data_1BL9 # _model_server_result.job_id mSPPcpAxyk5zyXP-Qlbh4g _model_server_result.datetime_utc '2024-11-26 08:58:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 1BL9 # _exptl.entry_id 1BL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BL9 _cell.length_a 166.61 _cell.length_b 89 _cell.length_c 112.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 47 A CYS 47 1_555 C CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale2 A SG CYS 50 A CYS 50 1_555 C CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale3 B SG CYS 47 B CYS 47 1_555 F CAB HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? covale ? covale4 B SG CYS 50 B CYS 50 1_555 F CAC HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc1 A NE2 HIS 51 A HIS 51 1_555 C FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc2 A SD MET 88 A MET 88 1_555 C FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc3 A NE2 HIS 182 A HIS 182 1_555 D FE DHE . A DHE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 B NE2 HIS 51 B HIS 51 1_555 F FE HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc5 B SD MET 88 B MET 88 1_555 F FE HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 B NE2 HIS 182 B HIS 182 1_555 G FE DHE . B DHE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc7 G FE DHE . B DHE 602 1_555 E O OH . B OH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 217 n n FE NB HEC sing 218 n n FE NC HEC sing 219 n n FE ND HEC sing 220 n n CHA C1A HEC doub 221 n n CHA C4D HEC sing 222 n n CHA HHA HEC sing 223 n n CHB C4A HEC doub 224 n n CHB C1B HEC sing 225 n n CHB HHB HEC sing 226 n n CHC C4B HEC doub 227 n n CHC C1C HEC sing 228 n n CHC HHC HEC sing 229 n n CHD C4C HEC doub 230 n n CHD C1D HEC sing 231 n n CHD HHD HEC sing 232 n n NA C1A HEC sing 233 n y NA C4A HEC sing 234 n y C1A C2A HEC sing 235 n y C2A C3A HEC doub 236 n y C2A CAA HEC sing 237 n n C3A C4A HEC sing 238 n y C3A CMA HEC sing 239 n n CMA HMA1 HEC sing 240 n n CMA HMA2 HEC sing 241 n n CMA HMA3 HEC sing 242 n n CAA CBA HEC sing 243 n n CAA HAA1 HEC sing 244 n n CAA HAA2 HEC sing 245 n n CBA CGA HEC sing 246 n n CBA HBA1 HEC sing 247 n n CBA HBA2 HEC sing 248 n n CGA O1A HEC doub 249 n n CGA O2A HEC sing 250 n n O2A H2A HEC sing 251 n n NB C1B HEC sing 252 n y NB C4B HEC sing 253 n y C1B C2B HEC doub 254 n y C2B C3B HEC sing 255 n y C2B CMB HEC sing 256 n n C3B C4B HEC sing 257 n y C3B CAB HEC doub 258 e n CMB HMB1 HEC sing 259 n n CMB HMB2 HEC sing 260 n n CMB HMB3 HEC sing 261 n n CAB CBB HEC sing 262 n n CAB HAB HEC sing 263 n n CBB HBB1 HEC sing 264 n n CBB HBB2 HEC sing 265 n n CBB HBB3 HEC sing 266 n n NC C1C HEC sing 267 n y NC C4C HEC sing 268 n y C1C C2C HEC doub 269 n y C2C C3C HEC sing 270 n y C2C CMC HEC sing 271 n n C3C C4C HEC sing 272 n y C3C CAC HEC doub 273 e n CMC HMC1 HEC sing 274 n n CMC HMC2 HEC sing 275 n n CMC HMC3 HEC sing 276 n n CAC CBC HEC sing 277 n n CAC HAC HEC sing 278 n n CBC HBC1 HEC sing 279 n n CBC HBC2 HEC sing 280 n n CBC HBC3 HEC sing 281 n n ND C1D HEC sing 282 n y ND C4D HEC sing 283 n y C1D C2D HEC doub 284 n y C2D C3D HEC sing 285 n y C2D CMD HEC sing 286 n n C3D C4D HEC doub 287 n y C3D CAD HEC sing 288 n n CMD HMD1 HEC sing 289 n n CMD HMD2 HEC sing 290 n n CMD HMD3 HEC sing 291 n n CAD CBD HEC sing 292 n n CAD HAD1 HEC sing 293 n n CAD HAD2 HEC sing 294 n n CBD CGD HEC sing 295 n n CBD HBD1 HEC sing 296 n n CBD HBD2 HEC sing 297 n n CGD O1D HEC doub 298 n n CGD O2D HEC sing 299 n n O2D H2D HEC sing 300 n n # _atom_sites.entry_id 1BL9 _atom_sites.fract_transf_matrix[1][1] 0.006002 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 601 601 HEC HEC . D 3 DHE A 1 602 602 DHE DHE . E 4 OH B 1 603 603 OH OH . F 2 HEC B 1 601 601 HEC HEC . G 3 DHE B 1 602 602 DHE DHE . H 5 HOH A 1 603 5 HOH HOH . H 5 HOH A 2 604 7 HOH HOH . H 5 HOH A 3 605 8 HOH HOH . H 5 HOH A 4 606 9 HOH HOH . H 5 HOH A 5 607 10 HOH HOH . H 5 HOH A 6 608 11 HOH HOH . H 5 HOH A 7 609 12 HOH HOH . H 5 HOH A 8 610 14 HOH HOH . H 5 HOH A 9 611 15 HOH HOH . H 5 HOH A 10 612 16 HOH HOH . H 5 HOH A 11 613 17 HOH HOH . H 5 HOH A 12 614 18 HOH HOH . H 5 HOH A 13 615 20 HOH HOH . H 5 HOH A 14 616 21 HOH HOH . H 5 HOH A 15 617 22 HOH HOH . H 5 HOH A 16 618 23 HOH HOH . H 5 HOH A 17 619 24 HOH HOH . H 5 HOH A 18 620 25 HOH HOH . H 5 HOH A 19 621 26 HOH HOH . H 5 HOH A 20 622 27 HOH HOH . H 5 HOH A 21 623 28 HOH HOH . H 5 HOH A 22 624 29 HOH HOH . H 5 HOH A 23 625 30 HOH HOH . H 5 HOH A 24 626 31 HOH HOH . H 5 HOH A 25 627 32 HOH HOH . H 5 HOH A 26 628 33 HOH HOH . H 5 HOH A 27 629 49 HOH HOH . H 5 HOH A 28 630 61 HOH HOH . H 5 HOH A 29 631 63 HOH HOH . H 5 HOH A 30 632 64 HOH HOH . H 5 HOH A 31 633 67 HOH HOH . H 5 HOH A 32 634 69 HOH HOH . H 5 HOH A 33 635 70 HOH HOH . H 5 HOH A 34 636 71 HOH HOH . H 5 HOH A 35 637 72 HOH HOH . H 5 HOH A 36 638 73 HOH HOH . I 5 HOH B 1 604 1 HOH HOH . I 5 HOH B 2 605 2 HOH HOH . I 5 HOH B 3 606 3 HOH HOH . I 5 HOH B 4 607 4 HOH HOH . I 5 HOH B 5 608 6 HOH HOH . I 5 HOH B 6 609 13 HOH HOH . I 5 HOH B 7 610 19 HOH HOH . I 5 HOH B 8 611 34 HOH HOH . I 5 HOH B 9 612 35 HOH HOH . I 5 HOH B 10 613 36 HOH HOH . I 5 HOH B 11 614 37 HOH HOH . I 5 HOH B 12 615 38 HOH HOH . I 5 HOH B 13 616 39 HOH HOH . I 5 HOH B 14 617 40 HOH HOH . I 5 HOH B 15 618 41 HOH HOH . I 5 HOH B 16 619 42 HOH HOH . I 5 HOH B 17 620 43 HOH HOH . I 5 HOH B 18 621 44 HOH HOH . I 5 HOH B 19 622 45 HOH HOH . I 5 HOH B 20 623 46 HOH HOH . I 5 HOH B 21 624 47 HOH HOH . I 5 HOH B 22 625 48 HOH HOH . I 5 HOH B 23 626 50 HOH HOH . I 5 HOH B 24 627 51 HOH HOH . I 5 HOH B 25 628 52 HOH HOH . I 5 HOH B 26 629 53 HOH HOH . I 5 HOH B 27 630 54 HOH HOH . I 5 HOH B 28 631 55 HOH HOH . I 5 HOH B 29 632 56 HOH HOH . I 5 HOH B 30 633 57 HOH HOH . I 5 HOH B 31 634 58 HOH HOH . I 5 HOH B 32 635 59 HOH HOH . I 5 HOH B 33 636 60 HOH HOH . I 5 HOH B 34 637 62 HOH HOH . I 5 HOH B 35 638 65 HOH HOH . I 5 HOH B 36 639 66 HOH HOH . I 5 HOH B 37 640 68 HOH HOH . I 5 HOH B 38 641 74 HOH HOH . I 5 HOH B 39 642 75 HOH HOH . I 5 HOH B 40 643 76 HOH HOH . I 5 HOH B 41 644 77 HOH HOH . I 5 HOH B 42 645 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . F 2 43.564 11.831 49.339 1 36.59 ? FE HEC 601 B 1 HETATM 2 C CHA HEC . . . F 2 43.356 15.185 49.242 1 34.75 ? CHA HEC 601 B 1 HETATM 3 C CHB HEC . . . F 2 46.521 11.946 47.739 1 30.85 ? CHB HEC 601 B 1 HETATM 4 C CHC HEC . . . F 2 43.947 8.454 49.653 1 34.2 ? CHC HEC 601 B 1 HETATM 5 C CHD HEC . . . F 2 40.493 11.581 50.626 1 30.67 ? CHD HEC 601 B 1 HETATM 6 N NA HEC . . . F 2 44.707 13.259 48.663 1 30.62 ? NA HEC 601 B 1 HETATM 7 C C1A HEC . . . F 2 44.494 14.622 48.693 1 32.37 ? C1A HEC 601 B 1 HETATM 8 C C2A HEC . . . F 2 45.605 15.322 48.029 1 35.13 ? C2A HEC 601 B 1 HETATM 9 C C3A HEC . . . F 2 46.462 14.394 47.633 1 33.23 ? C3A HEC 601 B 1 HETATM 10 C C4A HEC . . . F 2 45.91 13.129 48.009 1 29.53 ? C4A HEC 601 B 1 HETATM 11 C CMA HEC . . . F 2 47.816 14.671 46.986 1 36.42 ? CMA HEC 601 B 1 HETATM 12 C CAA HEC . . . F 2 45.913 16.804 47.87 1 29.55 ? CAA HEC 601 B 1 HETATM 13 C CBA HEC . . . F 2 45.037 17.524 46.872 1 32.1 ? CBA HEC 601 B 1 HETATM 14 C CGA HEC . . . F 2 45.34 19.001 46.805 1 37.35 ? CGA HEC 601 B 1 HETATM 15 O O1A HEC . . . F 2 45.133 19.696 47.823 1 47.72 ? O1A HEC 601 B 1 HETATM 16 O O2A HEC . . . F 2 45.78 19.472 45.733 1 38.73 ? O2A HEC 601 B 1 HETATM 17 N NB HEC . . . F 2 44.918 10.501 48.793 1 32.53 ? NB HEC 601 B 1 HETATM 18 C C1B HEC . . . F 2 46.071 10.712 48.1 1 30.04 ? C1B HEC 601 B 1 HETATM 19 C C2B HEC . . . F 2 46.841 9.51 47.928 1 29.48 ? C2B HEC 601 B 1 HETATM 20 C C3B HEC . . . F 2 46.161 8.537 48.554 1 32.96 ? C3B HEC 601 B 1 HETATM 21 C C4B HEC . . . F 2 44.965 9.15 49.066 1 34.15 ? C4B HEC 601 B 1 HETATM 22 C CMB HEC . . . F 2 48.108 9.363 47.081 1 26.5 ? CMB HEC 601 B 1 HETATM 23 C CAB HEC . . . F 2 46.431 7.046 48.514 1 34.17 ? CAB HEC 601 B 1 HETATM 24 C CBB HEC . . . F 2 47.823 6.492 48.798 1 37.9 ? CBB HEC 601 B 1 HETATM 25 N NC HEC . . . F 2 42.474 10.349 50 1 36.24 ? NC HEC 601 B 1 HETATM 26 C C1C HEC . . . F 2 42.767 9.001 50.035 1 35.68 ? C1C HEC 601 B 1 HETATM 27 C C2C HEC . . . F 2 41.694 8.221 50.584 1 37.91 ? C2C HEC 601 B 1 HETATM 28 C C3C HEC . . . F 2 40.747 9.125 50.94 1 37.67 ? C3C HEC 601 B 1 HETATM 29 C C4C HEC . . . F 2 41.223 10.425 50.542 1 35.29 ? C4C HEC 601 B 1 HETATM 30 C CMC HEC . . . F 2 41.633 6.694 50.641 1 36.13 ? CMC HEC 601 B 1 HETATM 31 C CAC HEC . . . F 2 39.347 8.827 51.379 1 41.98 ? CAC HEC 601 B 1 HETATM 32 C CBC HEC . . . F 2 39.08 7.699 52.364 1 46.07 ? CBC HEC 601 B 1 HETATM 33 N ND HEC . . . F 2 42.211 13.1 49.824 1 32.76 ? ND HEC 601 B 1 HETATM 34 C C1D HEC . . . F 2 40.947 12.835 50.308 1 30.87 ? C1D HEC 601 B 1 HETATM 35 C C2D HEC . . . F 2 40.24 14.054 50.609 1 32.19 ? C2D HEC 601 B 1 HETATM 36 C C3D HEC . . . F 2 41.063 15.061 50.299 1 34.88 ? C3D HEC 601 B 1 HETATM 37 C C4D HEC . . . F 2 42.284 14.48 49.775 1 36.68 ? C4D HEC 601 B 1 HETATM 38 C CMD HEC . . . F 2 38.862 14.212 51.225 1 34.33 ? CMD HEC 601 B 1 HETATM 39 C CAD HEC . . . F 2 40.775 16.514 50.571 1 36.14 ? CAD HEC 601 B 1 HETATM 40 C CBD HEC . . . F 2 41.605 16.989 51.743 1 39.52 ? CBD HEC 601 B 1 HETATM 41 C CGD HEC . . . F 2 41.456 18.478 52.014 1 45.63 ? CGD HEC 601 B 1 HETATM 42 O O1D HEC . . . F 2 41.35 18.858 53.195 1 40.33 ? O1D HEC 601 B 1 HETATM 43 O O2D HEC . . . F 2 41.457 19.26 51.049 1 47.01 ? O2D HEC 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #