data_1BMN
#
_model_server_result.job_id            9SUlmKt-IOJxMlaln-s08w 
_model_server_result.datetime_utc      '2024-12-21 13:14:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bmn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    1BMN 
#
_exptl.entry_id    1BMN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              530.64 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[S-(R*,R*)]-1-(AMINOIMINOMETHYL)-N-[[1-[N-[(2-NAPHTHALENYLSULFONYL)-L-SERYL]-3-PYRROLIDINYL]METHYL]-3-PIPERIDENECARBOXA MIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BMN 
_cell.length_a            167.78 
_cell.length_b            49.04 
_cell.length_c            43.79 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BMN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C25 H34 N6 O5 S' 
_chem_comp.formula_weight    530.64 
_chem_comp.id                BM9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[S-(R*,R*)]-1-(AMINOIMINOMETHYL)-N-[[1-[N-[(2-NAPHTHALENYLSULFONYL)-L-SERYL]-3-PYRROLIDINYL]METHYL]-3-PIPERIDENECARBOXA MIDE' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     BMS-189090 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BM9 doub 70 n y 
C1 C8 BM9 sing 71 n y 
C1 S11 BM9 sing 72 n n 
C2 C9 BM9 sing 73 n y 
C2 H2 BM9 sing 74 n n 
C3 C4 BM9 doub 75 n y 
C3 C9 BM9 sing 76 n y 
C3 H3 BM9 sing 77 n n 
C4 C5 BM9 sing 78 n y 
C4 H4 BM9 sing 79 n n 
C5 C6 BM9 doub 80 n y 
C5 H5 BM9 sing 81 n n 
C6 C10 BM9 sing 82 n y 
C6 H6 BM9 sing 83 n n 
C7 C8 BM9 doub 84 n y 
C7 C10 BM9 sing 85 n y 
C7 H7 BM9 sing 86 n n 
C8 H8 BM9 sing 87 n n 
C9 C10 BM9 doub 88 n y 
S11 O12 BM9 doub 89 n n 
S11 O13 BM9 doub 90 n n 
S11 N14 BM9 sing 91 n n 
N14 C15 BM9 sing 92 n n 
N14 HN4 BM9 sing 93 n n 
C15 C16 BM9 sing 94 n n 
C15 C18 BM9 sing 95 n n 
C15 H15 BM9 sing 96 n n 
C16 O17 BM9 sing 97 n n 
C16 H161 BM9 sing 98 n n 
C16 H162 BM9 sing 99 n n 
O17 HO7 BM9 sing 100 n n 
C18 O19 BM9 doub 101 n n 
C18 N20 BM9 sing 102 n n 
N20 C21 BM9 sing 103 n n 
N20 C24 BM9 sing 104 n n 
C21 C22 BM9 sing 105 n n 
C21 H211 BM9 sing 106 n n 
C21 H212 BM9 sing 107 n n 
C22 C23 BM9 sing 108 n n 
C22 H221 BM9 sing 109 n n 
C22 H222 BM9 sing 110 n n 
C23 C24 BM9 sing 111 n n 
C23 H231 BM9 sing 112 n n 
C23 H232 BM9 sing 113 n n 
C24 C25 BM9 sing 114 n n 
C24 H24 BM9 sing 115 n n 
C25 N26 BM9 sing 116 n n 
C25 H251 BM9 sing 117 n n 
C25 H252 BM9 sing 118 n n 
N26 C27 BM9 sing 119 n n 
N26 HN6 BM9 sing 120 n n 
C27 O28 BM9 doub 121 n n 
C27 C29 BM9 sing 122 n n 
C29 C30 BM9 sing 123 n n 
C29 C34 BM9 sing 124 n n 
C29 H29 BM9 sing 125 n n 
C30 N31 BM9 sing 126 n n 
C30 H301 BM9 sing 127 n n 
C30 H302 BM9 sing 128 n n 
N31 C32 BM9 sing 129 n n 
N31 C35 BM9 sing 130 n n 
C32 C33 BM9 sing 131 n n 
C32 H321 BM9 sing 132 n n 
C32 H322 BM9 sing 133 n n 
C33 C34 BM9 sing 134 n n 
C33 H331 BM9 sing 135 n n 
C33 H332 BM9 sing 136 n n 
C34 H341 BM9 sing 137 n n 
C34 H342 BM9 sing 138 n n 
C35 N37 BM9 doub 139 n n 
C35 N36 BM9 sing 140 n n 
N37 HN7 BM9 sing 141 n n 
N36 HN61 BM9 sing 142 n n 
N36 HN62 BM9 sing 143 n n 
#
_atom_sites.entry_id                     1BMN 
_atom_sites.fract_transf_matrix[1][1]    0.00596 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020392 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022836 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BM9 H 1 1 1 BM9 BM9 . 
E 5 HOH L 1 613 613 HOH HOH . 
E 5 HOH L 2 626 626 HOH HOH . 
E 5 HOH L 3 638 638 HOH HOH . 
E 5 HOH L 4 639 639 HOH HOH . 
E 5 HOH L 5 644 644 HOH HOH . 
F 5 HOH H 1 601 601 HOH HOH . 
F 5 HOH H 2 602 602 HOH HOH . 
F 5 HOH H 3 603 603 HOH HOH . 
F 5 HOH H 4 604 604 HOH HOH . 
F 5 HOH H 5 605 605 HOH HOH . 
F 5 HOH H 6 606 606 HOH HOH . 
F 5 HOH H 7 607 607 HOH HOH . 
F 5 HOH H 8 608 608 HOH HOH . 
F 5 HOH H 9 609 609 HOH HOH . 
F 5 HOH H 10 610 610 HOH HOH . 
F 5 HOH H 11 611 611 HOH HOH . 
F 5 HOH H 12 612 612 HOH HOH . 
F 5 HOH H 13 614 614 HOH HOH . 
F 5 HOH H 14 615 615 HOH HOH . 
F 5 HOH H 15 616 616 HOH HOH . 
F 5 HOH H 16 617 617 HOH HOH . 
F 5 HOH H 17 618 618 HOH HOH . 
F 5 HOH H 18 619 619 HOH HOH . 
F 5 HOH H 19 620 620 HOH HOH . 
F 5 HOH H 20 621 621 HOH HOH . 
F 5 HOH H 21 622 622 HOH HOH . 
F 5 HOH H 22 623 623 HOH HOH . 
F 5 HOH H 23 625 625 HOH HOH . 
F 5 HOH H 24 627 627 HOH HOH . 
F 5 HOH H 25 628 628 HOH HOH . 
F 5 HOH H 26 629 629 HOH HOH . 
F 5 HOH H 27 630 630 HOH HOH . 
F 5 HOH H 28 631 631 HOH HOH . 
F 5 HOH H 29 632 632 HOH HOH . 
F 5 HOH H 30 633 633 HOH HOH . 
F 5 HOH H 31 634 634 HOH HOH . 
F 5 HOH H 32 635 635 HOH HOH . 
F 5 HOH H 33 636 636 HOH HOH . 
F 5 HOH H 34 637 637 HOH HOH . 
F 5 HOH H 35 640 640 HOH HOH . 
F 5 HOH H 36 641 641 HOH HOH . 
F 5 HOH H 37 642 642 HOH HOH . 
F 5 HOH H 38 643 643 HOH HOH . 
F 5 HOH H 39 645 645 HOH HOH . 
G 5 HOH I 1 624 624 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 BM9 . . . D 4 59.395 21.63 19.809 1 8.03 ? C27 BM9 1 H 1 
HETATM 2 O O28 BM9 . . . D 4 60.205 21.739 20.573 1 13.52 ? O28 BM9 1 H 1 
HETATM 3 C C29 BM9 . . . D 4 59.487 20.358 18.991 1 4.32 ? C29 BM9 1 H 1 
HETATM 4 C C30 BM9 . . . D 4 60.678 19.597 19.377 1 6.71 ? C30 BM9 1 H 1 
HETATM 5 N N31 BM9 . . . D 4 60.614 18.439 18.656 1 9.25 ? N31 BM9 1 H 1 
HETATM 6 C C32 BM9 . . . D 4 60.396 18.56 17.455 1 8.61 ? C32 BM9 1 H 1 
HETATM 7 C C33 BM9 . . . D 4 59.492 19.193 16.99 1 7.45 ? C33 BM9 1 H 1 
HETATM 8 C C34 BM9 . . . D 4 59.469 20.479 17.564 1 3.79 ? C34 BM9 1 H 1 
HETATM 9 C C35 BM9 . . . D 4 60.597 17.169 19.22 1 13.11 ? C35 BM9 1 H 1 
HETATM 10 N N37 BM9 . . . D 4 60.64 16.904 20.528 1 9.33 ? N37 BM9 1 H 1 
HETATM 11 N N36 BM9 . . . D 4 60.612 16.054 18.363 1 10.84 ? N36 BM9 1 H 1 
HETATM 12 N N26 BM9 . . . D 4 58.586 22.453 20.09 1 12.16 ? N26 BM9 1 H 1 
HETATM 13 C C25 BM9 . . . D 4 58.568 23.545 21.26 1 7.6 ? C25 BM9 1 H 1 
HETATM 14 C C24 BM9 . . . D 4 57.503 22.948 22.254 1 3.13 ? C24 BM9 1 H 1 
HETATM 15 N N20 BM9 . . . D 4 57.952 21.817 22.897 1 6.12 ? N20 BM9 1 H 1 
HETATM 16 C C21 BM9 . . . D 4 58.23 22.328 24.153 1 4.67 ? C21 BM9 1 H 1 
HETATM 17 C C22 BM9 . . . D 4 57.925 23.843 24.14 1 2 ? C22 BM9 1 H 1 
HETATM 18 C C23 BM9 . . . D 4 57.079 24.095 23.251 1 2 ? C23 BM9 1 H 1 
HETATM 19 N N14 BM9 . . . D 4 57.895 18.722 23.734 1 17.35 ? N14 BM9 1 H 1 
HETATM 20 C C15 BM9 . . . D 4 58.778 19.589 23.569 1 14.6 ? C15 BM9 1 H 1 
HETATM 21 C C18 BM9 . . . D 4 58.023 20.727 22.661 1 10.03 ? C18 BM9 1 H 1 
HETATM 22 O O19 BM9 . . . D 4 57.44 20.25 21.473 1 13.15 ? O19 BM9 1 H 1 
HETATM 23 C C16 BM9 . . . D 4 59.917 19.235 22.726 1 17.92 ? C16 BM9 1 H 1 
HETATM 24 O O17 BM9 . . . D 4 60.785 18.122 23.417 1 21.14 ? O17 BM9 1 H 1 
HETATM 25 S S11 BM9 . . . D 4 56.7 18.26 25.093 1 15.96 ? S11 BM9 1 H 1 
HETATM 26 O O13 BM9 . . . D 4 57.185 18.485 26.506 1 18.25 ? O13 BM9 1 H 1 
HETATM 27 O O12 BM9 . . . D 4 56.63 16.856 25.036 1 18.4 ? O12 BM9 1 H 1 
HETATM 28 C C2 BM9 . . . D 4 55.454 20.323 25.107 1 10.15 ? C2 BM9 1 H 1 
HETATM 29 C C1 BM9 . . . D 4 55.537 19.117 24.681 1 12.93 ? C1 BM9 1 H 1 
HETATM 30 C C8 BM9 . . . D 4 54.582 18.626 23.783 1 15.9 ? C8 BM9 1 H 1 
HETATM 31 C C7 BM9 . . . D 4 53.588 19.399 23.341 1 12.98 ? C7 BM9 1 H 1 
HETATM 32 C C6 BM9 . . . D 4 52.539 21.567 23.47 1 2.83 ? C6 BM9 1 H 1 
HETATM 33 C C5 BM9 . . . D 4 52.357 22.783 23.936 1 3.91 ? C5 BM9 1 H 1 
HETATM 34 C C4 BM9 . . . D 4 53.193 23.279 24.861 1 9.12 ? C4 BM9 1 H 1 
HETATM 35 C C3 BM9 . . . D 4 54.262 22.519 25.253 1 9.95 ? C3 BM9 1 H 1 
HETATM 36 C C9 BM9 . . . D 4 54.424 21.148 24.732 1 10.98 ? C9 BM9 1 H 1 
HETATM 37 C C10 BM9 . . . D 4 53.524 20.725 23.812 1 5.37 ? C10 BM9 1 H 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           1316 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           37 
#