data_1BMK # _model_server_result.job_id 58J9eLTxCVIbXmExTESZEA _model_server_result.datetime_utc '2024-11-13 19:19:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 1BMK # _exptl.entry_id 1BMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.341 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(FLUOROPHENYL)-1-CYCLOPROPYLMETHYL-5-(2-AMINO-4-PYRIMIDINYL)IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BMK _cell.length_a 45.58 _cell.length_b 85.22 _cell.length_c 123.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 F N5' _chem_comp.formula_weight 309.341 _chem_comp.id SB5 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(FLUOROPHENYL)-1-CYCLOPROPYLMETHYL-5-(2-AMINO-4-PYRIMIDINYL)IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FA1 CA2 SB5 sing 277 n n CA1 CA2 SB5 doub 278 n y CA1 CA6 SB5 sing 279 n y CA1 HCA1 SB5 sing 280 n n CA2 CA3 SB5 sing 281 n y CA3 CA4 SB5 doub 282 n y CA3 HCA3 SB5 sing 283 n n CA4 CA5 SB5 sing 284 n y CA4 HCA4 SB5 sing 285 n n CA5 CA6 SB5 doub 286 n y CA5 CC3 SB5 sing 287 n y CA6 HCA6 SB5 sing 288 n n CB1 NB2 SB5 doub 289 n y CB1 CB6 SB5 sing 290 n y CB1 HCB1 SB5 sing 291 n n NB2 CB3 SB5 sing 292 n y CB3 NB4 SB5 doub 293 n y CB3 NB7 SB5 sing 294 n n NB4 CB5 SB5 sing 295 n y CB5 CB6 SB5 doub 296 n y CB5 CC2 SB5 sing 297 n y CB6 HCB6 SB5 sing 298 n n NB7 HN71 SB5 sing 299 n n NB7 HN72 SB5 sing 300 n n NC1 CC2 SB5 sing 301 n y NC1 CC5 SB5 sing 302 n y NC1 CD1 SB5 sing 303 n n CC2 CC3 SB5 doub 304 n y CC3 NC4 SB5 sing 305 n y NC4 CC5 SB5 doub 306 n y CC5 HCC5 SB5 sing 307 n n CD1 CE1 SB5 sing 308 n n CD1 HCD1 SB5 sing 309 n n CD1 HCD2 SB5 sing 310 n n CE1 CE2 SB5 sing 311 n n CE1 CE3 SB5 sing 312 n n CE1 HCE1 SB5 sing 313 n n CE2 CE3 SB5 sing 314 n n CE2 HC21 SB5 sing 315 n n CE2 HC22 SB5 sing 316 n n CE3 HC31 SB5 sing 317 n n CE3 HC32 SB5 sing 318 n n # _atom_sites.entry_id 1BMK _atom_sites.fract_transf_matrix[1][1] 0.021939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SB5 A 1 800 800 SB5 SB5 . C 3 HOH A 1 500 500 HOH HOH . C 3 HOH A 2 501 501 HOH HOH . C 3 HOH A 3 502 502 HOH HOH . C 3 HOH A 4 503 503 HOH HOH . C 3 HOH A 5 504 504 HOH HOH . C 3 HOH A 6 505 505 HOH HOH . C 3 HOH A 7 506 506 HOH HOH . C 3 HOH A 8 507 507 HOH HOH . C 3 HOH A 9 508 508 HOH HOH . C 3 HOH A 10 509 509 HOH HOH . C 3 HOH A 11 510 510 HOH HOH . C 3 HOH A 12 511 511 HOH HOH . C 3 HOH A 13 512 512 HOH HOH . C 3 HOH A 14 513 513 HOH HOH . C 3 HOH A 15 514 514 HOH HOH . C 3 HOH A 16 515 515 HOH HOH . C 3 HOH A 17 516 516 HOH HOH . C 3 HOH A 18 517 517 HOH HOH . C 3 HOH A 19 518 518 HOH HOH . C 3 HOH A 20 519 519 HOH HOH . C 3 HOH A 21 520 520 HOH HOH . C 3 HOH A 22 521 521 HOH HOH . C 3 HOH A 23 522 522 HOH HOH . C 3 HOH A 24 523 523 HOH HOH . C 3 HOH A 25 524 524 HOH HOH . C 3 HOH A 26 525 525 HOH HOH . C 3 HOH A 27 526 526 HOH HOH . C 3 HOH A 28 527 527 HOH HOH . C 3 HOH A 29 528 528 HOH HOH . C 3 HOH A 30 529 529 HOH HOH . C 3 HOH A 31 530 530 HOH HOH . C 3 HOH A 32 531 531 HOH HOH . C 3 HOH A 33 532 532 HOH HOH . C 3 HOH A 34 533 533 HOH HOH . C 3 HOH A 35 534 534 HOH HOH . C 3 HOH A 36 535 535 HOH HOH . C 3 HOH A 37 536 536 HOH HOH . C 3 HOH A 38 537 537 HOH HOH . C 3 HOH A 39 538 538 HOH HOH . C 3 HOH A 40 539 539 HOH HOH . C 3 HOH A 41 540 540 HOH HOH . C 3 HOH A 42 541 541 HOH HOH . C 3 HOH A 43 542 542 HOH HOH . C 3 HOH A 44 543 543 HOH HOH . C 3 HOH A 45 544 544 HOH HOH . C 3 HOH A 46 545 545 HOH HOH . C 3 HOH A 47 546 546 HOH HOH . C 3 HOH A 48 547 547 HOH HOH . C 3 HOH A 49 548 548 HOH HOH . C 3 HOH A 50 549 549 HOH HOH . C 3 HOH A 51 550 550 HOH HOH . C 3 HOH A 52 551 551 HOH HOH . C 3 HOH A 53 552 552 HOH HOH . C 3 HOH A 54 553 553 HOH HOH . C 3 HOH A 55 554 554 HOH HOH . C 3 HOH A 56 555 555 HOH HOH . C 3 HOH A 57 556 556 HOH HOH . C 3 HOH A 58 557 557 HOH HOH . C 3 HOH A 59 558 558 HOH HOH . C 3 HOH A 60 560 560 HOH HOH . C 3 HOH A 61 561 561 HOH HOH . C 3 HOH A 62 562 562 HOH HOH . C 3 HOH A 63 600 600 HOH HOH . C 3 HOH A 64 602 602 HOH HOH . C 3 HOH A 65 603 603 HOH HOH . C 3 HOH A 66 605 605 HOH HOH . C 3 HOH A 67 606 606 HOH HOH . C 3 HOH A 68 608 608 HOH HOH . C 3 HOH A 69 609 609 HOH HOH . C 3 HOH A 70 610 610 HOH HOH . C 3 HOH A 71 612 612 HOH HOH . C 3 HOH A 72 613 613 HOH HOH . C 3 HOH A 73 614 614 HOH HOH . C 3 HOH A 74 615 615 HOH HOH . C 3 HOH A 75 616 616 HOH HOH . C 3 HOH A 76 617 617 HOH HOH . C 3 HOH A 77 618 618 HOH HOH . C 3 HOH A 78 619 619 HOH HOH . C 3 HOH A 79 620 620 HOH HOH . C 3 HOH A 80 621 621 HOH HOH . C 3 HOH A 81 622 622 HOH HOH . C 3 HOH A 82 623 623 HOH HOH . C 3 HOH A 83 624 624 HOH HOH . C 3 HOH A 84 625 625 HOH HOH . C 3 HOH A 85 626 626 HOH HOH . C 3 HOH A 86 627 627 HOH HOH . C 3 HOH A 87 628 628 HOH HOH . C 3 HOH A 88 629 629 HOH HOH . C 3 HOH A 89 630 630 HOH HOH . C 3 HOH A 90 631 631 HOH HOH . C 3 HOH A 91 632 632 HOH HOH . C 3 HOH A 92 633 633 HOH HOH . C 3 HOH A 93 634 634 HOH HOH . C 3 HOH A 94 635 635 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FA1 SB5 . . . B 2 7.973 10.854 30.287 1 44.81 ? FA1 SB5 800 A 1 HETATM 2 C CA1 SB5 . . . B 2 6.115 12.249 30.931 1 49.28 ? CA1 SB5 800 A 1 HETATM 3 C CA2 SB5 . . . B 2 6.756 11.394 29.995 1 48.31 ? CA2 SB5 800 A 1 HETATM 4 C CA3 SB5 . . . B 2 6.139 11.1 28.755 1 49.84 ? CA3 SB5 800 A 1 HETATM 5 C CA4 SB5 . . . B 2 4.885 11.662 28.45 1 47.39 ? CA4 SB5 800 A 1 HETATM 6 C CA5 SB5 . . . B 2 4.211 12.533 29.376 1 49.11 ? CA5 SB5 800 A 1 HETATM 7 C CA6 SB5 . . . B 2 4.853 12.814 30.623 1 46.49 ? CA6 SB5 800 A 1 HETATM 8 C CB1 SB5 . . . B 2 1.349 8.914 30.28 1 53.54 ? CB1 SB5 800 A 1 HETATM 9 N NB2 SB5 . . . B 2 0.424 8.416 29.422 1 53.65 ? NB2 SB5 800 A 1 HETATM 10 C CB3 SB5 . . . B 2 -0.061 9.22 28.487 1 54.75 ? CB3 SB5 800 A 1 HETATM 11 N NB4 SB5 . . . B 2 0.276 10.494 28.302 1 55.77 ? NB4 SB5 800 A 1 HETATM 12 C CB5 SB5 . . . B 2 1.21 11.067 29.136 1 57.26 ? CB5 SB5 800 A 1 HETATM 13 C CB6 SB5 . . . B 2 1.797 10.262 30.198 1 52.51 ? CB6 SB5 800 A 1 HETATM 14 N NB7 SB5 . . . B 2 -0.952 8.708 27.683 1 52.79 ? NB7 SB5 800 A 1 HETATM 15 N NC1 SB5 . . . B 2 0.666 13.454 28.386 1 60.99 ? NC1 SB5 800 A 1 HETATM 16 C CC2 SB5 . . . B 2 1.578 12.466 28.945 1 60.39 ? CC2 SB5 800 A 1 HETATM 17 C CC3 SB5 . . . B 2 2.946 13.094 29.027 1 55.75 ? CC3 SB5 800 A 1 HETATM 18 N NC4 SB5 . . . B 2 2.872 14.416 28.563 1 57.42 ? NC4 SB5 800 A 1 HETATM 19 C CC5 SB5 . . . B 2 1.556 14.509 28.23 1 61.78 ? CC5 SB5 800 A 1 HETATM 20 C CD1 SB5 . . . B 2 -0.775 13.379 27.876 1 56.89 ? CD1 SB5 800 A 1 HETATM 21 C CE1 SB5 . . . B 2 -1.09 14.37 26.722 1 55.76 ? CE1 SB5 800 A 1 HETATM 22 C CE2 SB5 . . . B 2 -2.056 13.922 25.62 1 58.24 ? CE2 SB5 800 A 1 HETATM 23 C CE3 SB5 . . . B 2 -0.568 14.023 25.321 1 56.03 ? CE3 SB5 800 A 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #