data_1BKJ # _model_server_result.job_id Aa95EKa4GxG0PdpnUCgmUQ _model_server_result.datetime_utc '2025-06-28 16:13:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":241}' # _entry.id 1BKJ # _exptl.entry_id 1BKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.3 _cell.angle_gamma 90 _cell.entry_id 1BKJ _cell.length_a 51.2 _cell.length_b 85.9 _cell.length_c 58.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1BKJ _atom_sites.fract_transf_matrix[1][1] 0.019531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00684 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 999 999 PO4 PO4 . D 3 FMN A 1 241 241 FMN FMN . E 2 PO4 B 1 999 999 PO4 PO4 . F 3 FMN B 1 241 241 FMN FMN . G 4 HOH A 1 301 301 HOH HOH . G 4 HOH A 2 302 302 HOH HOH . G 4 HOH A 3 303 303 HOH HOH . G 4 HOH A 4 304 304 HOH HOH . G 4 HOH A 5 305 305 HOH HOH . G 4 HOH A 6 306 306 HOH HOH . G 4 HOH A 7 307 307 HOH HOH . G 4 HOH A 8 308 308 HOH HOH . G 4 HOH A 9 309 309 HOH HOH . G 4 HOH A 10 310 310 HOH HOH . G 4 HOH A 11 311 311 HOH HOH . G 4 HOH A 12 312 312 HOH HOH . G 4 HOH A 13 313 313 HOH HOH . G 4 HOH A 14 314 314 HOH HOH . G 4 HOH A 15 315 315 HOH HOH . G 4 HOH A 16 316 316 HOH HOH . G 4 HOH A 17 317 317 HOH HOH . G 4 HOH A 18 318 318 HOH HOH . G 4 HOH A 19 319 319 HOH HOH . G 4 HOH A 20 320 320 HOH HOH . G 4 HOH A 21 323 323 HOH HOH . G 4 HOH A 22 324 324 HOH HOH . G 4 HOH A 23 327 327 HOH HOH . G 4 HOH A 24 328 328 HOH HOH . G 4 HOH A 25 335 335 HOH HOH . G 4 HOH A 26 342 342 HOH HOH . G 4 HOH A 27 344 344 HOH HOH . G 4 HOH A 28 348 348 HOH HOH . G 4 HOH A 29 349 349 HOH HOH . G 4 HOH A 30 351 351 HOH HOH . G 4 HOH A 31 352 352 HOH HOH . G 4 HOH A 32 355 355 HOH HOH . G 4 HOH A 33 356 356 HOH HOH . G 4 HOH A 34 357 357 HOH HOH . G 4 HOH A 35 359 359 HOH HOH . G 4 HOH A 36 360 360 HOH HOH . G 4 HOH A 37 365 365 HOH HOH . G 4 HOH A 38 366 366 HOH HOH . G 4 HOH A 39 368 368 HOH HOH . G 4 HOH A 40 369 369 HOH HOH . G 4 HOH A 41 370 370 HOH HOH . G 4 HOH A 42 371 371 HOH HOH . G 4 HOH A 43 372 372 HOH HOH . G 4 HOH A 44 373 373 HOH HOH . G 4 HOH A 45 374 374 HOH HOH . G 4 HOH A 46 375 375 HOH HOH . G 4 HOH A 47 382 382 HOH HOH . G 4 HOH A 48 385 385 HOH HOH . G 4 HOH A 49 386 386 HOH HOH . G 4 HOH A 50 387 387 HOH HOH . G 4 HOH A 51 388 388 HOH HOH . G 4 HOH A 52 389 389 HOH HOH . G 4 HOH A 53 393 393 HOH HOH . G 4 HOH A 54 399 399 HOH HOH . G 4 HOH A 55 400 400 HOH HOH . G 4 HOH A 56 401 401 HOH HOH . G 4 HOH A 57 402 402 HOH HOH . G 4 HOH A 58 403 403 HOH HOH . G 4 HOH A 59 407 407 HOH HOH . H 4 HOH B 1 321 321 HOH HOH . H 4 HOH B 2 322 322 HOH HOH . H 4 HOH B 3 325 325 HOH HOH . H 4 HOH B 4 326 326 HOH HOH . H 4 HOH B 5 329 329 HOH HOH . H 4 HOH B 6 330 330 HOH HOH . H 4 HOH B 7 331 331 HOH HOH . H 4 HOH B 8 332 332 HOH HOH . H 4 HOH B 9 333 333 HOH HOH . H 4 HOH B 10 334 334 HOH HOH . H 4 HOH B 11 336 336 HOH HOH . H 4 HOH B 12 337 337 HOH HOH . H 4 HOH B 13 338 338 HOH HOH . H 4 HOH B 14 339 339 HOH HOH . H 4 HOH B 15 340 340 HOH HOH . H 4 HOH B 16 341 341 HOH HOH . H 4 HOH B 17 343 343 HOH HOH . H 4 HOH B 18 345 345 HOH HOH . H 4 HOH B 19 346 346 HOH HOH . H 4 HOH B 20 347 347 HOH HOH . H 4 HOH B 21 350 350 HOH HOH . H 4 HOH B 22 353 353 HOH HOH . H 4 HOH B 23 354 354 HOH HOH . H 4 HOH B 24 358 358 HOH HOH . H 4 HOH B 25 361 361 HOH HOH . H 4 HOH B 26 362 362 HOH HOH . H 4 HOH B 27 363 363 HOH HOH . H 4 HOH B 28 364 364 HOH HOH . H 4 HOH B 29 367 367 HOH HOH . H 4 HOH B 30 376 376 HOH HOH . H 4 HOH B 31 377 377 HOH HOH . H 4 HOH B 32 378 378 HOH HOH . H 4 HOH B 33 379 379 HOH HOH . H 4 HOH B 34 380 380 HOH HOH . H 4 HOH B 35 381 381 HOH HOH . H 4 HOH B 36 383 383 HOH HOH . H 4 HOH B 37 384 384 HOH HOH . H 4 HOH B 38 390 390 HOH HOH . H 4 HOH B 39 391 391 HOH HOH . H 4 HOH B 40 392 392 HOH HOH . H 4 HOH B 41 394 394 HOH HOH . H 4 HOH B 42 395 395 HOH HOH . H 4 HOH B 43 396 396 HOH HOH . H 4 HOH B 44 397 397 HOH HOH . H 4 HOH B 45 398 398 HOH HOH . H 4 HOH B 46 404 404 HOH HOH . H 4 HOH B 47 405 405 HOH HOH . H 4 HOH B 48 406 406 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 -7.016 -3.043 8.322 1 12.32 ? N1 FMN 241 A 1 HETATM 2 C C2 FMN . . . D 3 -7.483 -3.441 7.091 1 12.77 ? C2 FMN 241 A 1 HETATM 3 O O2 FMN . . . D 3 -8.401 -4.199 6.909 1 13.92 ? O2 FMN 241 A 1 HETATM 4 N N3 FMN . . . D 3 -6.723 -2.942 6.042 1 13.1 ? N3 FMN 241 A 1 HETATM 5 C C4 FMN . . . D 3 -5.459 -2.287 6.127 1 12.97 ? C4 FMN 241 A 1 HETATM 6 O O4 FMN . . . D 3 -4.876 -2.036 5.088 1 14.65 ? O4 FMN 241 A 1 HETATM 7 C C4A FMN . . . D 3 -5.021 -2.012 7.465 1 12.67 ? C4A FMN 241 A 1 HETATM 8 N N5 FMN . . . D 3 -3.941 -1.145 7.579 1 12.23 ? N5 FMN 241 A 1 HETATM 9 C C5A FMN . . . D 3 -3.608 -0.586 8.822 1 11.5 ? C5A FMN 241 A 1 HETATM 10 C C6 FMN . . . D 3 -2.617 0.378 8.845 1 11.86 ? C6 FMN 241 A 1 HETATM 11 C C7 FMN . . . D 3 -2.287 1.013 10.041 1 11.58 ? C7 FMN 241 A 1 HETATM 12 C C7M FMN . . . D 3 -1.318 2.23 9.954 1 11.89 ? C7M FMN 241 A 1 HETATM 13 C C8 FMN . . . D 3 -2.944 0.631 11.246 1 11.79 ? C8 FMN 241 A 1 HETATM 14 C C8M FMN . . . D 3 -2.567 1.157 12.592 1 10.46 ? C8M FMN 241 A 1 HETATM 15 C C9 FMN . . . D 3 -3.928 -0.323 11.232 1 11.32 ? C9 FMN 241 A 1 HETATM 16 C C9A FMN . . . D 3 -4.298 -0.956 10.005 1 11.7 ? C9A FMN 241 A 1 HETATM 17 N N10 FMN . . . D 3 -5.383 -1.9 9.889 1 12.66 ? N10 FMN 241 A 1 HETATM 18 C C10 FMN . . . D 3 -5.811 -2.357 8.616 1 12.23 ? C10 FMN 241 A 1 HETATM 19 C C1' FMN . . . D 3 -6.217 -2.159 10.936 1 12.59 ? C1' FMN 241 A 1 HETATM 20 C C2' FMN . . . D 3 -5.996 -3.436 11.713 1 13.09 ? C2' FMN 241 A 1 HETATM 21 O O2' FMN . . . D 3 -5.635 -4.604 11.108 1 13.3 ? O2' FMN 241 A 1 HETATM 22 C C3' FMN . . . D 3 -6.272 -3.41 13.158 1 14.23 ? C3' FMN 241 A 1 HETATM 23 O O3' FMN . . . D 3 -6.048 -2.19 13.818 1 14.76 ? O3' FMN 241 A 1 HETATM 24 C C4' FMN . . . D 3 -6.126 -4.62 14.04 1 14.16 ? C4' FMN 241 A 1 HETATM 25 O O4' FMN . . . D 3 -6.036 -5.901 13.464 1 17.45 ? O4' FMN 241 A 1 HETATM 26 C C5' FMN . . . D 3 -6.476 -4.556 15.449 1 14.17 ? C5' FMN 241 A 1 HETATM 27 O O5' FMN . . . D 3 -7.934 -4.612 15.398 1 14.48 ? O5' FMN 241 A 1 HETATM 28 P P FMN . . . D 3 -8.927 -3.394 15.83 1 14.02 ? P FMN 241 A 1 HETATM 29 O O1P FMN . . . D 3 -8.739 -3.291 17.265 1 14.95 ? O1P FMN 241 A 1 HETATM 30 O O2P FMN . . . D 3 -10.248 -3.86 15.342 1 14.16 ? O2P FMN 241 A 1 HETATM 31 O O3P FMN . . . D 3 -8.439 -2.132 15.226 1 15.05 ? O3P FMN 241 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #