data_1BM1 # _model_server_result.job_id F6p7BcAfVSfDJ5lvIQGCgg _model_server_result.datetime_utc '2024-11-08 07:05:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":269}' # _entry.id 1BM1 # _exptl.entry_id 1BM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 887.195 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BM1 _cell.length_a 104.7 _cell.length_b 104.7 _cell.length_c 114.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 104.7 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 52.35 90.67286 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 250 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.526 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C46 H96 O11 P2' _chem_comp.formula_weight 887.195 _chem_comp.id DPG _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DPHPG # _atom_sites.entry_id 1BM1 _atom_sites.fract_transf_matrix[1][1] 0.009551 _atom_sites.fract_transf_matrix[1][2] 0.005514 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 250 250 RET RET . C 3 DPG A 1 269 269 DPG DPG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DPG . . . C 3 36.548 44.05 43.388 1 57 ? C1 DPG 269 A 1 HETATM 2 C C2 DPG . . . C 3 35.676 43.088 44.203 1 57 ? C2 DPG 269 A 1 HETATM 3 C C3 DPG . . . C 3 36.064 43.073 45.705 1 57 ? C3 DPG 269 A 1 HETATM 4 C C4 DPG . . . C 3 36.8 46.133 50.108 1 57 ? C4 DPG 269 A 1 HETATM 5 C C5 DPG . . . C 3 38.407 46.137 50.25 1 57 ? C5 DPG 269 A 1 HETATM 6 C C6 DPG . . . C 3 38.903 47.314 51.153 1 57 ? C6 DPG 269 A 1 HETATM 7 C C11 DPG . . . C 3 34.933 45.495 42.138 1 57 ? C11 DPG 269 A 1 HETATM 8 C C12 DPG . . . C 3 35.628 45.551 40.719 1 57 ? C12 DPG 269 A 1 HETATM 9 C C13 DPG . . . C 3 34.7 45.537 39.456 1 57 ? C13 DPG 269 A 1 HETATM 10 C C14 DPG . . . C 3 33.343 45.021 39.854 1 57 ? C14 DPG 269 A 1 HETATM 11 C C15 DPG . . . C 3 34.598 46.909 38.818 1 57 ? C15 DPG 269 A 1 HETATM 12 C C16 DPG . . . C 3 34.311 46.995 37.298 1 57 ? C16 DPG 269 A 1 HETATM 13 C C17 DPG . . . C 3 34.232 48.415 36.658 1 57 ? C17 DPG 269 A 1 HETATM 14 C C18 DPG . . . C 3 34.734 48.629 35.198 1 57 ? C18 DPG 269 A 1 HETATM 15 C C19 DPG . . . C 3 36.214 48.264 35.058 1 57 ? C19 DPG 269 A 1 HETATM 16 C C20 DPG . . . C 3 34.582 50.097 34.726 1 57 ? C20 DPG 269 A 1 HETATM 17 C C21 DPG . . . C 3 34.623 50.16 33.196 1 57 ? C21 DPG 269 A 1 HETATM 18 C C41 DPG . . . C 3 36.855 41.098 42.999 1 57 ? C41 DPG 269 A 1 HETATM 19 C C42 DPG . . . C 3 36.314 39.963 42.032 1 57 ? C42 DPG 269 A 1 HETATM 20 C C43 DPG . . . C 3 37.219 39.393 40.872 1 57 ? C43 DPG 269 A 1 HETATM 21 C C44 DPG . . . C 3 38.136 38.31 41.553 1 57 ? C44 DPG 269 A 1 HETATM 22 C C45 DPG . . . C 3 36.385 38.937 39.566 1 57 ? C45 DPG 269 A 1 HETATM 23 C C46 DPG . . . C 3 37.055 38.034 38.424 1 57 ? C46 DPG 269 A 1 HETATM 24 C C47 DPG . . . C 3 36.641 38.252 36.936 1 57 ? C47 DPG 269 A 1 HETATM 25 C C48 DPG . . . C 3 37.656 38.616 35.81 1 57 ? C48 DPG 269 A 1 HETATM 26 C C49 DPG . . . C 3 38.426 39.909 36.137 1 57 ? C49 DPG 269 A 1 HETATM 27 C C50 DPG . . . C 3 36.898 38.736 34.457 1 57 ? C50 DPG 269 A 1 HETATM 28 C C51 DPG . . . C 3 37.681 39.388 33.303 1 57 ? C51 DPG 269 A 1 HETATM 29 C C52 DPG . . . C 3 36.871 40.411 32.524 1 57 ? C52 DPG 269 A 1 HETATM 30 C C53 DPG . . . C 3 37.683 41.536 31.756 1 57 ? C53 DPG 269 A 1 HETATM 31 C C54 DPG . . . C 3 38.357 41.058 30.452 1 57 ? C54 DPG 269 A 1 HETATM 32 C C55 DPG . . . C 3 36.86 42.865 31.662 1 57 ? C55 DPG 269 A 1 HETATM 33 C C56 DPG . . . C 3 35.746 42.839 30.594 1 57 ? C56 DPG 269 A 1 HETATM 34 C C57 DPG . . . C 3 35.104 44.167 30.16 1 57 ? C57 DPG 269 A 1 HETATM 35 C C58 DPG . . . C 3 33.997 43.864 29.079 1 57 ? C58 DPG 269 A 1 HETATM 36 C C59 DPG . . . C 3 32.844 42.915 29.493 1 57 ? C59 DPG 269 A 1 HETATM 37 C C60 DPG . . . C 3 33.445 45.12 28.312 1 57 ? C60 DPG 269 A 1 HETATM 38 O O1 DPG . . . C 3 35.916 45.371 43.251 1 57 ? O1 DPG 269 A 1 HETATM 39 O O2 DPG . . . C 3 35.684 41.69 43.674 1 57 ? O2 DPG 269 A 1 HETATM 40 O O3 DPG . . . C 3 36.093 44.409 46.402 1 57 ? O3 DPG 269 A 1 HETATM 41 O O4 DPG . . . C 3 38.158 44.249 47.772 1 57 ? O4 DPG 269 A 1 HETATM 42 O O5 DPG . . . C 3 36.102 43.199 48.801 1 57 ? O5 DPG 269 A 1 HETATM 43 O O6 DPG . . . C 3 36.265 45.774 48.725 1 57 ? O6 DPG 269 A 1 HETATM 44 O O7 DPG . . . C 3 39.014 46.404 48.952 1 57 ? O7 DPG 269 A 1 HETATM 45 O O8 DPG . . . C 3 38.524 47.294 52.562 1 57 ? O8 DPG 269 A 1 HETATM 46 O O9 DPG . . . C 3 37.457 48.213 54.794 1 57 ? O9 DPG 269 A 1 HETATM 47 O O10 DPG . . . C 3 38.169 49.868 52.965 1 57 ? O10 DPG 269 A 1 HETATM 48 O O11 DPG . . . C 3 36.157 48.316 52.713 1 57 ? O11 DPG 269 A 1 HETATM 49 P P1 DPG . . . C 3 36.67 44.337 47.973 1 57 ? P1 DPG 269 A 1 HETATM 50 P P2 DPG . . . C 3 37.572 48.466 53.286 1 57 ? P2 DPG 269 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #