data_1BMM
#
_model_server_result.job_id            45o_N7l6HF2ExJ3THZZYPA 
_model_server_result.datetime_utc      '2025-04-18 16:15:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bmm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    1BMM 
#
_exptl.entry_id    1BMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              504.602 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-(R*,R*)]-4-[AMINOIMINOMETHYL)AMINO]-N-[[1-[3-HYDROXY -2-[(2-NAPHTHALENYLSULFONYL)AMINO]-1-OXOPROPYL]-2-PYRROLIDINYL] METHYL]BUTANAMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BMM 
_cell.length_a            108.17 
_cell.length_b            81.22 
_cell.length_c            46 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
#
_chem_comp.formula           'C23 H32 N6 O5 S' 
_chem_comp.formula_weight    504.602 
_chem_comp.id                BM2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-(R*,R*)]-4-[AMINOIMINOMETHYL)AMINO]-N-[[1-[3-HYDROXY -2-[(2-NAPHTHALENYLSULFONYL)AMINO]-1-OXOPROPYL]-2-PYRROLIDINYL] METHYL]BUTANAMIDE' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     BMS-186282 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BM2 doub 70 n y 
C1 C8 BM2 sing 71 n y 
C1 S11 BM2 sing 72 n n 
C2 C9 BM2 sing 73 n y 
C2 H2 BM2 sing 74 n n 
C3 C4 BM2 doub 75 n y 
C3 C9 BM2 sing 76 n y 
C3 H3 BM2 sing 77 n n 
C4 C5 BM2 sing 78 n y 
C4 H4 BM2 sing 79 n n 
C5 C6 BM2 doub 80 n y 
C5 H5 BM2 sing 81 n n 
C6 C10 BM2 sing 82 n y 
C6 H6 BM2 sing 83 n n 
C7 C8 BM2 doub 84 n y 
C7 C10 BM2 sing 85 n y 
C7 H7 BM2 sing 86 n n 
C8 H8 BM2 sing 87 n n 
C9 C10 BM2 doub 88 n y 
S11 O12 BM2 doub 89 n n 
S11 O13 BM2 doub 90 n n 
S11 N14 BM2 sing 91 n n 
N14 C15 BM2 sing 92 n n 
N14 HN4 BM2 sing 93 n n 
C15 C16 BM2 sing 94 n n 
C15 C18 BM2 sing 95 n n 
C15 H15 BM2 sing 96 n n 
C16 O17 BM2 sing 97 n n 
C16 H161 BM2 sing 98 n n 
C16 H162 BM2 sing 99 n n 
O17 HO7 BM2 sing 100 n n 
C18 O19 BM2 doub 101 n n 
C18 N20 BM2 sing 102 n n 
N20 C21 BM2 sing 103 n n 
N20 C24 BM2 sing 104 n n 
C21 C22 BM2 sing 105 n n 
C21 H211 BM2 sing 106 n n 
C21 H212 BM2 sing 107 n n 
C22 C23 BM2 sing 108 n n 
C22 H221 BM2 sing 109 n n 
C22 H222 BM2 sing 110 n n 
C23 C24 BM2 sing 111 n n 
C23 H231 BM2 sing 112 n n 
C23 H232 BM2 sing 113 n n 
C24 C25 BM2 sing 114 n n 
C24 H24 BM2 sing 115 n n 
C25 N26 BM2 sing 116 n n 
C25 H251 BM2 sing 117 n n 
C25 H252 BM2 sing 118 n n 
N26 C27 BM2 sing 119 n n 
N26 HN6 BM2 sing 120 n n 
C27 O28 BM2 doub 121 n n 
C27 C29 BM2 sing 122 n n 
C29 C30 BM2 sing 123 n n 
C29 H291 BM2 sing 124 n n 
C29 H292 BM2 sing 125 n n 
C30 C31 BM2 sing 126 n n 
C30 H301 BM2 sing 127 n n 
C30 H302 BM2 sing 128 n n 
C31 N32 BM2 sing 129 n n 
C31 H311 BM2 sing 130 n n 
C31 H312 BM2 sing 131 n n 
N32 C33 BM2 sing 132 n n 
N32 HN2 BM2 sing 133 n n 
C33 N34 BM2 sing 134 n n 
C33 N35 BM2 doub 135 n n 
N34 HN41 BM2 sing 136 n n 
N34 HN42 BM2 sing 137 n n 
N35 HN5 BM2 sing 138 n n 
#
_atom_sites.entry_id                     1BMM 
_atom_sites.fract_transf_matrix[1][1]    0.009245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012312 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BM2 H 1 1 1 BM2 BM2 . 
E 5 HOH L 1 603 603 HOH HOH . 
E 5 HOH L 2 623 623 HOH HOH . 
E 5 HOH L 3 624 624 HOH HOH . 
E 5 HOH L 4 625 625 HOH HOH . 
E 5 HOH L 5 641 641 HOH HOH . 
F 5 HOH H 1 601 601 HOH HOH . 
F 5 HOH H 2 602 602 HOH HOH . 
F 5 HOH H 3 604 604 HOH HOH . 
F 5 HOH H 4 605 605 HOH HOH . 
F 5 HOH H 5 606 606 HOH HOH . 
F 5 HOH H 6 607 607 HOH HOH . 
F 5 HOH H 7 608 608 HOH HOH . 
F 5 HOH H 8 609 609 HOH HOH . 
F 5 HOH H 9 610 610 HOH HOH . 
F 5 HOH H 10 611 611 HOH HOH . 
F 5 HOH H 11 612 612 HOH HOH . 
F 5 HOH H 12 613 613 HOH HOH . 
F 5 HOH H 13 614 614 HOH HOH . 
F 5 HOH H 14 615 615 HOH HOH . 
F 5 HOH H 15 616 616 HOH HOH . 
F 5 HOH H 16 617 617 HOH HOH . 
F 5 HOH H 17 618 618 HOH HOH . 
F 5 HOH H 18 619 619 HOH HOH . 
F 5 HOH H 19 620 620 HOH HOH . 
F 5 HOH H 20 621 621 HOH HOH . 
F 5 HOH H 21 622 622 HOH HOH . 
F 5 HOH H 22 626 626 HOH HOH . 
F 5 HOH H 23 627 627 HOH HOH . 
F 5 HOH H 24 628 628 HOH HOH . 
F 5 HOH H 25 629 629 HOH HOH . 
F 5 HOH H 26 630 630 HOH HOH . 
F 5 HOH H 27 631 631 HOH HOH . 
F 5 HOH H 28 632 632 HOH HOH . 
F 5 HOH H 29 633 633 HOH HOH . 
F 5 HOH H 30 634 634 HOH HOH . 
F 5 HOH H 31 635 635 HOH HOH . 
F 5 HOH H 32 636 636 HOH HOH . 
F 5 HOH H 33 637 637 HOH HOH . 
F 5 HOH H 34 638 638 HOH HOH . 
F 5 HOH H 35 639 639 HOH HOH . 
F 5 HOH H 36 640 640 HOH HOH . 
F 5 HOH H 37 642 642 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 BM2 . . . D 4 14.868 43.562 18.206 1 10.93 ? C27 BM2 1 H 1 
HETATM 2 O O28 BM2 . . . D 4 14.824 42.227 18.434 1 16.8 ? O28 BM2 1 H 1 
HETATM 3 C C29 BM2 . . . D 4 14.62 43.773 16.925 1 6.69 ? C29 BM2 1 H 1 
HETATM 4 C C30 BM2 . . . D 4 13.126 43.707 16.862 1 4.19 ? C30 BM2 1 H 1 
HETATM 5 C C31 BM2 . . . D 4 12.703 43.75 15.535 1 4.52 ? C31 BM2 1 H 1 
HETATM 6 N N32 BM2 . . . D 4 11.421 43.739 15.354 1 5.23 ? N32 BM2 1 H 1 
HETATM 7 C C33 BM2 . . . D 4 10.898 44.043 14.169 1 2.96 ? C33 BM2 1 H 1 
HETATM 8 N N35 BM2 . . . D 4 9.695 43.982 14.128 1 2 ? N35 BM2 1 H 1 
HETATM 9 N N34 BM2 . . . D 4 11.721 44.291 13.218 1 2 ? N34 BM2 1 H 1 
HETATM 10 N N26 BM2 . . . D 4 15.18 44.703 19.028 1 12.72 ? N26 BM2 1 H 1 
HETATM 11 C C25 BM2 . . . D 4 15.412 44.907 20.535 1 7.86 ? C25 BM2 1 H 1 
HETATM 12 C C24 BM2 . . . D 4 14.956 45.915 21.408 1 3.16 ? C24 BM2 1 H 1 
HETATM 13 N N20 BM2 . . . D 4 13.735 45.621 21.818 1 4.81 ? N20 BM2 1 H 1 
HETATM 14 C C21 BM2 . . . D 4 13.742 45.074 23.263 1 2 ? C21 BM2 1 H 1 
HETATM 15 C C22 BM2 . . . D 4 15.059 44.59 23.391 1 2.02 ? C22 BM2 1 H 1 
HETATM 16 C C23 BM2 . . . D 4 15.6 45.625 22.647 1 5.09 ? C23 BM2 1 H 1 
HETATM 17 N N14 BM2 . . . D 4 10.635 45.575 20.918 1 6.72 ? N14 BM2 1 H 1 
HETATM 18 C C15 BM2 . . . D 4 11.547 44.897 21.359 1 9.69 ? C15 BM2 1 H 1 
HETATM 19 C C18 BM2 . . . D 4 12.648 45.705 20.968 1 7.95 ? C18 BM2 1 H 1 
HETATM 20 O O19 BM2 . . . D 4 12.51 46.194 19.773 1 9.77 ? O19 BM2 1 H 1 
HETATM 21 C C16 BM2 . . . D 4 11.898 43.69 20.561 1 12.46 ? C16 BM2 1 H 1 
HETATM 22 O O17 BM2 . . . D 4 10.685 43.068 20.435 1 16.37 ? O17 BM2 1 H 1 
HETATM 23 S S11 BM2 . . . D 4 9.981 46.514 21.715 1 7.75 ? S11 BM2 1 H 1 
HETATM 24 O O13 BM2 . . . D 4 9.574 45.963 22.953 1 2 ? O13 BM2 1 H 1 
HETATM 25 O O12 BM2 . . . D 4 8.68 46.886 21.135 1 5.49 ? O12 BM2 1 H 1 
HETATM 26 C C2 BM2 . . . D 4 11.346 48.82 21.146 1 9.08 ? C2 BM2 1 H 1 
HETATM 27 C C1 BM2 . . . D 4 10.913 47.923 22.017 1 7.68 ? C1 BM2 1 H 1 
HETATM 28 C C8 BM2 . . . D 4 11.306 47.915 23.199 1 8.56 ? C8 BM2 1 H 1 
HETATM 29 C C7 BM2 . . . D 4 12.109 48.697 23.653 1 8.79 ? C7 BM2 1 H 1 
HETATM 30 C C6 BM2 . . . D 4 13.651 50.315 23.607 1 13.35 ? C6 BM2 1 H 1 
HETATM 31 C C5 BM2 . . . D 4 14.309 51.121 22.805 1 17.28 ? C5 BM2 1 H 1 
HETATM 32 C C4 BM2 . . . D 4 13.914 51.174 21.453 1 15.66 ? C4 BM2 1 H 1 
HETATM 33 C C3 BM2 . . . D 4 12.89 50.472 20.823 1 13.28 ? C3 BM2 1 H 1 
HETATM 34 C C9 BM2 . . . D 4 12.251 49.682 21.608 1 12.94 ? C9 BM2 1 H 1 
HETATM 35 C C10 BM2 . . . D 4 12.636 49.614 22.954 1 10.68 ? C10 BM2 1 H 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#