data_1BL9 # _model_server_result.job_id UCpRTrAeCNKiyJDl9KFyOw _model_server_result.datetime_utc '2024-10-12 13:18:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 1BL9 # _exptl.entry_id 1BL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 712.484 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME D' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BL9 _cell.length_a 166.61 _cell.length_b 89 _cell.length_c 112.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C FE HEC . A HEC 601 1_555 A NE2 HIS 51 A HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc2 C FE HEC . A HEC 601 1_555 A SD MET 88 A MET 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? covale ? covale1 C CAB HEC . A HEC 601 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale2 C CAC HEC . A HEC 601 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc3 D FE DHE . A DHE 602 1_555 A NE2 HIS 182 A HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 F FE HEC . B HEC 601 1_555 B NE2 HIS 51 B HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc5 F FE HEC . B HEC 601 1_555 B SD MET 88 B MET 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? covale ? covale3 F CAB HEC . B HEC 601 1_555 B SG CYS 47 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? covale ? covale4 F CAC HEC . B HEC 601 1_555 B SG CYS 50 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc6 G FE DHE . B DHE 602 1_555 B NE2 HIS 182 B HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc7 G FE DHE . B DHE 602 1_555 E O OH . B OH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C34 H32 Fe N4 O10' _chem_comp.formula_weight 712.484 _chem_comp.id DHE _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME D' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BL9 _atom_sites.fract_transf_matrix[1][1] 0.006002 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 601 601 HEC HEC . D 3 DHE A 1 602 602 DHE DHE . E 4 OH B 1 603 603 OH OH . F 2 HEC B 1 601 601 HEC HEC . G 3 DHE B 1 602 602 DHE DHE . H 5 HOH A 1 603 5 HOH HOH . H 5 HOH A 2 604 7 HOH HOH . H 5 HOH A 3 605 8 HOH HOH . H 5 HOH A 4 606 9 HOH HOH . H 5 HOH A 5 607 10 HOH HOH . H 5 HOH A 6 608 11 HOH HOH . H 5 HOH A 7 609 12 HOH HOH . H 5 HOH A 8 610 14 HOH HOH . H 5 HOH A 9 611 15 HOH HOH . H 5 HOH A 10 612 16 HOH HOH . H 5 HOH A 11 613 17 HOH HOH . H 5 HOH A 12 614 18 HOH HOH . H 5 HOH A 13 615 20 HOH HOH . H 5 HOH A 14 616 21 HOH HOH . H 5 HOH A 15 617 22 HOH HOH . H 5 HOH A 16 618 23 HOH HOH . H 5 HOH A 17 619 24 HOH HOH . H 5 HOH A 18 620 25 HOH HOH . H 5 HOH A 19 621 26 HOH HOH . H 5 HOH A 20 622 27 HOH HOH . H 5 HOH A 21 623 28 HOH HOH . H 5 HOH A 22 624 29 HOH HOH . H 5 HOH A 23 625 30 HOH HOH . H 5 HOH A 24 626 31 HOH HOH . H 5 HOH A 25 627 32 HOH HOH . H 5 HOH A 26 628 33 HOH HOH . H 5 HOH A 27 629 49 HOH HOH . H 5 HOH A 28 630 61 HOH HOH . H 5 HOH A 29 631 63 HOH HOH . H 5 HOH A 30 632 64 HOH HOH . H 5 HOH A 31 633 67 HOH HOH . H 5 HOH A 32 634 69 HOH HOH . H 5 HOH A 33 635 70 HOH HOH . H 5 HOH A 34 636 71 HOH HOH . H 5 HOH A 35 637 72 HOH HOH . H 5 HOH A 36 638 73 HOH HOH . I 5 HOH B 1 604 1 HOH HOH . I 5 HOH B 2 605 2 HOH HOH . I 5 HOH B 3 606 3 HOH HOH . I 5 HOH B 4 607 4 HOH HOH . I 5 HOH B 5 608 6 HOH HOH . I 5 HOH B 6 609 13 HOH HOH . I 5 HOH B 7 610 19 HOH HOH . I 5 HOH B 8 611 34 HOH HOH . I 5 HOH B 9 612 35 HOH HOH . I 5 HOH B 10 613 36 HOH HOH . I 5 HOH B 11 614 37 HOH HOH . I 5 HOH B 12 615 38 HOH HOH . I 5 HOH B 13 616 39 HOH HOH . I 5 HOH B 14 617 40 HOH HOH . I 5 HOH B 15 618 41 HOH HOH . I 5 HOH B 16 619 42 HOH HOH . I 5 HOH B 17 620 43 HOH HOH . I 5 HOH B 18 621 44 HOH HOH . I 5 HOH B 19 622 45 HOH HOH . I 5 HOH B 20 623 46 HOH HOH . I 5 HOH B 21 624 47 HOH HOH . I 5 HOH B 22 625 48 HOH HOH . I 5 HOH B 23 626 50 HOH HOH . I 5 HOH B 24 627 51 HOH HOH . I 5 HOH B 25 628 52 HOH HOH . I 5 HOH B 26 629 53 HOH HOH . I 5 HOH B 27 630 54 HOH HOH . I 5 HOH B 28 631 55 HOH HOH . I 5 HOH B 29 632 56 HOH HOH . I 5 HOH B 30 633 57 HOH HOH . I 5 HOH B 31 634 58 HOH HOH . I 5 HOH B 32 635 59 HOH HOH . I 5 HOH B 33 636 60 HOH HOH . I 5 HOH B 34 637 62 HOH HOH . I 5 HOH B 35 638 65 HOH HOH . I 5 HOH B 36 639 66 HOH HOH . I 5 HOH B 37 640 68 HOH HOH . I 5 HOH B 38 641 74 HOH HOH . I 5 HOH B 39 642 75 HOH HOH . I 5 HOH B 40 643 76 HOH HOH . I 5 HOH B 41 644 77 HOH HOH . I 5 HOH B 42 645 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE DHE . . . D 3 27.745 21.85 6.04 1 32.08 ? FE DHE 602 A 1 HETATM 2 C CHA DHE . . . D 3 24.441 22.197 6.788 1 30.89 ? CHA DHE 602 A 1 HETATM 3 C CHB DHE . . . D 3 28.232 19.853 8.772 1 31.62 ? CHB DHE 602 A 1 HETATM 4 C CHC DHE . . . D 3 30.803 21.074 4.882 1 35.04 ? CHC DHE 602 A 1 HETATM 5 C CHD DHE . . . D 3 27.67 24.629 4.156 1 33.63 ? CHD DHE 602 A 1 HETATM 6 N NA DHE . . . D 3 26.483 21.008 7.455 1 24.9 ? NA DHE 602 A 1 HETATM 7 C C1A DHE . . . D 3 25.136 21.308 7.613 1 28.79 ? C1A DHE 602 A 1 HETATM 8 C C2A DHE . . . D 3 24.649 20.53 8.719 1 32.23 ? C2A DHE 602 A 1 HETATM 9 C C3A DHE . . . D 3 25.716 19.834 9.245 1 35.39 ? C3A DHE 602 A 1 HETATM 10 C C4A DHE . . . D 3 26.892 20.207 8.511 1 33.44 ? C4A DHE 602 A 1 HETATM 11 C CMA DHE . . . D 3 25.727 18.834 10.362 1 36.2 ? CMA DHE 602 A 1 HETATM 12 C CAA DHE . . . D 3 23.202 20.456 9.174 1 31.38 ? CAA DHE 602 A 1 HETATM 13 C CBA DHE . . . D 3 22.812 21.42 10.213 1 32.71 ? CBA DHE 602 A 1 HETATM 14 C CGA DHE . . . D 3 21.364 21.62 10.444 1 38.95 ? CGA DHE 602 A 1 HETATM 15 O O1A DHE . . . D 3 20.556 21.319 9.528 1 37.81 ? O1A DHE 602 A 1 HETATM 16 O O2A DHE . . . D 3 20.982 22.085 11.548 1 33.99 ? O2A DHE 602 A 1 HETATM 17 N NB DHE . . . D 3 29.322 20.648 6.707 1 28.58 ? NB DHE 602 A 1 HETATM 18 C C1B DHE . . . D 3 29.298 19.969 7.893 1 29.33 ? C1B DHE 602 A 1 HETATM 19 C C2B DHE . . . D 3 30.623 19.328 8.102 1 32.81 ? C2B DHE 602 A 1 HETATM 20 O OMB DHE . . . D 3 31.043 18.829 9.119 1 32.91 ? OMB DHE 602 A 1 HETATM 21 C C3B DHE . . . D 3 31.359 19.408 6.782 1 32.37 ? C3B DHE 602 A 1 HETATM 22 C CGB DHE . . . D 3 31.205 17.968 6.094 1 25.96 ? CGB DHE 602 A 1 HETATM 23 C CAB DHE . . . D 3 32.806 19.718 6.904 1 37.28 ? CAB DHE 602 A 1 HETATM 24 C CBB DHE . . . D 3 33.162 21.018 7.474 1 43.72 ? CBB DHE 602 A 1 HETATM 25 O O1B DHE . . . D 3 34.333 21.418 7.319 1 43.44 ? O1B DHE 602 A 1 HETATM 26 O O2B DHE . . . D 3 32.3 21.676 8.093 1 45.68 ? O2B DHE 602 A 1 HETATM 27 C C4B DHE . . . D 3 30.486 20.431 6.048 1 31.07 ? C4B DHE 602 A 1 HETATM 28 N NC DHE . . . D 3 29.027 22.727 4.67 1 31.96 ? NC DHE 602 A 1 HETATM 29 C C1C DHE . . . D 3 30.228 22.186 4.334 1 34.56 ? C1C DHE 602 A 1 HETATM 30 C C2C DHE . . . D 3 30.862 23.009 3.279 1 37.08 ? C2C DHE 602 A 1 HETATM 31 O OMC DHE . . . D 3 31.905 22.784 2.725 1 40.84 ? OMC DHE 602 A 1 HETATM 32 C C3C DHE . . . D 3 29.944 24.197 3.031 1 36.26 ? C3C DHE 602 A 1 HETATM 33 C CGC DHE . . . D 3 29.436 24.067 1.509 1 31.99 ? CGC DHE 602 A 1 HETATM 34 C CAC DHE . . . D 3 30.624 25.502 3.189 1 40.07 ? CAC DHE 602 A 1 HETATM 35 C CBC DHE . . . D 3 31.116 25.812 4.532 1 44.75 ? CBC DHE 602 A 1 HETATM 36 O O1C DHE . . . D 3 30.803 26.924 5.035 1 45.73 ? O1C DHE 602 A 1 HETATM 37 O O2C DHE . . . D 3 31.834 24.968 5.127 1 41.29 ? O2C DHE 602 A 1 HETATM 38 C C4C DHE . . . D 3 28.806 23.876 3.994 1 33.32 ? C4C DHE 602 A 1 HETATM 39 N ND DHE . . . D 3 26.235 23.062 5.357 1 29.22 ? ND DHE 602 A 1 HETATM 40 C C1D DHE . . . D 3 26.427 24.166 4.561 1 31.49 ? C1D DHE 602 A 1 HETATM 41 C C2D DHE . . . D 3 25.145 24.709 4.256 1 32.57 ? C2D DHE 602 A 1 HETATM 42 C C3D DHE . . . D 3 24.213 24.009 5.001 1 32.52 ? C3D DHE 602 A 1 HETATM 43 C C4D DHE . . . D 3 24.926 23.035 5.78 1 31.51 ? C4D DHE 602 A 1 HETATM 44 C CMD DHE . . . D 3 24.92 25.833 3.294 1 27.03 ? CMD DHE 602 A 1 HETATM 45 C CAD DHE . . . D 3 22.764 24.209 5.016 1 34.4 ? CAD DHE 602 A 1 HETATM 46 C CBD DHE . . . D 3 21.975 24.297 4.005 1 30.03 ? CBD DHE 602 A 1 HETATM 47 C CGD DHE . . . D 3 20.519 24.126 4.04 1 32.44 ? CGD DHE 602 A 1 HETATM 48 O O1D DHE . . . D 3 19.837 24.61 3.115 1 26.09 ? O1D DHE 602 A 1 HETATM 49 O O2D DHE . . . D 3 20.01 23.497 5.007 1 37.42 ? O2D DHE 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 49 #