data_1BKE # _model_server_result.job_id rWG6M47dsWKThU2hweBcaA _model_server_result.datetime_utc '2025-02-26 22:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2001}' # _entry.id 1BKE # _exptl.entry_id 1BKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.811 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3,5-TRIIODOBENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.49 _cell.angle_gamma 90 _cell.entry_id 1BKE _cell.length_a 187.65 _cell.length_b 38.87 _cell.length_c 95.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 53 1_555 A SG CYS 59 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 72 A CYS 75 1_555 A SG CYS 88 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 87 A CYS 90 1_555 A SG CYS 98 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 121 A CYS 124 1_555 A SG CYS 166 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 165 A CYS 168 1_555 A SG CYS 174 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 197 A CYS 200 1_555 A SG CYS 243 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 A SG CYS 242 A CYS 245 1_555 A SG CYS 250 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 262 A CYS 265 1_555 A SG CYS 276 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 A SG CYS 275 A CYS 278 1_555 A SG CYS 286 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 A SG CYS 313 A CYS 316 1_555 A SG CYS 358 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 A SG CYS 357 A CYS 360 1_555 A SG CYS 366 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 A SG CYS 389 A CYS 392 1_555 A SG CYS 435 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf13 A SG CYS 434 A CYS 437 1_555 A SG CYS 445 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 A SG CYS 458 A CYS 461 1_555 A SG CYS 474 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 473 A CYS 476 1_555 A SG CYS 484 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf16 A SG CYS 511 A CYS 514 1_555 A SG CYS 556 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 A SG CYS 555 A CYS 558 1_555 A SG CYS 564 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C7 H3 I3 O2' _chem_comp.formula_weight 499.811 _chem_comp.id B3I _chem_comp.mon_nstd_flag . _chem_comp.name '2,3,5-TRIIODOBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 B3I doub 70 n y C2 C1 B3I sing 71 n y C2 I1 B3I sing 72 n n C3 C4 B3I sing 73 n y C3 I2 B3I sing 74 n n C5 C6 B3I sing 75 n y C5 C4 B3I doub 76 n y C5 I3 B3I sing 77 n n C6 C1 B3I doub 78 n y C6 H6 B3I sing 79 n n C O1 B3I doub 80 n n C O2 B3I sing 81 n n C C1 B3I sing 82 n n O2 HO2 B3I sing 83 n n C4 H4 B3I sing 84 n n # _atom_sites.entry_id 1BKE _atom_sites.fract_transf_matrix[1][1] 0.005329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001477 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1001 1001 MYR MYR . C 2 MYR A 1 1002 1002 MYR MYR . D 2 MYR A 1 1003 1003 MYR MYR . E 2 MYR A 1 1004 1004 MYR MYR . F 2 MYR A 1 1005 1005 MYR MYR . G 3 B3I A 1 2001 2001 B3I B3I . H 3 B3I A 1 2002 2002 B3I B3I . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 B3I . A . G 3 35.125 14.574 9.746 0.62 50.12 ? C2 B3I 2001 A 1 HETATM 2 C C2 B3I . B . G 3 33.125 15.383 8.499 0.12 50.12 ? C2 B3I 2001 A 1 HETATM 3 C C3 B3I . A . G 3 35.963 15.392 8.917 0.62 50.12 ? C3 B3I 2001 A 1 HETATM 4 C C3 B3I . B . G 3 34.007 16.114 7.666 0.12 50.12 ? C3 B3I 2001 A 1 HETATM 5 C C5 B3I . A . G 3 34.015 16.034 7.632 0.62 50.12 ? C5 B3I 2001 A 1 HETATM 6 C C5 B3I . B . G 3 35.946 15.199 8.861 0.12 50.12 ? C5 B3I 2001 A 1 HETATM 7 C C6 B3I . A . G 3 33.187 15.252 8.436 0.62 50.12 ? C6 B3I 2001 A 1 HETATM 8 C C6 B3I . B . G 3 35.07 14.454 9.71 0.12 50.12 ? C6 B3I 2001 A 1 HETATM 9 C C B3I . A . G 3 32.858 13.74 10.276 0.62 50.12 ? C B3I 2001 A 1 HETATM 10 C C B3I . B . G 3 32.793 13.81 10.369 0.12 50.12 ? C B3I 2001 A 1 HETATM 11 O O1 B3I . A . G 3 32.87 12.489 10.188 0.62 50.12 ? O1 B3I 2001 A 1 HETATM 12 O O1 B3I . B . G 3 32.221 14.367 11.335 0.12 50.12 ? O1 B3I 2001 A 1 HETATM 13 O O2 B3I . A . G 3 32.054 14.303 11.062 0.62 50.12 ? O2 B3I 2001 A 1 HETATM 14 O O2 B3I . B . G 3 32.592 12.584 10.156 0.12 50.12 ? O2 B3I 2001 A 1 HETATM 15 C C1 B3I . A . G 3 33.719 14.514 9.496 0.62 50.12 ? C1 B3I 2001 A 1 HETATM 16 C C1 B3I . B . G 3 33.652 14.541 9.531 0.12 50.12 ? C1 B3I 2001 A 1 HETATM 17 C C4 B3I . A . G 3 35.391 16.116 7.857 0.62 50.12 ? C4 B3I 2001 A 1 HETATM 18 C C4 B3I . B . G 3 35.409 16.02 7.844 0.12 50.12 ? C4 B3I 2001 A 1 HETATM 19 I I1 B3I . A . G 3 35.944 13.504 11.255 0.62 50.12 ? I1 B3I 2001 A 1 HETATM 20 I I1 B3I . B . G 3 31.113 15.56 8.197 0.12 50.12 ? I1 B3I 2001 A 1 HETATM 21 I I2 B3I . A . G 3 38.003 15.526 9.23 0.62 50.12 ? I2 B3I 2001 A 1 HETATM 22 I I2 B3I . B . G 3 33.241 17.303 6.192 0.12 50.12 ? I2 B3I 2001 A 1 HETATM 23 I I3 B3I . A . G 3 33.176 17.035 6.112 0.62 50.12 ? I3 B3I 2001 A 1 HETATM 24 I I3 B3I . B . G 3 37.994 15.084 9.103 0.12 50.12 ? I3 B3I 2001 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 507 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 24 #