data_1BM6 # _model_server_result.job_id gpnCTpf860BP8lqOxWBGEA _model_server_result.datetime_utc '2024-10-24 04:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 1BM6 # _exptl.entry_id 1BM6 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 132.161 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HYDROXYAMINOVALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BM6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F NA HAV . A HAV 1 1_555 G CB 3MP . A 3MP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale2 F NA HAV . A HAV 1 1_555 H S MSB . A MSB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? metalc ? metalc1 F O1 HAV . A HAV 1 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 F O HAV . A HAV 1 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc3 A O ASP 59 A ASP 141 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 C ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 A OD1 ASP 76 A ASP 158 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc6 A O ASP 76 A ASP 158 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc7 A O GLY 77 A GLY 159 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc8 A N GLY 77 A GLY 159 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc9 A O GLY 79 A GLY 161 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc10 A O VAL 81 A VAL 163 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc11 A NE2 HIS 84 A HIS 166 1_555 C ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 A O GLY 91 A GLY 173 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc13 A O ASN 93 A ASN 175 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc14 A O GLY 94 A GLY 176 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc15 A OD1 ASP 95 A ASP 177 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc16 A ND1 HIS 97 A HIS 179 1_555 C ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc17 A OD2 ASP 99 A ASP 181 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc19 A NE2 HIS 119 A HIS 201 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc20 A NE2 HIS 123 A HIS 205 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc21 A NE2 HIS 129 A HIS 211 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? # _chem_comp.formula 'C5 H12 N2 O2' _chem_comp.formula_weight 132.161 _chem_comp.id HAV _chem_comp.mon_nstd_flag . _chem_comp.name HYDROXYAMINOVALINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NA CA HAV sing 130 n n NA HNA1 HAV sing 131 n n NA HNA2 HAV sing 132 n n CA CB HAV sing 133 n n CA C HAV sing 134 n n CA HA HAV sing 135 n n CB CG1 HAV sing 136 n n CB CG2 HAV sing 137 n n CB HB HAV sing 138 n n CG1 HG11 HAV sing 139 n n CG1 HG12 HAV sing 140 n n CG1 HG13 HAV sing 141 n n CG2 HG21 HAV sing 142 n n CG2 HG22 HAV sing 143 n n CG2 HG23 HAV sing 144 n n C O HAV doub 145 n n C N HAV sing 146 n n O1 N HAV sing 147 n n O1 HO1 HAV sing 148 n n N HN HAV sing 149 n n # _atom_sites.entry_id 1BM6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 256 256 ZN ZN . C 2 ZN A 1 257 257 ZN ZN . D 3 CA A 1 258 258 CA CA . E 3 CA A 1 259 259 CA CA . F 4 HAV A 1 1 1 HAV HAV . G 5 3MP A 1 2 2 3MP 3MP . H 6 MSB A 1 3 3 MSB MSB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NA HAV . . . F 4 -1.631 0.751 0.853 1 0 ? NA HAV 1 A 1 HETATM 2 C CA HAV . . . F 4 -2.485 -0.38 0.425 1 0 ? CA HAV 1 A 1 HETATM 3 C CB HAV . . . F 4 -2.68 -1.262 1.639 1 0 ? CB HAV 1 A 1 HETATM 4 C CG1 HAV . . . F 4 -3.173 -2.644 1.21 1 0 ? CG1 HAV 1 A 1 HETATM 5 C CG2 HAV . . . F 4 -3.709 -0.614 2.565 1 0 ? CG2 HAV 1 A 1 HETATM 6 C C HAV . . . F 4 -1.796 -1.187 -0.689 1 0 ? C HAV 1 A 1 HETATM 7 O O HAV . . . F 4 -0.621 -1.04 -0.957 1 0 ? O HAV 1 A 1 HETATM 8 O O1 HAV . . . F 4 -1.981 -2.821 -2.356 1 0 ? O1 HAV 1 A 1 HETATM 9 N N HAV . . . F 4 -2.54 -2.035 -1.349 1 0 ? N HAV 1 A 1 HETATM 10 H HA HAV . . . F 4 -3.44 -0.016 0.082 1 0 ? HA HAV 1 A 1 HETATM 11 H HB HAV . . . F 4 -1.729 -1.346 2.15 1 0 ? HB HAV 1 A 1 HETATM 12 H HG11 HAV . . . F 4 -2.435 -3.106 0.571 1 0 ? HG11 HAV 1 A 1 HETATM 13 H HG12 HAV . . . F 4 -3.332 -3.258 2.082 1 0 ? HG12 HAV 1 A 1 HETATM 14 H HG13 HAV . . . F 4 -4.101 -2.539 0.669 1 0 ? HG13 HAV 1 A 1 HETATM 15 H HG21 HAV . . . F 4 -4.23 0.168 2.031 1 0 ? HG21 HAV 1 A 1 HETATM 16 H HG22 HAV . . . F 4 -4.417 -1.359 2.894 1 0 ? HG22 HAV 1 A 1 HETATM 17 H HG23 HAV . . . F 4 -3.206 -0.191 3.423 1 0 ? HG23 HAV 1 A 1 HETATM 18 H HO1 HAV . . . F 4 -2.641 -3.169 -2.96 1 0 ? HO1 HAV 1 A 1 HETATM 19 H HN HAV . . . F 4 -3.493 -2.126 -1.128 1 0 ? HN HAV 1 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 5269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #