data_1BL9 # _model_server_result.job_id 9AKEmhHJfTDlbOg-6QmOgw _model_server_result.datetime_utc '2024-10-12 13:17:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 1BL9 # _exptl.entry_id 1BL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 712.484 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME D' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BL9 _cell.length_a 166.61 _cell.length_b 89 _cell.length_c 112.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C FE HEC . A HEC 601 1_555 A NE2 HIS 51 A HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc2 C FE HEC . A HEC 601 1_555 A SD MET 88 A MET 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? covale ? covale1 C CAB HEC . A HEC 601 1_555 A SG CYS 47 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale2 C CAC HEC . A HEC 601 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc3 D FE DHE . A DHE 602 1_555 A NE2 HIS 182 A HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 F FE HEC . B HEC 601 1_555 B NE2 HIS 51 B HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc5 F FE HEC . B HEC 601 1_555 B SD MET 88 B MET 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? covale ? covale3 F CAB HEC . B HEC 601 1_555 B SG CYS 47 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? covale ? covale4 F CAC HEC . B HEC 601 1_555 B SG CYS 50 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc6 G FE DHE . B DHE 602 1_555 B NE2 HIS 182 B HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc7 G FE DHE . B DHE 602 1_555 E O OH . B OH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C34 H32 Fe N4 O10' _chem_comp.formula_weight 712.484 _chem_comp.id DHE _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME D' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BL9 _atom_sites.fract_transf_matrix[1][1] 0.006002 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 601 601 HEC HEC . D 3 DHE A 1 602 602 DHE DHE . E 4 OH B 1 603 603 OH OH . F 2 HEC B 1 601 601 HEC HEC . G 3 DHE B 1 602 602 DHE DHE . H 5 HOH A 1 603 5 HOH HOH . H 5 HOH A 2 604 7 HOH HOH . H 5 HOH A 3 605 8 HOH HOH . H 5 HOH A 4 606 9 HOH HOH . H 5 HOH A 5 607 10 HOH HOH . H 5 HOH A 6 608 11 HOH HOH . H 5 HOH A 7 609 12 HOH HOH . H 5 HOH A 8 610 14 HOH HOH . H 5 HOH A 9 611 15 HOH HOH . H 5 HOH A 10 612 16 HOH HOH . H 5 HOH A 11 613 17 HOH HOH . H 5 HOH A 12 614 18 HOH HOH . H 5 HOH A 13 615 20 HOH HOH . H 5 HOH A 14 616 21 HOH HOH . H 5 HOH A 15 617 22 HOH HOH . H 5 HOH A 16 618 23 HOH HOH . H 5 HOH A 17 619 24 HOH HOH . H 5 HOH A 18 620 25 HOH HOH . H 5 HOH A 19 621 26 HOH HOH . H 5 HOH A 20 622 27 HOH HOH . H 5 HOH A 21 623 28 HOH HOH . H 5 HOH A 22 624 29 HOH HOH . H 5 HOH A 23 625 30 HOH HOH . H 5 HOH A 24 626 31 HOH HOH . H 5 HOH A 25 627 32 HOH HOH . H 5 HOH A 26 628 33 HOH HOH . H 5 HOH A 27 629 49 HOH HOH . H 5 HOH A 28 630 61 HOH HOH . H 5 HOH A 29 631 63 HOH HOH . H 5 HOH A 30 632 64 HOH HOH . H 5 HOH A 31 633 67 HOH HOH . H 5 HOH A 32 634 69 HOH HOH . H 5 HOH A 33 635 70 HOH HOH . H 5 HOH A 34 636 71 HOH HOH . H 5 HOH A 35 637 72 HOH HOH . H 5 HOH A 36 638 73 HOH HOH . I 5 HOH B 1 604 1 HOH HOH . I 5 HOH B 2 605 2 HOH HOH . I 5 HOH B 3 606 3 HOH HOH . I 5 HOH B 4 607 4 HOH HOH . I 5 HOH B 5 608 6 HOH HOH . I 5 HOH B 6 609 13 HOH HOH . I 5 HOH B 7 610 19 HOH HOH . I 5 HOH B 8 611 34 HOH HOH . I 5 HOH B 9 612 35 HOH HOH . I 5 HOH B 10 613 36 HOH HOH . I 5 HOH B 11 614 37 HOH HOH . I 5 HOH B 12 615 38 HOH HOH . I 5 HOH B 13 616 39 HOH HOH . I 5 HOH B 14 617 40 HOH HOH . I 5 HOH B 15 618 41 HOH HOH . I 5 HOH B 16 619 42 HOH HOH . I 5 HOH B 17 620 43 HOH HOH . I 5 HOH B 18 621 44 HOH HOH . I 5 HOH B 19 622 45 HOH HOH . I 5 HOH B 20 623 46 HOH HOH . I 5 HOH B 21 624 47 HOH HOH . I 5 HOH B 22 625 48 HOH HOH . I 5 HOH B 23 626 50 HOH HOH . I 5 HOH B 24 627 51 HOH HOH . I 5 HOH B 25 628 52 HOH HOH . I 5 HOH B 26 629 53 HOH HOH . I 5 HOH B 27 630 54 HOH HOH . I 5 HOH B 28 631 55 HOH HOH . I 5 HOH B 29 632 56 HOH HOH . I 5 HOH B 30 633 57 HOH HOH . I 5 HOH B 31 634 58 HOH HOH . I 5 HOH B 32 635 59 HOH HOH . I 5 HOH B 33 636 60 HOH HOH . I 5 HOH B 34 637 62 HOH HOH . I 5 HOH B 35 638 65 HOH HOH . I 5 HOH B 36 639 66 HOH HOH . I 5 HOH B 37 640 68 HOH HOH . I 5 HOH B 38 641 74 HOH HOH . I 5 HOH B 39 642 75 HOH HOH . I 5 HOH B 40 643 76 HOH HOH . I 5 HOH B 41 644 77 HOH HOH . I 5 HOH B 42 645 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE DHE . . . G 3 28.113 -0.277 50.498 1 29.26 ? FE DHE 602 B 1 HETATM 2 C CHA DHE . . . G 3 24.792 -0.438 49.916 1 25.93 ? CHA DHE 602 B 1 HETATM 3 C CHB DHE . . . G 3 28.561 1.756 47.787 1 28.29 ? CHB DHE 602 B 1 HETATM 4 C CHC DHE . . . G 3 31.202 0.517 51.595 1 32.83 ? CHC DHE 602 B 1 HETATM 5 C CHD DHE . . . G 3 27.986 -2.943 52.586 1 26.21 ? CHD DHE 602 B 1 HETATM 6 N NA DHE . . . G 3 26.847 0.591 49.112 1 22.08 ? NA DHE 602 B 1 HETATM 7 C C1A DHE . . . G 3 25.49 0.396 49.044 1 25.49 ? C1A DHE 602 B 1 HETATM 8 C C2A DHE . . . G 3 24.987 1.191 47.973 1 27.66 ? C2A DHE 602 B 1 HETATM 9 C C3A DHE . . . G 3 26.062 1.822 47.369 1 27.95 ? C3A DHE 602 B 1 HETATM 10 C C4A DHE . . . G 3 27.241 1.413 48.068 1 26.26 ? C4A DHE 602 B 1 HETATM 11 C CMA DHE . . . G 3 26.069 2.762 46.205 1 26.59 ? CMA DHE 602 B 1 HETATM 12 C CAA DHE . . . G 3 23.535 1.324 47.592 1 29.36 ? CAA DHE 602 B 1 HETATM 13 C CBA DHE . . . G 3 23.049 0.233 46.755 1 36.47 ? CBA DHE 602 B 1 HETATM 14 C CGA DHE . . . G 3 21.622 0.216 46.433 1 42.53 ? CGA DHE 602 B 1 HETATM 15 O O1A DHE . . . G 3 20.79 0.288 47.365 1 41.07 ? O1A DHE 602 B 1 HETATM 16 O O2A DHE . . . G 3 21.283 0.13 45.229 1 44.07 ? O2A DHE 602 B 1 HETATM 17 N NB DHE . . . G 3 29.657 0.978 49.833 1 30.73 ? NB DHE 602 B 1 HETATM 18 C C1B DHE . . . G 3 29.629 1.645 48.642 1 30.2 ? C1B DHE 602 B 1 HETATM 19 C C2B DHE . . . G 3 30.954 2.258 48.398 1 34.17 ? C2B DHE 602 B 1 HETATM 20 O OMB DHE . . . G 3 31.381 2.7 47.353 1 38.51 ? OMB DHE 602 B 1 HETATM 21 C C3B DHE . . . G 3 31.692 2.228 49.716 1 33.94 ? C3B DHE 602 B 1 HETATM 22 C CGB DHE . . . G 3 31.485 3.677 50.374 1 31.95 ? CGB DHE 602 B 1 HETATM 23 C CAB DHE . . . G 3 33.148 1.97 49.59 1 31.5 ? CAB DHE 602 B 1 HETATM 24 C CBB DHE . . . G 3 33.537 0.626 49.171 1 31.15 ? CBB DHE 602 B 1 HETATM 25 O O1B DHE . . . G 3 34.728 0.279 49.333 1 37.14 ? O1B DHE 602 B 1 HETATM 26 O O2B DHE . . . G 3 32.675 -0.129 48.666 1 26.68 ? O2B DHE 602 B 1 HETATM 27 C C4B DHE . . . G 3 30.839 1.184 50.459 1 32.29 ? C4B DHE 602 B 1 HETATM 28 N NC DHE . . . G 3 29.444 -1.177 51.809 1 25.9 ? NC DHE 602 B 1 HETATM 29 C C1C DHE . . . G 3 30.63 -0.597 52.147 1 29.58 ? C1C DHE 602 B 1 HETATM 30 C C2C DHE . . . G 3 31.242 -1.35 53.244 1 28.82 ? C2C DHE 602 B 1 HETATM 31 O OMC DHE . . . G 3 32.255 -1.076 53.798 1 18.89 ? OMC DHE 602 B 1 HETATM 32 C C3C DHE . . . G 3 30.347 -2.535 53.553 1 29.7 ? C3C DHE 602 B 1 HETATM 33 C CGC DHE . . . G 3 29.868 -2.356 55.087 1 24.25 ? CGC DHE 602 B 1 HETATM 34 C CAC DHE . . . G 3 31.019 -3.849 53.399 1 33.7 ? CAC DHE 602 B 1 HETATM 35 C CBC DHE . . . G 3 31.579 -4.141 52.077 1 40.83 ? CBC DHE 602 B 1 HETATM 36 O O1C DHE . . . G 3 31.295 -5.24 51.544 1 47.06 ? O1C DHE 602 B 1 HETATM 37 O O2C DHE . . . G 3 32.326 -3.292 51.523 1 44.56 ? O2C DHE 602 B 1 HETATM 38 C C4C DHE . . . G 3 29.183 -2.237 52.612 1 28.28 ? C4C DHE 602 B 1 HETATM 39 N ND DHE . . . G 3 26.611 -1.484 51.169 1 24.76 ? ND DHE 602 B 1 HETATM 40 C C1D DHE . . . G 3 26.762 -2.504 52.092 1 24.91 ? C1D DHE 602 B 1 HETATM 41 C C2D DHE . . . G 3 25.452 -3.001 52.401 1 22.31 ? C2D DHE 602 B 1 HETATM 42 C C3D DHE . . . G 3 24.539 -2.257 51.661 1 24.96 ? C3D DHE 602 B 1 HETATM 43 C C4D DHE . . . G 3 25.276 -1.335 50.862 1 25.02 ? C4D DHE 602 B 1 HETATM 44 C CMD DHE . . . G 3 25.204 -4.134 53.332 1 16.31 ? CMD DHE 602 B 1 HETATM 45 C CAD DHE . . . G 3 23.076 -2.387 51.638 1 30.19 ? CAD DHE 602 B 1 HETATM 46 C CBD DHE . . . G 3 22.281 -2.53 52.633 1 34.29 ? CBD DHE 602 B 1 HETATM 47 C CGD DHE . . . G 3 20.835 -2.319 52.612 1 35.7 ? CGD DHE 602 B 1 HETATM 48 O O1D DHE . . . G 3 20.182 -2.584 53.64 1 33.22 ? O1D DHE 602 B 1 HETATM 49 O O2D DHE . . . G 3 20.308 -1.879 51.558 1 39.98 ? O2D DHE 602 B 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #