data_1BKV # _model_server_result.job_id kNUqsQSR86VPXtkYrYFyjg _model_server_result.datetime_utc '2025-02-22 12:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bkv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 1BKV # _exptl.entry_id 1BKV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.46 _cell.angle_gamma 90 _cell.entry_id 1BKV _cell.length_a 117.09 _cell.length_b 15.629 _cell.length_c 39.715 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BKV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HYP 2 A HYP 2 1_555 A N GLY 3 A GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C PRO 4 A PRO 4 1_555 A N HYP 5 A HYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 A C HYP 5 A HYP 5 1_555 A N GLY 6 A GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C PRO 7 A PRO 7 1_555 A N HYP 8 A HYP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C HYP 8 A HYP 8 1_555 A N GLY 9 A GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C PRO 19 A PRO 19 1_555 A N HYP 20 A HYP 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale7 A C HYP 20 A HYP 20 1_555 A N GLY 21 A GLY 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C PRO 22 A PRO 22 1_555 A N HYP 23 A HYP 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale9 A C HYP 23 A HYP 23 1_555 A N GLY 24 A GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C PRO 25 A PRO 25 1_555 A N HYP 26 A HYP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale11 A C HYP 26 A HYP 26 1_555 A N GLY 27 A GLY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C PRO 28 A PRO 28 1_555 A N HYP 29 A HYP 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale13 A C HYP 29 A HYP 29 1_555 A N GLY 30 A GLY 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C PRO 1 B PRO 31 1_555 B N HYP 2 B HYP 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale15 B C HYP 2 B HYP 32 1_555 B N GLY 3 B GLY 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C PRO 4 B PRO 34 1_555 B N HYP 5 B HYP 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale17 B C HYP 5 B HYP 35 1_555 B N GLY 6 B GLY 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B C PRO 7 B PRO 37 1_555 B N HYP 8 B HYP 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale19 B C HYP 8 B HYP 38 1_555 B N GLY 9 B GLY 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 B C PRO 19 B PRO 49 1_555 B N HYP 20 B HYP 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale21 B C HYP 20 B HYP 50 1_555 B N GLY 21 B GLY 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 B C PRO 22 B PRO 52 1_555 B N HYP 23 B HYP 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale23 B C HYP 23 B HYP 53 1_555 B N GLY 24 B GLY 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 B C PRO 25 B PRO 55 1_555 B N HYP 26 B HYP 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale25 B C HYP 26 B HYP 56 1_555 B N GLY 27 B GLY 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 B C PRO 28 B PRO 58 1_555 B N HYP 29 B HYP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale27 B C HYP 29 B HYP 59 1_555 B N GLY 30 B GLY 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale28 C C PRO 1 C PRO 61 1_555 C N HYP 2 C HYP 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale29 C C HYP 2 C HYP 62 1_555 C N GLY 3 C GLY 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale30 C C PRO 4 C PRO 64 1_555 C N HYP 5 C HYP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale31 C C HYP 5 C HYP 65 1_555 C N GLY 6 C GLY 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 C C PRO 7 C PRO 67 1_555 C N HYP 8 C HYP 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale33 C C HYP 8 C HYP 68 1_555 C N GLY 9 C GLY 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale34 C C PRO 19 C PRO 79 1_555 C N HYP 20 C HYP 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale35 C C HYP 20 C HYP 80 1_555 C N GLY 21 C GLY 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale36 C C PRO 22 C PRO 82 1_555 C N HYP 23 C HYP 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale37 C C HYP 23 C HYP 83 1_555 C N GLY 24 C GLY 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale38 C C PRO 25 C PRO 85 1_555 C N HYP 26 C HYP 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale39 C C HYP 26 C HYP 86 1_555 C N GLY 27 C GLY 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale40 C C PRO 28 C PRO 88 1_555 C N HYP 29 C HYP 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale41 C C HYP 29 C HYP 89 1_555 C N GLY 30 C GLY 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 1BKV _atom_sites.fract_transf_matrix[1][1] 0.00854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002202 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.063984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ACY B 1 401 401 ACY ACY . E 2 ACY B 1 403 403 ACY ACY . F 2 ACY B 1 404 404 ACY ACY . G 2 ACY B 1 405 405 ACY ACY . H 2 ACY C 1 402 402 ACY ACY . I 3 HOH A 1 113 113 HOH HOH . I 3 HOH A 2 114 114 HOH HOH . I 3 HOH A 3 123 123 HOH HOH . I 3 HOH A 4 126 126 HOH HOH . I 3 HOH A 5 129 129 HOH HOH . I 3 HOH A 6 134 134 HOH HOH . I 3 HOH A 7 136 136 HOH HOH . I 3 HOH A 8 140 140 HOH HOH . I 3 HOH A 9 142 142 HOH HOH . I 3 HOH A 10 143 143 HOH HOH . I 3 HOH A 11 144 144 HOH HOH . I 3 HOH A 12 147 147 HOH HOH . I 3 HOH A 13 150 150 HOH HOH . I 3 HOH A 14 157 157 HOH HOH . I 3 HOH A 15 160 160 HOH HOH . I 3 HOH A 16 162 162 HOH HOH . I 3 HOH A 17 163 163 HOH HOH . I 3 HOH A 18 164 164 HOH HOH . I 3 HOH A 19 168 168 HOH HOH . I 3 HOH A 20 171 171 HOH HOH . I 3 HOH A 21 175 175 HOH HOH . I 3 HOH A 22 177 177 HOH HOH . I 3 HOH A 23 179 179 HOH HOH . I 3 HOH A 24 182 182 HOH HOH . I 3 HOH A 25 185 185 HOH HOH . I 3 HOH A 26 186 186 HOH HOH . I 3 HOH A 27 189 189 HOH HOH . I 3 HOH A 28 191 191 HOH HOH . I 3 HOH A 29 196 196 HOH HOH . I 3 HOH A 30 206 206 HOH HOH . I 3 HOH A 31 211 211 HOH HOH . J 3 HOH B 1 101 101 HOH HOH . J 3 HOH B 2 104 104 HOH HOH . J 3 HOH B 3 105 105 HOH HOH . J 3 HOH B 4 106 106 HOH HOH . J 3 HOH B 5 108 108 HOH HOH . J 3 HOH B 6 111 111 HOH HOH . J 3 HOH B 7 112 112 HOH HOH . J 3 HOH B 8 116 116 HOH HOH . J 3 HOH B 9 118 118 HOH HOH . J 3 HOH B 10 119 119 HOH HOH . J 3 HOH B 11 122 122 HOH HOH . J 3 HOH B 12 124 124 HOH HOH . J 3 HOH B 13 125 125 HOH HOH . J 3 HOH B 14 127 127 HOH HOH . J 3 HOH B 15 130 130 HOH HOH . J 3 HOH B 16 131 131 HOH HOH . J 3 HOH B 17 135 135 HOH HOH . J 3 HOH B 18 137 137 HOH HOH . J 3 HOH B 19 138 138 HOH HOH . J 3 HOH B 20 139 139 HOH HOH . J 3 HOH B 21 146 146 HOH HOH . J 3 HOH B 22 152 152 HOH HOH . J 3 HOH B 23 155 155 HOH HOH . J 3 HOH B 24 158 158 HOH HOH . J 3 HOH B 25 159 159 HOH HOH . J 3 HOH B 26 169 169 HOH HOH . J 3 HOH B 27 170 170 HOH HOH . J 3 HOH B 28 173 173 HOH HOH . J 3 HOH B 29 181 181 HOH HOH . J 3 HOH B 30 183 183 HOH HOH . J 3 HOH B 31 187 187 HOH HOH . J 3 HOH B 32 188 188 HOH HOH . J 3 HOH B 33 190 190 HOH HOH . J 3 HOH B 34 197 197 HOH HOH . J 3 HOH B 35 198 198 HOH HOH . J 3 HOH B 36 199 199 HOH HOH . J 3 HOH B 37 200 200 HOH HOH . J 3 HOH B 38 203 203 HOH HOH . J 3 HOH B 39 204 204 HOH HOH . J 3 HOH B 40 207 207 HOH HOH . J 3 HOH B 41 209 209 HOH HOH . K 3 HOH C 1 102 102 HOH HOH . K 3 HOH C 2 103 103 HOH HOH . K 3 HOH C 3 107 107 HOH HOH . K 3 HOH C 4 109 109 HOH HOH . K 3 HOH C 5 110 110 HOH HOH . K 3 HOH C 6 115 115 HOH HOH . K 3 HOH C 7 117 117 HOH HOH . K 3 HOH C 8 120 120 HOH HOH . K 3 HOH C 9 121 121 HOH HOH . K 3 HOH C 10 128 128 HOH HOH . K 3 HOH C 11 132 132 HOH HOH . K 3 HOH C 12 133 133 HOH HOH . K 3 HOH C 13 141 141 HOH HOH . K 3 HOH C 14 145 145 HOH HOH . K 3 HOH C 15 148 148 HOH HOH . K 3 HOH C 16 149 149 HOH HOH . K 3 HOH C 17 151 151 HOH HOH . K 3 HOH C 18 153 153 HOH HOH . K 3 HOH C 19 154 154 HOH HOH . K 3 HOH C 20 156 156 HOH HOH . K 3 HOH C 21 161 161 HOH HOH . K 3 HOH C 22 165 165 HOH HOH . K 3 HOH C 23 166 166 HOH HOH . K 3 HOH C 24 167 167 HOH HOH . K 3 HOH C 25 172 172 HOH HOH . K 3 HOH C 26 174 174 HOH HOH . K 3 HOH C 27 176 176 HOH HOH . K 3 HOH C 28 178 178 HOH HOH . K 3 HOH C 29 180 180 HOH HOH . K 3 HOH C 30 184 184 HOH HOH . K 3 HOH C 31 192 192 HOH HOH . K 3 HOH C 32 193 193 HOH HOH . K 3 HOH C 33 194 194 HOH HOH . K 3 HOH C 34 195 195 HOH HOH . K 3 HOH C 35 201 201 HOH HOH . K 3 HOH C 36 202 202 HOH HOH . K 3 HOH C 37 205 205 HOH HOH . K 3 HOH C 38 208 208 HOH HOH . K 3 HOH C 39 210 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . F 2 64.229 -15.952 -1.803 1 50.07 ? C ACY 404 B 1 HETATM 2 O O ACY . . . F 2 63.899 -15.009 -2.532 1 49.31 ? O ACY 404 B 1 HETATM 3 O OXT ACY . . . F 2 63.363 -16.81 -1.33 1 49.88 ? OXT ACY 404 B 1 HETATM 4 C CH3 ACY . . . F 2 65.63 -16.251 -1.362 1 49.01 ? CH3 ACY 404 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #