data_1BMO # _model_server_result.job_id VtHR4g0V5cHNZcZI8a3WKA _model_server_result.datetime_utc '2025-04-27 05:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 1BMO # _exptl.entry_id 1BMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.38 _cell.angle_gamma 90 _cell.entry_id 1BMO _cell.length_a 70.77 _cell.length_b 56.35 _cell.length_c 111.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 401 NAG 2 n C NAG 2 C 2 NAG A 402 NAG 2 n D NAG 1 D 1 NAG B 401 NAG 2 n D NAG 2 D 2 NAG B 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 55 1_555 A SG CYS 13 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 7 A CYS 60 1_555 A SG CYS 23 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 25 A CYS 78 1_555 A SG CYS 60 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 31 A CYS 84 1_555 A SG CYS 53 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 42 A CYS 95 1_555 A SG CYS 79 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 85 A CYS 138 1_555 A SG CYS 195 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 A SG CYS 203 A CYS 256 1_555 A SG CYS 219 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf8 B SG CYS 2 B CYS 55 1_555 B SG CYS 13 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 7 B CYS 60 1_555 B SG CYS 23 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 25 B CYS 78 1_555 B SG CYS 60 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 31 B CYS 84 1_555 B SG CYS 53 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf12 B SG CYS 42 B CYS 95 1_555 B SG CYS 79 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 B SG CYS 85 B CYS 138 1_555 B SG CYS 195 B CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf14 B SG CYS 203 B CYS 256 1_555 B SG CYS 219 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A ND2 ASN 46 A ASN 99 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 B ND2 ASN 46 B ASN 99 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? metalc ? metalc1 A OD1 ASP 169 A ASP 222 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc2 A O PRO 172 A PRO 225 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc3 A OD1 ASP 174 A ASP 227 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc4 A O TYR 176 A TYR 229 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 A OE1 GLU 181 A GLU 234 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc6 A OE2 GLU 181 A GLU 234 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 A OD1 ASP 204 A ASP 257 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc8 A OD1 ASP 206 A ASP 259 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc9 A OD1 ASP 208 A ASP 261 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc10 A O TYR 210 A TYR 263 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc11 A OE1 GLU 215 A GLU 268 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc12 A OE2 GLU 215 A GLU 268 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc13 B OD1 ASP 169 B ASP 222 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc14 B O PRO 172 B PRO 225 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc15 B OD1 ASP 174 B ASP 227 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc16 B O TYR 176 B TYR 229 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc17 B OE1 GLU 181 B GLU 234 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc18 B OE2 GLU 181 B GLU 234 1_555 G CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc19 B OD1 ASP 204 B ASP 257 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc20 B OD1 ASP 206 B ASP 259 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc21 B OD1 ASP 208 B ASP 261 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc22 B O TYR 210 B TYR 263 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc23 B OE1 GLU 215 B GLU 268 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc24 B OE2 GLU 215 B GLU 268 1_555 H CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BMO _atom_sites.fract_transf_matrix[1][1] 0.01413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003623 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 301 301 CA CA . F 3 CA A 1 302 302 CA CA . G 3 CA B 1 301 301 CA CA . H 3 CA B 1 302 302 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 63.956 _atom_site.Cartn_y 14.994 _atom_site.Cartn_z 6.261 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #