data_1BN1 # _model_server_result.job_id Kuii6HCDSR-fpErnaeOxyw _model_server_result.datetime_utc '2024-11-24 15:15:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":555}' # _entry.id 1BN1 # _exptl.entry_id 1BN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.446 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIOPHENE-2,5-DISULFONIC ACID 2-AMIDE-5-(4-METHYL-BENZYLAMIDE)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.6 _cell.angle_gamma 90 _cell.entry_id 1BN1 _cell.length_a 42.7 _cell.length_b 41.7 _cell.length_c 73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 94 1_555 C ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 A NE2 HIS 95 A HIS 96 1_555 C ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 A ND1 HIS 118 A HIS 119 1_555 C ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 A O GLN 135 A GLN 137 1_555 B HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc5 A O GLU 203 A GLU 205 1_555 B HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.384 ? metalc ? metalc6 A SG CYS 204 A CYS 206 1_555 B HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc7 C ZN ZN . A ZN 262 1_555 D N21 AL5 . A AL5 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc8 C ZN ZN . A ZN 262 1_555 D S1 AL5 . A AL5 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc9 B HG HG . A HG 263 1_555 E O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc10 B HG HG . A HG 263 1_555 E O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.239 ? # _chem_comp.formula 'C12 H14 N2 O4 S3' _chem_comp.formula_weight 346.446 _chem_comp.id AL5 _chem_comp.mon_nstd_flag . _chem_comp.name 'THIOPHENE-2,5-DISULFONIC ACID 2-AMIDE-5-(4-METHYL-BENZYLAMIDE)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AL5917 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 S1 AL5 sing 1 n n C3 C4 AL5 doub 2 n y C3 S2 AL5 sing 3 n y C9 C10 AL5 sing 4 n n C9 N8 AL5 sing 5 n n C9 H91 AL5 sing 6 n n C9 H92 AL5 sing 7 n n C10 C11 AL5 doub 8 n y C10 C15 AL5 sing 9 n y C11 C12 AL5 sing 10 n y C11 H11 AL5 sing 11 n n C12 C13 AL5 doub 12 n y C12 H12 AL5 sing 13 n n C13 C14 AL5 sing 14 n y C13 C16 AL5 sing 15 n n C14 C15 AL5 doub 16 n y C14 H14 AL5 sing 17 n n C15 H15 AL5 sing 18 n n C16 H161 AL5 sing 19 n n C16 H162 AL5 sing 20 n n C16 H163 AL5 sing 21 n n O2A S1 AL5 doub 22 n n O1A S1 AL5 doub 23 n n N21 S1 AL5 sing 24 n n N21 HNL1 AL5 sing 25 n n N21 HNL2 AL5 sing 26 n n C4 C5 AL5 sing 27 n y C4 H4 AL5 sing 28 n n C5 C6 AL5 doub 29 n y C5 H5 AL5 sing 30 n n C6 S2 AL5 sing 31 n y C6 S7 AL5 sing 32 n n S7 O3B AL5 doub 33 n n S7 O4B AL5 doub 34 n n S7 N8 AL5 sing 35 n n N8 HN8 AL5 sing 36 n n # _atom_sites.entry_id 1BN1 _atom_sites.fract_transf_matrix[1][1] 0.023419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HG A 1 263 263 HG HG . C 3 ZN A 1 262 262 ZN ZN . D 4 AL5 A 1 555 555 AL5 AL5 . E 5 HOH A 1 266 266 HOH HOH . E 5 HOH A 2 267 267 HOH HOH . E 5 HOH A 3 268 268 HOH HOH . E 5 HOH A 4 269 269 HOH HOH . E 5 HOH A 5 270 270 HOH HOH . E 5 HOH A 6 271 271 HOH HOH . E 5 HOH A 7 272 272 HOH HOH . E 5 HOH A 8 273 273 HOH HOH . E 5 HOH A 9 274 274 HOH HOH . E 5 HOH A 10 275 275 HOH HOH . E 5 HOH A 11 276 276 HOH HOH . E 5 HOH A 12 277 277 HOH HOH . E 5 HOH A 13 278 278 HOH HOH . E 5 HOH A 14 279 279 HOH HOH . E 5 HOH A 15 280 280 HOH HOH . E 5 HOH A 16 281 281 HOH HOH . E 5 HOH A 17 282 282 HOH HOH . E 5 HOH A 18 283 283 HOH HOH . E 5 HOH A 19 284 284 HOH HOH . E 5 HOH A 20 285 285 HOH HOH . E 5 HOH A 21 286 286 HOH HOH . E 5 HOH A 22 287 287 HOH HOH . E 5 HOH A 23 288 288 HOH HOH . E 5 HOH A 24 289 289 HOH HOH . E 5 HOH A 25 290 290 HOH HOH . E 5 HOH A 26 291 291 HOH HOH . E 5 HOH A 27 292 292 HOH HOH . E 5 HOH A 28 293 293 HOH HOH . E 5 HOH A 29 294 294 HOH HOH . E 5 HOH A 30 295 295 HOH HOH . E 5 HOH A 31 297 297 HOH HOH . E 5 HOH A 32 298 298 HOH HOH . E 5 HOH A 33 299 299 HOH HOH . E 5 HOH A 34 300 300 HOH HOH . E 5 HOH A 35 301 301 HOH HOH . E 5 HOH A 36 302 302 HOH HOH . E 5 HOH A 37 303 303 HOH HOH . E 5 HOH A 38 304 304 HOH HOH . E 5 HOH A 39 305 305 HOH HOH . E 5 HOH A 40 306 306 HOH HOH . E 5 HOH A 41 307 307 HOH HOH . E 5 HOH A 42 308 308 HOH HOH . E 5 HOH A 43 309 309 HOH HOH . E 5 HOH A 44 310 310 HOH HOH . E 5 HOH A 45 311 311 HOH HOH . E 5 HOH A 46 313 313 HOH HOH . E 5 HOH A 47 314 314 HOH HOH . E 5 HOH A 48 315 315 HOH HOH . E 5 HOH A 49 316 316 HOH HOH . E 5 HOH A 50 317 317 HOH HOH . E 5 HOH A 51 318 318 HOH HOH . E 5 HOH A 52 319 319 HOH HOH . E 5 HOH A 53 320 320 HOH HOH . E 5 HOH A 54 321 321 HOH HOH . E 5 HOH A 55 322 322 HOH HOH . E 5 HOH A 56 323 323 HOH HOH . E 5 HOH A 57 324 324 HOH HOH . E 5 HOH A 58 325 325 HOH HOH . E 5 HOH A 59 326 326 HOH HOH . E 5 HOH A 60 327 327 HOH HOH . E 5 HOH A 61 328 328 HOH HOH . E 5 HOH A 62 329 329 HOH HOH . E 5 HOH A 63 330 330 HOH HOH . E 5 HOH A 64 331 331 HOH HOH . E 5 HOH A 65 333 333 HOH HOH . E 5 HOH A 66 336 336 HOH HOH . E 5 HOH A 67 337 337 HOH HOH . E 5 HOH A 68 340 340 HOH HOH . E 5 HOH A 69 341 341 HOH HOH . E 5 HOH A 70 342 342 HOH HOH . E 5 HOH A 71 344 344 HOH HOH . E 5 HOH A 72 345 345 HOH HOH . E 5 HOH A 73 348 348 HOH HOH . E 5 HOH A 74 350 350 HOH HOH . E 5 HOH A 75 351 351 HOH HOH . E 5 HOH A 76 354 354 HOH HOH . E 5 HOH A 77 355 355 HOH HOH . E 5 HOH A 78 357 357 HOH HOH . E 5 HOH A 79 358 358 HOH HOH . E 5 HOH A 80 359 359 HOH HOH . E 5 HOH A 81 360 360 HOH HOH . E 5 HOH A 82 361 361 HOH HOH . E 5 HOH A 83 362 362 HOH HOH . E 5 HOH A 84 363 363 HOH HOH . E 5 HOH A 85 365 365 HOH HOH . E 5 HOH A 86 366 366 HOH HOH . E 5 HOH A 87 367 367 HOH HOH . E 5 HOH A 88 368 368 HOH HOH . E 5 HOH A 89 370 370 HOH HOH . E 5 HOH A 90 372 372 HOH HOH . E 5 HOH A 91 373 373 HOH HOH . E 5 HOH A 92 375 375 HOH HOH . E 5 HOH A 93 376 376 HOH HOH . E 5 HOH A 94 379 379 HOH HOH . E 5 HOH A 95 380 380 HOH HOH . E 5 HOH A 96 381 381 HOH HOH . E 5 HOH A 97 382 382 HOH HOH . E 5 HOH A 98 384 384 HOH HOH . E 5 HOH A 99 385 385 HOH HOH . E 5 HOH A 100 386 386 HOH HOH . E 5 HOH A 101 387 387 HOH HOH . E 5 HOH A 102 389 389 HOH HOH . E 5 HOH A 103 390 390 HOH HOH . E 5 HOH A 104 392 392 HOH HOH . E 5 HOH A 105 393 393 HOH HOH . E 5 HOH A 106 395 395 HOH HOH . E 5 HOH A 107 398 398 HOH HOH . E 5 HOH A 108 402 402 HOH HOH . E 5 HOH A 109 403 403 HOH HOH . E 5 HOH A 110 404 404 HOH HOH . E 5 HOH A 111 405 405 HOH HOH . E 5 HOH A 112 407 407 HOH HOH . E 5 HOH A 113 410 410 HOH HOH . E 5 HOH A 114 417 417 HOH HOH . E 5 HOH A 115 418 418 HOH HOH . E 5 HOH A 116 419 419 HOH HOH . E 5 HOH A 117 420 420 HOH HOH . E 5 HOH A 118 423 423 HOH HOH . E 5 HOH A 119 424 424 HOH HOH . E 5 HOH A 120 426 426 HOH HOH . E 5 HOH A 121 436 436 HOH HOH . E 5 HOH A 122 437 437 HOH HOH . E 5 HOH A 123 438 438 HOH HOH . E 5 HOH A 124 441 441 HOH HOH . E 5 HOH A 125 443 443 HOH HOH . E 5 HOH A 126 451 451 HOH HOH . E 5 HOH A 127 458 458 HOH HOH . E 5 HOH A 128 459 459 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 AL5 . . . D 4 -5.262 1.917 15.868 1 27.71 ? C3 AL5 555 A 1 HETATM 2 C C9 AL5 . . . D 4 -2.533 6.016 13.996 1 44.18 ? C9 AL5 555 A 1 HETATM 3 C C10 AL5 . . . D 4 -2.073 7.458 14.006 1 47.03 ? C10 AL5 555 A 1 HETATM 4 C C11 AL5 . . . D 4 -2.059 8.237 12.836 1 48.43 ? C11 AL5 555 A 1 HETATM 5 C C12 AL5 . . . D 4 -1.63 9.564 12.892 1 50.07 ? C12 AL5 555 A 1 HETATM 6 C C13 AL5 . . . D 4 -1.209 10.118 14.112 1 49.93 ? C13 AL5 555 A 1 HETATM 7 C C14 AL5 . . . D 4 -1.224 9.34 15.266 1 49.35 ? C14 AL5 555 A 1 HETATM 8 C C15 AL5 . . . D 4 -1.655 8.018 15.212 1 48.13 ? C15 AL5 555 A 1 HETATM 9 C C16 AL5 . . . D 4 -0.706 11.575 14.204 0 51.35 ? C16 AL5 555 A 1 HETATM 10 O O2A AL5 . . . D 4 -7.342 0.898 16.816 1 23.49 ? O2A AL5 555 A 1 HETATM 11 O O1A AL5 . . . D 4 -5.452 0.89 18.209 1 22.78 ? O1A AL5 555 A 1 HETATM 12 N N21 AL5 . . . D 4 -5.426 -0.67 16.241 1 20.67 ? N21 AL5 555 A 1 HETATM 13 S S1 AL5 . . . D 4 -5.923 0.68 16.887 1 24.28 ? S1 AL5 555 A 1 HETATM 14 C C4 AL5 . . . D 4 -3.945 1.918 15.454 1 28.31 ? C4 AL5 555 A 1 HETATM 15 C C5 AL5 . . . D 4 -3.663 3.044 14.711 1 30.41 ? C5 AL5 555 A 1 HETATM 16 C C6 AL5 . . . D 4 -4.772 3.864 14.585 1 33.96 ? C6 AL5 555 A 1 HETATM 17 S S2 AL5 . . . D 4 -6.186 3.29 15.352 1 25.77 ? S2 AL5 555 A 1 HETATM 18 S S7 AL5 . . . D 4 -4.924 5.413 13.825 1 39.3 ? S7 AL5 555 A 1 HETATM 19 O O3B AL5 . . . D 4 -6.086 5.417 12.999 1 38.74 ? O3B AL5 555 A 1 HETATM 20 O O4B AL5 . . . D 4 -5.253 6.332 14.866 1 39.86 ? O4B AL5 555 A 1 HETATM 21 N N8 AL5 . . . D 4 -3.674 5.788 13.11 1 40.13 ? N8 AL5 555 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #