data_1BL5
#
_model_server_result.job_id            '_UQ42_6FIW0kO3QnhvQDOw' 
_model_server_result.datetime_utc      '2024-11-05 00:36:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    1BL5 
#
_exptl.entry_id    1BL5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BL5 
_cell.length_a            106.1 
_cell.length_b            106.1 
_cell.length_c            151.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O2 AKG . A AKG 1 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc2 C O5 AKG . A AKG 1 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc3 A OD2 ASP 281 A ASP 283 7_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc4 A OD1 ASP 305 A ASP 307 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 252 n n 
PA O2A NAP sing 253 n n 
PA O5B NAP sing 254 n n 
PA O3 NAP sing 255 n n 
O2A HOA2 NAP sing 256 n n 
O5B C5B NAP sing 257 n n 
C5B C4B NAP sing 258 n n 
C5B H51A NAP sing 259 n n 
C5B H52A NAP sing 260 n n 
C4B O4B NAP sing 261 n n 
C4B C3B NAP sing 262 n n 
C4B H4B NAP sing 263 n n 
O4B C1B NAP sing 264 n n 
C3B O3B NAP sing 265 n n 
C3B C2B NAP sing 266 n n 
C3B H3B NAP sing 267 n n 
O3B HO3A NAP sing 268 n n 
C2B O2B NAP sing 269 n n 
C2B C1B NAP sing 270 n n 
C2B H2B NAP sing 271 n n 
O2B P2B NAP sing 272 n n 
C1B N9A NAP sing 273 n n 
C1B H1B NAP sing 274 n n 
N9A C8A NAP sing 275 n y 
N9A C4A NAP sing 276 n y 
C8A N7A NAP doub 277 n y 
C8A H8A NAP sing 278 n n 
N7A C5A NAP sing 279 n y 
C5A C6A NAP sing 280 n y 
C5A C4A NAP doub 281 n y 
C6A N6A NAP sing 282 n n 
C6A N1A NAP doub 283 n y 
N6A H61A NAP sing 284 n n 
N6A H62A NAP sing 285 n n 
N1A C2A NAP sing 286 n y 
C2A N3A NAP doub 287 n y 
C2A H2A NAP sing 288 n n 
N3A C4A NAP sing 289 n y 
O3 PN NAP sing 290 n n 
PN O1N NAP doub 291 n n 
PN O2N NAP sing 292 n n 
PN O5D NAP sing 293 n n 
O5D C5D NAP sing 294 n n 
C5D C4D NAP sing 295 n n 
C5D H51N NAP sing 296 n n 
C5D H52N NAP sing 297 n n 
C4D O4D NAP sing 298 n n 
C4D C3D NAP sing 299 n n 
C4D H4D NAP sing 300 n n 
O4D C1D NAP sing 301 n n 
C3D O3D NAP sing 302 n n 
C3D C2D NAP sing 303 n n 
C3D H3D NAP sing 304 n n 
O3D HO3N NAP sing 305 n n 
C2D O2D NAP sing 306 n n 
C2D C1D NAP sing 307 n n 
C2D H2D NAP sing 308 n n 
O2D HO2N NAP sing 309 n n 
C1D N1N NAP sing 310 n n 
C1D H1D NAP sing 311 n n 
N1N C2N NAP sing 312 n y 
N1N C6N NAP doub 313 n y 
C2N C3N NAP doub 314 n y 
C2N H2N NAP sing 315 n n 
C3N C7N NAP sing 316 n n 
C3N C4N NAP sing 317 n y 
C7N O7N NAP doub 318 n n 
C7N N7N NAP sing 319 n n 
N7N H71N NAP sing 320 n n 
N7N H72N NAP sing 321 n n 
C4N C5N NAP doub 322 n y 
C4N H4N NAP sing 323 n n 
C5N C6N NAP sing 324 n y 
C5N H5N NAP sing 325 n n 
C6N H6N NAP sing 326 n n 
P2B O1X NAP doub 327 n n 
P2B O2X NAP sing 328 n n 
P2B O3X NAP sing 329 n n 
O2X HOP2 NAP sing 330 n n 
O3X HOP3 NAP sing 331 n n 
#
_atom_sites.entry_id                     1BL5 
_atom_sites.fract_transf_matrix[1][1]    0.009425 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 418 418 MG MG . 
C 3 AKG A 1 1 1 AKG AKG . 
D 4 NAP A 1 2 2 NAP NAP . 
E 5 HOH A 1 420 420 HOH HOH . 
E 5 HOH A 2 421 421 HOH HOH . 
E 5 HOH A 3 425 425 HOH HOH . 
E 5 HOH A 4 426 426 HOH HOH . 
E 5 HOH A 5 427 427 HOH HOH . 
E 5 HOH A 6 428 428 HOH HOH . 
E 5 HOH A 7 429 429 HOH HOH . 
E 5 HOH A 8 430 430 HOH HOH . 
E 5 HOH A 9 431 431 HOH HOH . 
E 5 HOH A 10 432 432 HOH HOH . 
E 5 HOH A 11 434 434 HOH HOH . 
E 5 HOH A 12 436 436 HOH HOH . 
E 5 HOH A 13 437 437 HOH HOH . 
E 5 HOH A 14 438 438 HOH HOH . 
E 5 HOH A 15 440 440 HOH HOH . 
E 5 HOH A 16 442 442 HOH HOH . 
E 5 HOH A 17 443 443 HOH HOH . 
E 5 HOH A 18 444 444 HOH HOH . 
E 5 HOH A 19 445 445 HOH HOH . 
E 5 HOH A 20 446 446 HOH HOH . 
E 5 HOH A 21 447 447 HOH HOH . 
E 5 HOH A 22 448 448 HOH HOH . 
E 5 HOH A 23 449 449 HOH HOH . 
E 5 HOH A 24 450 450 HOH HOH . 
E 5 HOH A 25 451 451 HOH HOH . 
E 5 HOH A 26 452 452 HOH HOH . 
E 5 HOH A 27 457 457 HOH HOH . 
E 5 HOH A 28 459 459 HOH HOH . 
E 5 HOH A 29 460 460 HOH HOH . 
E 5 HOH A 30 463 463 HOH HOH . 
E 5 HOH A 31 464 464 HOH HOH . 
E 5 HOH A 32 465 465 HOH HOH . 
E 5 HOH A 33 466 466 HOH HOH . 
E 5 HOH A 34 467 467 HOH HOH . 
E 5 HOH A 35 468 468 HOH HOH . 
E 5 HOH A 36 469 469 HOH HOH . 
E 5 HOH A 37 470 470 HOH HOH . 
E 5 HOH A 38 471 471 HOH HOH . 
E 5 HOH A 39 472 472 HOH HOH . 
E 5 HOH A 40 474 474 HOH HOH . 
E 5 HOH A 41 477 477 HOH HOH . 
E 5 HOH A 42 479 479 HOH HOH . 
E 5 HOH A 43 480 480 HOH HOH . 
E 5 HOH A 44 481 481 HOH HOH . 
E 5 HOH A 45 482 482 HOH HOH . 
E 5 HOH A 46 483 483 HOH HOH . 
E 5 HOH A 47 484 484 HOH HOH . 
E 5 HOH A 48 485 485 HOH HOH . 
E 5 HOH A 49 487 487 HOH HOH . 
E 5 HOH A 50 488 488 HOH HOH . 
E 5 HOH A 51 490 490 HOH HOH . 
E 5 HOH A 52 491 491 HOH HOH . 
E 5 HOH A 53 493 493 HOH HOH . 
E 5 HOH A 54 495 495 HOH HOH . 
E 5 HOH A 55 497 497 HOH HOH . 
E 5 HOH A 56 498 498 HOH HOH . 
E 5 HOH A 57 499 499 HOH HOH . 
E 5 HOH A 58 500 500 HOH HOH . 
E 5 HOH A 59 501 501 HOH HOH . 
E 5 HOH A 60 506 506 HOH HOH . 
E 5 HOH A 61 507 507 HOH HOH . 
E 5 HOH A 62 510 510 HOH HOH . 
E 5 HOH A 63 517 517 HOH HOH . 
E 5 HOH A 64 526 526 HOH HOH . 
E 5 HOH A 65 528 528 HOH HOH . 
E 5 HOH A 66 530 530 HOH HOH . 
E 5 HOH A 67 531 531 HOH HOH . 
E 5 HOH A 68 532 532 HOH HOH . 
E 5 HOH A 69 533 533 HOH HOH . 
E 5 HOH A 70 534 534 HOH HOH . 
E 5 HOH A 71 535 535 HOH HOH . 
E 5 HOH A 72 537 537 HOH HOH . 
E 5 HOH A 73 538 538 HOH HOH . 
E 5 HOH A 74 539 539 HOH HOH . 
E 5 HOH A 75 540 540 HOH HOH . 
E 5 HOH A 76 541 541 HOH HOH . 
E 5 HOH A 77 543 543 HOH HOH . 
E 5 HOH A 78 544 544 HOH HOH . 
E 5 HOH A 79 545 545 HOH HOH . 
E 5 HOH A 80 546 546 HOH HOH . 
E 5 HOH A 81 547 547 HOH HOH . 
E 5 HOH A 82 548 548 HOH HOH . 
E 5 HOH A 83 549 549 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 4 92.096 68.07 -4.797 1 67.45 ? PA NAP 2 A 1 
HETATM 2 O O1A NAP . . . D 4 90.834 67.668 -4.054 1 62.84 ? O1A NAP 2 A 1 
HETATM 3 O O2A NAP . . . D 4 91.972 68.407 -6.26 1 66.28 ? O2A NAP 2 A 1 
HETATM 4 O O5B NAP . . . D 4 92.79 69.435 -4.066 1 60.09 ? O5B NAP 2 A 1 
HETATM 5 C C5B NAP . . . D 4 92.815 70.655 -4.89 1 53.65 ? C5B NAP 2 A 1 
HETATM 6 C C4B NAP . . . D 4 94.095 71.545 -4.987 1 47.72 ? C4B NAP 2 A 1 
HETATM 7 O O4B NAP . . . D 4 94.471 72.318 -3.805 1 45.24 ? O4B NAP 2 A 1 
HETATM 8 C C3B NAP . . . D 4 95.385 70.806 -5.337 1 46.23 ? C3B NAP 2 A 1 
HETATM 9 O O3B NAP . . . D 4 95.432 70.426 -6.706 1 46.93 ? O3B NAP 2 A 1 
HETATM 10 C C2B NAP . . . D 4 96.474 71.804 -4.975 1 45.72 ? C2B NAP 2 A 1 
HETATM 11 O O2B NAP . . . D 4 96.329 73.068 -5.623 1 49.88 ? O2B NAP 2 A 1 
HETATM 12 C C1B NAP . . . D 4 95.903 72.198 -3.641 1 44.85 ? C1B NAP 2 A 1 
HETATM 13 N N9A NAP . . . D 4 96.278 71.295 -2.509 1 43.33 ? N9A NAP 2 A 1 
HETATM 14 C C8A NAP . . . D 4 95.645 70.138 -2.02 1 40.28 ? C8A NAP 2 A 1 
HETATM 15 N N7A NAP . . . D 4 96.174 69.712 -0.9 1 40.18 ? N7A NAP 2 A 1 
HETATM 16 C C5A NAP . . . D 4 97.201 70.619 -0.624 1 39.02 ? C5A NAP 2 A 1 
HETATM 17 C C6A NAP . . . D 4 98.131 70.711 0.415 1 34.19 ? C6A NAP 2 A 1 
HETATM 18 N N6A NAP . . . D 4 98.182 69.863 1.407 1 28.52 ? N6A NAP 2 A 1 
HETATM 19 N N1A NAP . . . D 4 99.035 71.689 0.349 1 38.3 ? N1A NAP 2 A 1 
HETATM 20 C C2A NAP . . . D 4 99.027 72.56 -0.668 1 39.87 ? C2A NAP 2 A 1 
HETATM 21 N N3A NAP . . . D 4 98.187 72.591 -1.71 1 40.58 ? N3A NAP 2 A 1 
HETATM 22 C C4A NAP . . . D 4 97.28 71.582 -1.612 1 41.14 ? C4A NAP 2 A 1 
HETATM 23 O O3 NAP . . . D 4 93.292 66.923 -4.689 1 60.87 ? O3 NAP 2 A 1 
HETATM 24 P P2B NAP . . . D 4 97.347 73.673 -6.762 1 55.02 ? P2B NAP 2 A 1 
HETATM 25 O O1X NAP . . . D 4 97.497 72.572 -7.762 1 52.81 ? O1X NAP 2 A 1 
HETATM 26 O O2X NAP . . . D 4 96.84 75.017 -7.166 1 52.15 ? O2X NAP 2 A 1 
HETATM 27 O O3X NAP . . . D 4 98.801 73.974 -6.103 1 51.6 ? O3X NAP 2 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#