data_1BL5
#
_model_server_result.job_id            wXoMIwNMAr3S48mFCKaQpQ 
_model_server_result.datetime_utc      '2024-11-22 08:55:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    1BL5 
#
_exptl.entry_id    1BL5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BL5 
_cell.length_a            106.1 
_cell.length_b            106.1 
_cell.length_c            151.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O2 AKG . A AKG 1 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc2 C O5 AKG . A AKG 1 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc3 A OD2 ASP 281 A ASP 283 7_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc4 A OD1 ASP 305 A ASP 307 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     1BL5 
_atom_sites.fract_transf_matrix[1][1]    0.009425 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 418 418 MG MG . 
C 3 AKG A 1 1 1 AKG AKG . 
D 4 NAP A 1 2 2 NAP NAP . 
E 5 HOH A 1 420 420 HOH HOH . 
E 5 HOH A 2 421 421 HOH HOH . 
E 5 HOH A 3 425 425 HOH HOH . 
E 5 HOH A 4 426 426 HOH HOH . 
E 5 HOH A 5 427 427 HOH HOH . 
E 5 HOH A 6 428 428 HOH HOH . 
E 5 HOH A 7 429 429 HOH HOH . 
E 5 HOH A 8 430 430 HOH HOH . 
E 5 HOH A 9 431 431 HOH HOH . 
E 5 HOH A 10 432 432 HOH HOH . 
E 5 HOH A 11 434 434 HOH HOH . 
E 5 HOH A 12 436 436 HOH HOH . 
E 5 HOH A 13 437 437 HOH HOH . 
E 5 HOH A 14 438 438 HOH HOH . 
E 5 HOH A 15 440 440 HOH HOH . 
E 5 HOH A 16 442 442 HOH HOH . 
E 5 HOH A 17 443 443 HOH HOH . 
E 5 HOH A 18 444 444 HOH HOH . 
E 5 HOH A 19 445 445 HOH HOH . 
E 5 HOH A 20 446 446 HOH HOH . 
E 5 HOH A 21 447 447 HOH HOH . 
E 5 HOH A 22 448 448 HOH HOH . 
E 5 HOH A 23 449 449 HOH HOH . 
E 5 HOH A 24 450 450 HOH HOH . 
E 5 HOH A 25 451 451 HOH HOH . 
E 5 HOH A 26 452 452 HOH HOH . 
E 5 HOH A 27 457 457 HOH HOH . 
E 5 HOH A 28 459 459 HOH HOH . 
E 5 HOH A 29 460 460 HOH HOH . 
E 5 HOH A 30 463 463 HOH HOH . 
E 5 HOH A 31 464 464 HOH HOH . 
E 5 HOH A 32 465 465 HOH HOH . 
E 5 HOH A 33 466 466 HOH HOH . 
E 5 HOH A 34 467 467 HOH HOH . 
E 5 HOH A 35 468 468 HOH HOH . 
E 5 HOH A 36 469 469 HOH HOH . 
E 5 HOH A 37 470 470 HOH HOH . 
E 5 HOH A 38 471 471 HOH HOH . 
E 5 HOH A 39 472 472 HOH HOH . 
E 5 HOH A 40 474 474 HOH HOH . 
E 5 HOH A 41 477 477 HOH HOH . 
E 5 HOH A 42 479 479 HOH HOH . 
E 5 HOH A 43 480 480 HOH HOH . 
E 5 HOH A 44 481 481 HOH HOH . 
E 5 HOH A 45 482 482 HOH HOH . 
E 5 HOH A 46 483 483 HOH HOH . 
E 5 HOH A 47 484 484 HOH HOH . 
E 5 HOH A 48 485 485 HOH HOH . 
E 5 HOH A 49 487 487 HOH HOH . 
E 5 HOH A 50 488 488 HOH HOH . 
E 5 HOH A 51 490 490 HOH HOH . 
E 5 HOH A 52 491 491 HOH HOH . 
E 5 HOH A 53 493 493 HOH HOH . 
E 5 HOH A 54 495 495 HOH HOH . 
E 5 HOH A 55 497 497 HOH HOH . 
E 5 HOH A 56 498 498 HOH HOH . 
E 5 HOH A 57 499 499 HOH HOH . 
E 5 HOH A 58 500 500 HOH HOH . 
E 5 HOH A 59 501 501 HOH HOH . 
E 5 HOH A 60 506 506 HOH HOH . 
E 5 HOH A 61 507 507 HOH HOH . 
E 5 HOH A 62 510 510 HOH HOH . 
E 5 HOH A 63 517 517 HOH HOH . 
E 5 HOH A 64 526 526 HOH HOH . 
E 5 HOH A 65 528 528 HOH HOH . 
E 5 HOH A 66 530 530 HOH HOH . 
E 5 HOH A 67 531 531 HOH HOH . 
E 5 HOH A 68 532 532 HOH HOH . 
E 5 HOH A 69 533 533 HOH HOH . 
E 5 HOH A 70 534 534 HOH HOH . 
E 5 HOH A 71 535 535 HOH HOH . 
E 5 HOH A 72 537 537 HOH HOH . 
E 5 HOH A 73 538 538 HOH HOH . 
E 5 HOH A 74 539 539 HOH HOH . 
E 5 HOH A 75 540 540 HOH HOH . 
E 5 HOH A 76 541 541 HOH HOH . 
E 5 HOH A 77 543 543 HOH HOH . 
E 5 HOH A 78 544 544 HOH HOH . 
E 5 HOH A 79 545 545 HOH HOH . 
E 5 HOH A 80 546 546 HOH HOH . 
E 5 HOH A 81 547 547 HOH HOH . 
E 5 HOH A 82 548 548 HOH HOH . 
E 5 HOH A 83 549 549 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . C 3 85.026 67.033 3.335 1 13.04 ? C1 AKG 1 A 1 
HETATM 2 O O1 AKG . . . C 3 85.153 66.298 4.28 1 12.97 ? O1 AKG 1 A 1 
HETATM 3 O O2 AKG . . . C 3 85.093 68.317 3.633 1 14.73 ? O2 AKG 1 A 1 
HETATM 4 C C2 AKG . . . C 3 84.692 66.838 1.946 1 11.6 ? C2 AKG 1 A 1 
HETATM 5 O O5 AKG . . . C 3 84.621 67.994 1.192 1 12.55 ? O5 AKG 1 A 1 
HETATM 6 C C3 AKG . . . C 3 84.62 65.511 1.761 1 11.76 ? C3 AKG 1 A 1 
HETATM 7 C C4 AKG . . . C 3 84.484 64.875 0.494 1 11.85 ? C4 AKG 1 A 1 
HETATM 8 C C5 AKG . . . C 3 85.649 63.914 0.374 1 11.7 ? C5 AKG 1 A 1 
HETATM 9 O O3 AKG . . . C 3 86.73 64.219 -0.045 1 13.75 ? O3 AKG 1 A 1 
HETATM 10 O O4 AKG . . . C 3 85.486 62.795 0.831 1 12.5 ? O4 AKG 1 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#