CYS 445 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 A SG CYS 458 A CYS 461 1_555 A SG CYS 474 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 473 A CYS 476 1_555 A SG CYS 484 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf16 A SG CYS 511 A CYS 514 1_555 A SG CYS 556 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 A SG CYS 555 A CYS 558 1_555 A SG CYS 564 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 250 n n C1 O2 MYR sing 251 n n C1 C2 MYR sing 252 n n O2 HO2 MYR sing 253 n n C2 C3 MYR sing 254 n n C2 H21 MYR sing 255 n n C2 H22 MYR sing 256 n n C3 C4 MYR sing 257 n n C3 H31 MYR sing 258 n n C3 H32 MYR sing 259 n n C4 C5 MYR sing 260 n n C4 H41 MYR sing 261 n n C4 H42 MYR sing 262 n n C5 C6 MYR sing 263 n n C5 H51 MYR sing 264 n n C5 H52 MYR sing 265 n n C6 C7 MYR sing 266 n n C6 H61 MYR sing 267 n n C6 H62 MYR sing 268 n n C7 C8 MYR sing 269 n n C7 H71 MYR sing 270 n n C7 H72 MYR sing 271 n n C8 C9 MYR sing 272 n n C8 H81 MYR sing 273 n n C8 H82 MYR sing 274 n n C9 C10 MYR sing 275 n n C9 H91 MYR sing 276 n n C9 H92 MYR sing 277 n n C10 C11 MYR sing 278 n n C10 H101 MYR sing 279 n n C10 H102 MYR sing 280 n n C11 C12 MYR sing 281 n n C11 H111 MYR sing 282 n n C11 H112 MYR sing 283 n n C12 C13 MYR sing 284 n n C12 H121 MYR sing 285 n n C12 H122 MYR sing 286 n n C13 C14 MYR sing 287 n n C13 H131 MYR sing 288 n n C13 H132 MYR sing 289 n n C14 H141 MYR sing 290 n n C14 H142 MYR sing 291 n n C14 H143 MYR sing 292 n n # _atom_sites.entry_id 1BKE _atom_sites.fract_transf_matrix[1][1] 0.005329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001477 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1001 1001 MYR MYR . C 2 MYR A 1 1002 1002 MYR MYR . D 2 MYR A 1 1003 1003 MYR MYR . E 2 MYR A 1 1004 1004 MYR MYR . F 2 MYR A 1 1005 1005 MYR MYR . G 3 B3I A 1 2001 2001 B3I B3I . H 3 B3I A 1 2002 2002 B3I B3I . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . F 2 1.28 12.271 38.291 1 52.96 ? C1 MYR 1005 A 1 HETATM 2 O O1 MYR . . . F 2 0.047 12.299 38.495 1 52.96 ? O1 MYR 1005 A 1 HETATM 3 O O2 MYR . . . F 2 2.047 13.188 38.644 1 52.96 ? O2 MYR 1005 A 1 HETATM 4 C C2 MYR . . . F 2 1.869 11.064 37.584 1 52.96 ? C2 MYR 1005 A 1 HETATM 5 C C3 MYR . . . F 2 0.839 9.975 37.348 1 52.96 ? C3 MYR 1005 A 1 HETATM 6 C C4 MYR . . . F 2 0.952 8.887 38.397 1 52.96 ? C4 MYR 1005 A 1 HETATM 7 C C5 MYR . . . F 2 0.404 7.586 37.864 1 52.96 ? C5 MYR 1005 A 1 HETATM 8 C C6 MYR . . . F 2 0.476 6.493 38.902 1 52.96 ? C6 MYR 1005 A 1 HETATM 9 C C7 MYR . . . F 2 -0.859 5.788 38.988 1 52.96 ? C7 MYR 1005 A 1 HETATM 10 C C8 MYR . . . F 2 -0.787 4.519 39.82 1 52.96 ? C8 MYR 1005 A 1 HETATM 11 C C9 MYR . . . F 2 -2.055 4.359 40.645 1 52.96 ? C9 MYR 1005 A 1 HETATM 12 C C10 MYR . . . F 2 -2.242 2.932 41.115 1 52.96 ? C10 MYR 1005 A 1 HETATM 13 C C11 MYR . . . F 2 -3.711 2.596 41.298 1 52.96 ? C11 MYR 1005 A 1 HETATM 14 C C12 MYR . . . F 2 -3.917 1.099 41.466 1 52.96 ? C12 MYR 1005 A 1 HETATM 15 C C13 MYR . . . F 2 -4.97 0.565 40.5 1 52.96 ? C13 MYR 1005 A 1 HETATM 16 C C14 MYR . . . F 2 -4.933 -0.953 40.395 1 52.96 ? C14 MYR 1005 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #