data_1BM6 # _model_server_result.job_id LfFoVJlJ9qNjwo4q0LBZZg _model_server_result.datetime_utc '2024-11-21 17:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2}' # _entry.id 1BM6 # _exptl.entry_id 1BM6 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 93.126 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-METHYLPYRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BM6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F NA HAV . A HAV 1 1_555 G CB 3MP . A 3MP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale2 F NA HAV . A HAV 1 1_555 H S MSB . A MSB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? metalc ? metalc1 F O1 HAV . A HAV 1 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 F O HAV . A HAV 1 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc3 A O ASP 59 A ASP 141 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 C ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 A OD1 ASP 76 A ASP 158 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc6 A O ASP 76 A ASP 158 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc7 A O GLY 77 A GLY 159 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc8 A N GLY 77 A GLY 159 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc9 A O GLY 79 A GLY 161 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc10 A O VAL 81 A VAL 163 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc11 A NE2 HIS 84 A HIS 166 1_555 C ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc12 A O GLY 91 A GLY 173 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc13 A O ASN 93 A ASN 175 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc14 A O GLY 94 A GLY 176 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc15 A OD1 ASP 95 A ASP 177 1_555 E CA CA . A CA 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc16 A ND1 HIS 97 A HIS 179 1_555 C ZN ZN . A ZN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc17 A OD2 ASP 99 A ASP 181 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 D CA CA . A CA 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc19 A NE2 HIS 119 A HIS 201 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc20 A NE2 HIS 123 A HIS 205 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc21 A NE2 HIS 129 A HIS 211 1_555 B ZN ZN . A ZN 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? # _chem_comp.formula 'C6 H7 N' _chem_comp.formula_weight 93.126 _chem_comp.id 3MP _chem_comp.mon_nstd_flag . _chem_comp.name 3-METHYLPYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CB CG 3MP sing 1 n n CB HB1 3MP sing 2 n n CB HB2 3MP sing 3 n n CB HB3 3MP sing 4 n n CG CD1 3MP doub 5 n y CG CD2 3MP sing 6 n y CD1 CE1 3MP sing 7 n y CD1 HD1 3MP sing 8 n n CD2 NE2 3MP doub 9 n y CD2 HD2 3MP sing 10 n n CE1 CZ 3MP doub 11 n y CE1 HE1 3MP sing 12 n n CZ NE2 3MP sing 13 n y CZ HZ 3MP sing 14 n n # _atom_sites.entry_id 1BM6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 256 256 ZN ZN . C 2 ZN A 1 257 257 ZN ZN . D 3 CA A 1 258 258 CA CA . E 3 CA A 1 259 259 CA CA . F 4 HAV A 1 1 1 HAV HAV . G 5 3MP A 1 2 2 3MP 3MP . H 6 MSB A 1 3 3 MSB MSB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CB 3MP . . . G 5 -0.207 0.39 1.127 1 0 ? CB 3MP 2 A 1 HETATM 2 C CG 3MP . . . G 5 0.112 0.734 2.56 1 0 ? CG 3MP 2 A 1 HETATM 3 C CD1 3MP . . . G 5 -0.744 1.537 3.297 1 0 ? CD1 3MP 2 A 1 HETATM 4 C CD2 3MP . . . G 5 1.273 0.241 3.168 1 0 ? CD2 3MP 2 A 1 HETATM 5 C CE1 3MP . . . G 5 -0.409 1.819 4.612 1 0 ? CE1 3MP 2 A 1 HETATM 6 C CZ 3MP . . . G 5 0.773 1.285 5.141 1 0 ? CZ 3MP 2 A 1 HETATM 7 N NE2 3MP . . . G 5 1.606 0.508 4.438 1 0 ? NE2 3MP 2 A 1 HETATM 8 H HB1 3MP . . . G 5 -0.065 -0.667 0.979 1 0 ? HB1 3MP 2 A 1 HETATM 9 H HB2 3MP . . . G 5 0.444 0.936 0.47 1 0 ? HB2 3MP 2 A 1 HETATM 10 H HD1 3MP . . . G 5 -1.647 1.934 2.858 1 0 ? HD1 3MP 2 A 1 HETATM 11 H HD2 3MP . . . G 5 1.932 -0.385 2.584 1 0 ? HD2 3MP 2 A 1 HETATM 12 H HE1 3MP . . . G 5 -1.05 2.439 5.219 1 0 ? HE1 3MP 2 A 1 HETATM 13 H HZ 3MP . . . G 5 1.025 1.512 6.167 1 0 ? HZ 3MP 2 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 5537 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #