data_1BLF # _model_server_result.job_id eyFwRMMlczanDt1B8c2-ug _model_server_result.datetime_utc '2024-11-27 08:15:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1blf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":690}' # _entry.id 1BLF # _exptl.entry_id 1BLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BLF _cell.length_a 138.86 _cell.length_b 87.01 _cell.length_c 73.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 3 5 4 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 3 6 4 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 476 NAG 2 n B NAG 2 B 2 NAG ? 476 NAG 2 n B BMA 3 B 3 BMA ? 476 MAN 3 n C NAG 1 C 1 NAG ? 545 NAG 3 n C NAG 2 C 2 NAG ? 545 NAG 3 n C BMA 3 C 3 BMA ? 545 MAN 3 n C MAN 4 C 4 MAN ? 545 MAN 3 n C MAN 5 C 5 MAN ? 545 MAN 3 n C MAN 6 C 6 MAN ? 545 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 19 A CYS 19 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 115 A CYS 115 1_555 A SG CYS 198 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 157 A CYS 157 1_555 A SG CYS 173 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 160 A CYS 160 1_555 A SG CYS 183 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 170 A CYS 170 1_555 A SG CYS 181 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 231 A CYS 231 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 348 A CYS 348 1_555 A SG CYS 380 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 A SG CYS 358 A CYS 358 1_555 A SG CYS 371 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 A SG CYS 405 A CYS 405 1_555 A SG CYS 684 A CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 A SG CYS 425 A CYS 425 1_555 A SG CYS 647 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 A SG CYS 457 A CYS 457 1_555 A SG CYS 532 A CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 A SG CYS 481 A CYS 481 1_555 A SG CYS 675 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 A SG CYS 491 A CYS 491 1_555 A SG CYS 505 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 A SG CYS 502 A CYS 502 1_555 A SG CYS 515 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 A SG CYS 573 A CYS 573 1_555 A SG CYS 587 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf17 A SG CYS 625 A CYS 625 1_555 A SG CYS 630 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 368 A ASN 368 1_555 D C1 NAG . A NAG 690 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 476 A ASN 476 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 545 A ASN 545 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale9 C O3 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale10 C O6 MAN . C MAN 4 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? metalc ? metalc1 A OD1 ASP 60 A ASP 60 1_555 E FE FE . A FE 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc2 A OH TYR 92 A TYR 92 1_555 E FE FE . A FE 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc3 A OH TYR 192 A TYR 192 1_555 E FE FE . A FE 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 A NE2 HIS 253 A HIS 253 1_555 E FE FE . A FE 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc5 A OD1 ASP 395 A ASP 395 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc6 A OH TYR 433 A TYR 433 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc7 A OH TYR 526 A TYR 526 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc8 A NE2 HIS 595 A HIS 595 1_555 F FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc9 E FE FE . A FE 700 1_555 G O1 CO3 . A CO3 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc10 E FE FE . A FE 700 1_555 G O2 CO3 . A CO3 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc11 F FE FE . A FE 701 1_555 H O1 CO3 . A CO3 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc12 F FE FE . A FE 701 1_555 H O2 CO3 . A CO3 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 288 n n C1 O1 NAG sing 289 n n C1 O5 NAG sing 290 n n C1 H1 NAG sing 291 n n C2 C3 NAG sing 292 n n C2 N2 NAG sing 293 n n C2 H2 NAG sing 294 n n C3 C4 NAG sing 295 n n C3 O3 NAG sing 296 n n C3 H3 NAG sing 297 n n C4 C5 NAG sing 298 n n C4 O4 NAG sing 299 n n C4 H4 NAG sing 300 n n C5 C6 NAG sing 301 n n C5 O5 NAG sing 302 n n C5 H5 NAG sing 303 n n C6 O6 NAG sing 304 n n C6 H61 NAG sing 305 n n C6 H62 NAG sing 306 n n C7 C8 NAG sing 307 n n C7 N2 NAG sing 308 n n C7 O7 NAG doub 309 n n C8 H81 NAG sing 310 n n C8 H82 NAG sing 311 n n C8 H83 NAG sing 312 n n N2 HN2 NAG sing 313 n n O1 HO1 NAG sing 314 n n O3 HO3 NAG sing 315 n n O4 HO4 NAG sing 316 n n O6 HO6 NAG sing 317 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1BLF _atom_sites.fract_transf_matrix[1][1] 0.007201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 690 368 NAG NAG A E 5 FE A 1 700 690 FE FE . F 5 FE A 1 701 691 FE FE . G 6 CO3 A 1 702 692 CO3 CO3 . H 6 CO3 A 1 703 693 CO3 CO3 . I 7 HOH A 1 704 701 HOH HOH . I 7 HOH A 2 705 702 HOH HOH . I 7 HOH A 3 706 703 HOH HOH . I 7 HOH A 4 707 704 HOH HOH . I 7 HOH A 5 708 705 HOH HOH . I 7 HOH A 6 709 706 HOH HOH . I 7 HOH A 7 710 707 HOH HOH . I 7 HOH A 8 711 708 HOH HOH . I 7 HOH A 9 712 709 HOH HOH . I 7 HOH A 10 713 710 HOH HOH . I 7 HOH A 11 714 711 HOH HOH . I 7 HOH A 12 715 712 HOH HOH . I 7 HOH A 13 716 713 HOH HOH . I 7 HOH A 14 717 714 HOH HOH . I 7 HOH A 15 718 715 HOH HOH . I 7 HOH A 16 719 716 HOH HOH . I 7 HOH A 17 720 717 HOH HOH . I 7 HOH A 18 721 718 HOH HOH . I 7 HOH A 19 722 719 HOH HOH . I 7 HOH A 20 723 720 HOH HOH . I 7 HOH A 21 724 721 HOH HOH . I 7 HOH A 22 725 722 HOH HOH . I 7 HOH A 23 726 723 HOH HOH . I 7 HOH A 24 727 724 HOH HOH . I 7 HOH A 25 728 725 HOH HOH . I 7 HOH A 26 729 726 HOH HOH . I 7 HOH A 27 730 727 HOH HOH . I 7 HOH A 28 731 728 HOH HOH . I 7 HOH A 29 732 729 HOH HOH . I 7 HOH A 30 733 730 HOH HOH . I 7 HOH A 31 734 731 HOH HOH . I 7 HOH A 32 735 732 HOH HOH . I 7 HOH A 33 736 733 HOH HOH . I 7 HOH A 34 737 734 HOH HOH . I 7 HOH A 35 738 735 HOH HOH . I 7 HOH A 36 739 736 HOH HOH . I 7 HOH A 37 740 737 HOH HOH . I 7 HOH A 38 741 738 HOH HOH . I 7 HOH A 39 742 739 HOH HOH . I 7 HOH A 40 743 740 HOH HOH . I 7 HOH A 41 744 741 HOH HOH . I 7 HOH A 42 745 742 HOH HOH . I 7 HOH A 43 746 743 HOH HOH . I 7 HOH A 44 747 744 HOH HOH . I 7 HOH A 45 748 745 HOH HOH . I 7 HOH A 46 749 746 HOH HOH . I 7 HOH A 47 750 747 HOH HOH . I 7 HOH A 48 751 748 HOH HOH . I 7 HOH A 49 752 749 HOH HOH . I 7 HOH A 50 753 750 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . A D 4 58.832 61.83 -3.918 1 87.14 ? C1 NAG 690 A 1 HETATM 2 C C2 NAG . . A D 4 59.973 61.416 -4.86 1 87.78 ? C2 NAG 690 A 1 HETATM 3 C C3 NAG . . A D 4 59.529 61.627 -6.305 1 89.08 ? C3 NAG 690 A 1 HETATM 4 C C4 NAG . . A D 4 58.284 60.76 -6.551 1 90.7 ? C4 NAG 690 A 1 HETATM 5 C C5 NAG . . A D 4 57.193 61.137 -5.542 1 91.21 ? C5 NAG 690 A 1 HETATM 6 C C6 NAG . . A D 4 55.951 60.276 -5.701 1 96.44 ? C6 NAG 690 A 1 HETATM 7 C C7 NAG . . A D 4 62.19 61.614 -3.857 1 96.3 ? C7 NAG 690 A 1 HETATM 8 C C8 NAG . . A D 4 63.537 62.269 -3.97 1 100.44 ? C8 NAG 690 A 1 HETATM 9 N N2 NAG . . A D 4 61.221 62.123 -4.627 1 92.55 ? N2 NAG 690 A 1 HETATM 10 O O3 NAG . . A D 4 60.568 61.248 -7.199 1 94.24 ? O3 NAG 690 A 1 HETATM 11 O O4 NAG . . A D 4 57.812 60.94 -7.882 1 96.57 ? O4 NAG 690 A 1 HETATM 12 O O5 NAG . . A D 4 57.693 61.011 -4.194 1 92.53 ? O5 NAG 690 A 1 HETATM 13 O O6 NAG . . A D 4 56.27 58.927 -5.395 1 102.34 ? O6 NAG 690 A 1 HETATM 14 O O7 NAG . . A D 4 62.024 60.644 -3.149 1 99.86 ? O7 NAG 690 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 97 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #