data_1BNL # _model_server_result.job_id ysZqO50NV7aMIbQzAbYLdQ _model_server_result.datetime_utc '2025-03-02 23:51:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":179}' # _entry.id 1BNL # _exptl.entry_id 1BNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.55 _cell.angle_gamma 90 _cell.entry_id 1BNL _cell.length_a 92.713 _cell.length_b 74.266 _cell.length_c 137.805 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 33 1_555 A SG CYS 173 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf2 A SG CYS 135 A CYS 135 1_555 A SG CYS 165 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 33 B CYS 33 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf4 B SG CYS 135 B CYS 135 1_555 B SG CYS 165 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 33 C CYS 33 1_555 C SG CYS 173 C CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf6 C SG CYS 135 C CYS 135 1_555 C SG CYS 165 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 33 D CYS 33 1_555 D SG CYS 173 D CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf8 D SG CYS 135 D CYS 135 1_555 D SG CYS 165 D CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A ND1 HIS 1 A HIS 1 1_555 E ZN ZN . A ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc2 A NE2 HIS 3 A HIS 3 1_555 E ZN ZN . A ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 A NE2 HIS 11 A HIS 11 1_555 E ZN ZN . A ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 A OD1 ASP 76 A ASP 76 1_555 E ZN ZN . A ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 B ND1 HIS 1 B HIS 1 1_555 F ZN ZN . B ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 B NE2 HIS 3 B HIS 3 1_555 F ZN ZN . B ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc7 B NE2 HIS 11 B HIS 11 1_555 F ZN ZN . B ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc8 B OD1 ASP 76 B ASP 76 1_555 F ZN ZN . B ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc9 C ND1 HIS 1 C HIS 1 1_555 G ZN ZN . C ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc10 C NE2 HIS 3 C HIS 3 1_555 G ZN ZN . C ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc11 C NE2 HIS 11 C HIS 11 1_555 G ZN ZN . C ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 C OD1 ASP 76 C ASP 76 1_555 G ZN ZN . C ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc13 D ND1 HIS 1 D HIS 1 1_555 H ZN ZN . D ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc14 D NE2 HIS 3 D HIS 3 1_555 H ZN ZN . D ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc15 D NE2 HIS 11 D HIS 11 1_555 H ZN ZN . D ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc16 D OD1 ASP 76 D ASP 76 1_555 H ZN ZN . D ZN 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BNL _atom_sites.fract_transf_matrix[1][1] 0.010786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 179 1 ZN ZN . F 2 ZN B 1 179 2 ZN ZN . G 2 ZN C 1 179 3 ZN ZN . H 2 ZN D 1 179 4 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 62.468 _atom_site.Cartn_y 11.236 _atom_site.Cartn_z 42.532 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 179 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #