data_1BKS # _model_server_result.job_id 36xZnwxtit0Y0bh_wcdWnQ _model_server_result.datetime_utc '2025-03-05 18:08:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1BKS # _exptl.entry_id 1BKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.69 _cell.angle_gamma 90 _cell.entry_id 1BKS _cell.length_a 184.58 _cell.length_b 62.065 _cell.length_c 67.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 184.58 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 87 B LYS 87 1_555 D C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 B O GLY 232 B GLY 232 1_555 C NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 B O PHE 306 B PHE 306 1_555 C NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 B O SER 308 B SER 308 1_555 C NA NA . B NA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 C NA NA . B NA 400 1_555 F O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc5 C NA NA . B NA 400 1_555 F O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BKS _atom_sites.fract_transf_matrix[1][1] 0.005418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000444 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA B 1 400 400 NA NA . D 4 PLP B 1 401 87 PLP PLP . E 5 HOH A 1 403 403 HOH HOH . E 5 HOH A 2 404 404 HOH HOH . E 5 HOH A 3 405 405 HOH HOH . E 5 HOH A 4 406 406 HOH HOH . E 5 HOH A 5 407 407 HOH HOH . E 5 HOH A 6 408 408 HOH HOH . E 5 HOH A 7 409 409 HOH HOH . E 5 HOH A 8 410 410 HOH HOH . E 5 HOH A 9 411 411 HOH HOH . E 5 HOH A 10 412 412 HOH HOH . E 5 HOH A 11 427 427 HOH HOH . E 5 HOH A 12 430 430 HOH HOH . E 5 HOH A 13 435 435 HOH HOH . E 5 HOH A 14 436 436 HOH HOH . E 5 HOH A 15 448 448 HOH HOH . E 5 HOH A 16 452 452 HOH HOH . E 5 HOH A 17 453 453 HOH HOH . E 5 HOH A 18 460 460 HOH HOH . E 5 HOH A 19 462 462 HOH HOH . E 5 HOH A 20 464 464 HOH HOH . E 5 HOH A 21 466 466 HOH HOH . E 5 HOH A 22 468 468 HOH HOH . E 5 HOH A 23 471 471 HOH HOH . E 5 HOH A 24 481 481 HOH HOH . E 5 HOH A 25 482 482 HOH HOH . E 5 HOH A 26 484 484 HOH HOH . E 5 HOH A 27 485 485 HOH HOH . E 5 HOH A 28 489 489 HOH HOH . E 5 HOH A 29 494 494 HOH HOH . E 5 HOH A 30 495 495 HOH HOH . E 5 HOH A 31 501 501 HOH HOH . E 5 HOH A 32 502 502 HOH HOH . E 5 HOH A 33 503 503 HOH HOH . E 5 HOH A 34 510 510 HOH HOH . E 5 HOH A 35 512 512 HOH HOH . E 5 HOH A 36 519 519 HOH HOH . E 5 HOH A 37 520 520 HOH HOH . E 5 HOH A 38 521 521 HOH HOH . E 5 HOH A 39 524 524 HOH HOH . E 5 HOH A 40 525 525 HOH HOH . E 5 HOH A 41 528 528 HOH HOH . E 5 HOH A 42 532 532 HOH HOH . E 5 HOH A 43 533 533 HOH HOH . E 5 HOH A 44 535 535 HOH HOH . E 5 HOH A 45 536 536 HOH HOH . E 5 HOH A 46 541 541 HOH HOH . E 5 HOH A 47 542 542 HOH HOH . E 5 HOH A 48 543 543 HOH HOH . E 5 HOH A 49 545 545 HOH HOH . E 5 HOH A 50 547 547 HOH HOH . E 5 HOH A 51 549 549 HOH HOH . E 5 HOH A 52 551 551 HOH HOH . E 5 HOH A 53 552 552 HOH HOH . E 5 HOH A 54 560 560 HOH HOH . E 5 HOH A 55 562 562 HOH HOH . E 5 HOH A 56 565 565 HOH HOH . E 5 HOH A 57 568 568 HOH HOH . E 5 HOH A 58 573 573 HOH HOH . E 5 HOH A 59 575 575 HOH HOH . E 5 HOH A 60 578 578 HOH HOH . E 5 HOH A 61 579 579 HOH HOH . E 5 HOH A 62 581 581 HOH HOH . E 5 HOH A 63 582 582 HOH HOH . E 5 HOH A 64 584 584 HOH HOH . E 5 HOH A 65 586 586 HOH HOH . E 5 HOH A 66 587 587 HOH HOH . E 5 HOH A 67 590 590 HOH HOH . E 5 HOH A 68 591 591 HOH HOH . E 5 HOH A 69 592 592 HOH HOH . E 5 HOH A 70 593 593 HOH HOH . E 5 HOH A 71 594 594 HOH HOH . E 5 HOH A 72 601 601 HOH HOH . E 5 HOH A 73 602 602 HOH HOH . E 5 HOH A 74 603 603 HOH HOH . E 5 HOH A 75 606 606 HOH HOH . E 5 HOH A 76 607 607 HOH HOH . E 5 HOH A 77 608 608 HOH HOH . E 5 HOH A 78 609 609 HOH HOH . E 5 HOH A 79 610 610 HOH HOH . E 5 HOH A 80 611 611 HOH HOH . E 5 HOH A 81 618 618 HOH HOH . E 5 HOH A 82 620 620 HOH HOH . E 5 HOH A 83 624 624 HOH HOH . E 5 HOH A 84 631 631 HOH HOH . E 5 HOH A 85 636 636 HOH HOH . E 5 HOH A 86 640 640 HOH HOH . E 5 HOH A 87 652 652 HOH HOH . E 5 HOH A 88 653 653 HOH HOH . E 5 HOH A 89 655 655 HOH HOH . E 5 HOH A 90 656 656 HOH HOH . E 5 HOH A 91 657 657 HOH HOH . E 5 HOH A 92 658 658 HOH HOH . E 5 HOH A 93 659 659 HOH HOH . E 5 HOH A 94 660 660 HOH HOH . E 5 HOH A 95 661 661 HOH HOH . E 5 HOH A 96 662 662 HOH HOH . E 5 HOH A 97 664 664 HOH HOH . E 5 HOH A 98 665 665 HOH HOH . E 5 HOH A 99 666 666 HOH HOH . E 5 HOH A 100 667 667 HOH HOH . E 5 HOH A 101 668 668 HOH HOH . E 5 HOH A 102 669 669 HOH HOH . E 5 HOH A 103 670 670 HOH HOH . E 5 HOH A 104 671 671 HOH HOH . E 5 HOH A 105 672 672 HOH HOH . F 5 HOH B 1 402 401 HOH HOH . F 5 HOH B 2 403 402 HOH HOH . F 5 HOH B 3 404 413 HOH HOH . F 5 HOH B 4 405 414 HOH HOH . F 5 HOH B 5 406 415 HOH HOH . F 5 HOH B 6 407 416 HOH HOH . F 5 HOH B 7 408 417 HOH HOH . F 5 HOH B 8 409 418 HOH HOH . F 5 HOH B 9 410 419 HOH HOH . F 5 HOH B 10 411 420 HOH HOH . F 5 HOH B 11 412 421 HOH HOH . F 5 HOH B 12 413 422 HOH HOH . F 5 HOH B 13 414 423 HOH HOH . F 5 HOH B 14 415 424 HOH HOH . F 5 HOH B 15 416 425 HOH HOH . F 5 HOH B 16 417 426 HOH HOH . F 5 HOH B 17 418 428 HOH HOH . F 5 HOH B 18 419 429 HOH HOH . F 5 HOH B 19 420 431 HOH HOH . F 5 HOH B 20 421 432 HOH HOH . F 5 HOH B 21 422 433 HOH HOH . F 5 HOH B 22 423 434 HOH HOH . F 5 HOH B 23 424 437 HOH HOH . F 5 HOH B 24 425 438 HOH HOH . F 5 HOH B 25 426 439 HOH HOH . F 5 HOH B 26 427 440 HOH HOH . F 5 HOH B 27 428 441 HOH HOH . F 5 HOH B 28 429 442 HOH HOH . F 5 HOH B 29 430 443 HOH HOH . F 5 HOH B 30 431 444 HOH HOH . F 5 HOH B 31 432 445 HOH HOH . F 5 HOH B 32 433 446 HOH HOH . F 5 HOH B 33 434 447 HOH HOH . F 5 HOH B 34 435 449 HOH HOH . F 5 HOH B 35 436 450 HOH HOH . F 5 HOH B 36 437 451 HOH HOH . F 5 HOH B 37 438 454 HOH HOH . F 5 HOH B 38 439 455 HOH HOH . F 5 HOH B 39 440 456 HOH HOH . F 5 HOH B 40 441 457 HOH HOH . F 5 HOH B 41 442 458 HOH HOH . F 5 HOH B 42 443 459 HOH HOH . F 5 HOH B 43 444 461 HOH HOH . F 5 HOH B 44 445 463 HOH HOH . F 5 HOH B 45 446 465 HOH HOH . F 5 HOH B 46 447 467 HOH HOH . F 5 HOH B 47 448 469 HOH HOH . F 5 HOH B 48 449 470 HOH HOH . F 5 HOH B 49 450 472 HOH HOH . F 5 HOH B 50 451 473 HOH HOH . F 5 HOH B 51 452 474 HOH HOH . F 5 HOH B 52 453 475 HOH HOH . F 5 HOH B 53 454 476 HOH HOH . F 5 HOH B 54 455 477 HOH HOH . F 5 HOH B 55 456 478 HOH HOH . F 5 HOH B 56 457 479 HOH HOH . F 5 HOH B 57 458 480 HOH HOH . F 5 HOH B 58 459 483 HOH HOH . F 5 HOH B 59 460 486 HOH HOH . F 5 HOH B 60 461 487 HOH HOH . F 5 HOH B 61 462 488 HOH HOH . F 5 HOH B 62 463 490 HOH HOH . F 5 HOH B 63 464 491 HOH HOH . F 5 HOH B 64 465 492 HOH HOH . F 5 HOH B 65 466 493 HOH HOH . F 5 HOH B 66 467 496 HOH HOH . F 5 HOH B 67 468 497 HOH HOH . F 5 HOH B 68 469 498 HOH HOH . F 5 HOH B 69 470 499 HOH HOH . F 5 HOH B 70 471 500 HOH HOH . F 5 HOH B 71 472 504 HOH HOH . F 5 HOH B 72 473 505 HOH HOH . F 5 HOH B 73 474 506 HOH HOH . F 5 HOH B 74 475 507 HOH HOH . F 5 HOH B 75 476 508 HOH HOH . F 5 HOH B 76 477 509 HOH HOH . F 5 HOH B 77 478 511 HOH HOH . F 5 HOH B 78 479 513 HOH HOH . F 5 HOH B 79 480 514 HOH HOH . F 5 HOH B 80 481 515 HOH HOH . F 5 HOH B 81 482 516 HOH HOH . F 5 HOH B 82 483 517 HOH HOH . F 5 HOH B 83 484 518 HOH HOH . F 5 HOH B 84 485 522 HOH HOH . F 5 HOH B 85 486 523 HOH HOH . F 5 HOH B 86 487 526 HOH HOH . F 5 HOH B 87 488 527 HOH HOH . F 5 HOH B 88 489 529 HOH HOH . F 5 HOH B 89 490 530 HOH HOH . F 5 HOH B 90 491 531 HOH HOH . F 5 HOH B 91 492 534 HOH HOH . F 5 HOH B 92 493 537 HOH HOH . F 5 HOH B 93 494 538 HOH HOH . F 5 HOH B 94 495 539 HOH HOH . F 5 HOH B 95 496 540 HOH HOH . F 5 HOH B 96 497 544 HOH HOH . F 5 HOH B 97 498 546 HOH HOH . F 5 HOH B 98 499 548 HOH HOH . F 5 HOH B 99 500 550 HOH HOH . F 5 HOH B 100 501 553 HOH HOH . F 5 HOH B 101 502 554 HOH HOH . F 5 HOH B 102 503 555 HOH HOH . F 5 HOH B 103 504 556 HOH HOH . F 5 HOH B 104 505 557 HOH HOH . F 5 HOH B 105 506 558 HOH HOH . F 5 HOH B 106 507 559 HOH HOH . F 5 HOH B 107 508 561 HOH HOH . F 5 HOH B 108 509 563 HOH HOH . F 5 HOH B 109 510 564 HOH HOH . F 5 HOH B 110 511 566 HOH HOH . F 5 HOH B 111 512 567 HOH HOH . F 5 HOH B 112 513 569 HOH HOH . F 5 HOH B 113 514 570 HOH HOH . F 5 HOH B 114 515 571 HOH HOH . F 5 HOH B 115 516 572 HOH HOH . F 5 HOH B 116 517 574 HOH HOH . F 5 HOH B 117 518 576 HOH HOH . F 5 HOH B 118 519 577 HOH HOH . F 5 HOH B 119 520 580 HOH HOH . F 5 HOH B 120 521 583 HOH HOH . F 5 HOH B 121 522 585 HOH HOH . F 5 HOH B 122 523 588 HOH HOH . F 5 HOH B 123 524 589 HOH HOH . F 5 HOH B 124 525 595 HOH HOH . F 5 HOH B 125 526 596 HOH HOH . F 5 HOH B 126 527 597 HOH HOH . F 5 HOH B 127 528 598 HOH HOH . F 5 HOH B 128 529 599 HOH HOH . F 5 HOH B 129 530 600 HOH HOH . F 5 HOH B 130 531 604 HOH HOH . F 5 HOH B 131 532 605 HOH HOH . F 5 HOH B 132 533 612 HOH HOH . F 5 HOH B 133 534 613 HOH HOH . F 5 HOH B 134 535 614 HOH HOH . F 5 HOH B 135 536 615 HOH HOH . F 5 HOH B 136 537 616 HOH HOH . F 5 HOH B 137 538 617 HOH HOH . F 5 HOH B 138 539 619 HOH HOH . F 5 HOH B 139 540 621 HOH HOH . F 5 HOH B 140 541 622 HOH HOH . F 5 HOH B 141 542 623 HOH HOH . F 5 HOH B 142 543 625 HOH HOH . F 5 HOH B 143 544 626 HOH HOH . F 5 HOH B 144 545 627 HOH HOH . F 5 HOH B 145 546 628 HOH HOH . F 5 HOH B 146 547 629 HOH HOH . F 5 HOH B 147 548 630 HOH HOH . F 5 HOH B 148 549 632 HOH HOH . F 5 HOH B 149 550 633 HOH HOH . F 5 HOH B 150 551 634 HOH HOH . F 5 HOH B 151 552 635 HOH HOH . F 5 HOH B 152 553 637 HOH HOH . F 5 HOH B 153 554 638 HOH HOH . F 5 HOH B 154 555 639 HOH HOH . F 5 HOH B 155 556 641 HOH HOH . F 5 HOH B 156 557 642 HOH HOH . F 5 HOH B 157 558 643 HOH HOH . F 5 HOH B 158 559 644 HOH HOH . F 5 HOH B 159 560 645 HOH HOH . F 5 HOH B 160 561 646 HOH HOH . F 5 HOH B 161 562 647 HOH HOH . F 5 HOH B 162 563 648 HOH HOH . F 5 HOH B 163 564 649 HOH HOH . F 5 HOH B 164 565 650 HOH HOH . F 5 HOH B 165 566 651 HOH HOH . F 5 HOH B 166 567 654 HOH HOH . F 5 HOH B 167 568 663 HOH HOH . F 5 HOH B 168 569 673 HOH HOH . F 5 HOH B 169 570 674 HOH HOH . F 5 HOH B 170 571 675 HOH HOH . F 5 HOH B 171 572 676 HOH HOH . F 5 HOH B 172 573 677 HOH HOH . F 5 HOH B 173 574 678 HOH HOH . F 5 HOH B 174 575 679 HOH HOH . F 5 HOH B 175 576 680 HOH HOH . F 5 HOH B 176 577 681 HOH HOH . F 5 HOH B 177 578 682 HOH HOH . F 5 HOH B 178 579 683 HOH HOH . F 5 HOH B 179 580 684 HOH HOH . F 5 HOH B 180 581 685 HOH HOH . F 5 HOH B 181 582 686 HOH HOH . F 5 HOH B 182 583 687 HOH HOH . F 5 HOH B 183 584 688 HOH HOH . F 5 HOH B 184 585 689 HOH HOH . F 5 HOH B 185 586 690 HOH HOH . F 5 HOH B 186 587 691 HOH HOH . F 5 HOH B 187 588 692 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 78.068 _atom_site.Cartn_y 17.271 _atom_site.Cartn_z 20.299 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 400 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #