data_1BNM # _model_server_result.job_id YkQpcyKxWHQ4WYDTciL0wQ _model_server_result.datetime_utc '2025-04-06 01:17:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":555}' # _entry.id 1BNM # _exptl.entry_id 1BNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.497 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-3,4-DIHYDRO-2-(3-METHOXYPHENYL)-4-METHYLAMINO-2H-THIENO[3,2-E]-1,2-THIAZINE-6-SULFONAMIDE-1,1-DIOXIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.6 _cell.angle_gamma 90 _cell.entry_id 1BNM _cell.length_a 42.7 _cell.length_b 41.7 _cell.length_c 73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 94 1_555 C ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc2 A NE2 HIS 95 A HIS 96 1_555 C ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 A ND1 HIS 118 A HIS 119 1_555 C ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 A O GLN 135 A GLN 137 1_555 B HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.268 ? metalc ? metalc5 A O GLU 203 A GLU 205 1_555 B HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.329 ? metalc ? metalc6 A SG CYS 204 A CYS 206 1_555 B HG HG . A HG 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc7 C ZN ZN . A ZN 262 1_555 D N21 AL8 . A AL8 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc8 C ZN ZN . A ZN 262 1_555 D S1 AL8 . A AL8 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc9 B HG HG . A HG 263 1_555 E O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? # _chem_comp.formula 'C14 H17 N3 O5 S3' _chem_comp.formula_weight 403.497 _chem_comp.id AL8 _chem_comp.mon_nstd_flag . _chem_comp.name (R)-3,4-DIHYDRO-2-(3-METHOXYPHENYL)-4-METHYLAMINO-2H-THIENO[3,2-E]-1,2-THIAZINE-6-SULFONAMIDE-1,1-DIOXIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AL7089A # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 S1 AL8 sing 1 n n C3 S2 AL8 sing 2 n y C3 C4 AL8 doub 3 n y C9 C10 AL8 sing 4 n n C9 N8 AL8 sing 5 n n C9 H91 AL8 sing 6 n n C9 H92 AL8 sing 7 n n C10 C5 AL8 sing 8 n n C10 N15 AL8 sing 9 n n C10 H10 AL8 sing 10 n n C16 N15 AL8 sing 11 n n C16 H161 AL8 sing 12 n n C16 H162 AL8 sing 13 n n C16 H163 AL8 sing 14 n n C19 C20 AL8 doub 15 n y C19 C18 AL8 sing 16 n y C19 H19 AL8 sing 17 n n C20 C21 AL8 sing 18 n y C20 H20 AL8 sing 19 n n C21 C22 AL8 doub 20 n y C21 O23 AL8 sing 21 n n C22 C17 AL8 sing 22 n y C22 H22 AL8 sing 23 n n C24 O23 AL8 sing 24 n n C24 H241 AL8 sing 25 n n C24 H242 AL8 sing 26 n n C24 H243 AL8 sing 27 n n N21 S1 AL8 sing 28 n n N21 HNL1 AL8 sing 29 n n N21 HNL2 AL8 sing 30 n n S1 O1A AL8 doub 31 n n S1 O2A AL8 doub 32 n n S2 C6 AL8 sing 33 n y C6 C5 AL8 doub 34 n y C6 S7 AL8 sing 35 n n C5 C4 AL8 sing 36 n y C4 H4 AL8 sing 37 n n N8 S7 AL8 sing 38 n n N8 C17 AL8 sing 39 n n S7 O3B AL8 doub 40 n n S7 O4B AL8 doub 41 n n N15 HNF AL8 sing 42 n n C17 C18 AL8 doub 43 n y C18 H18 AL8 sing 44 n n # _atom_sites.entry_id 1BNM _atom_sites.fract_transf_matrix[1][1] 0.023419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HG A 1 263 263 HG HG . C 3 ZN A 1 262 262 ZN ZN . D 4 AL8 A 1 555 555 AL8 AL8 . E 5 HOH A 1 266 266 HOH HOH . E 5 HOH A 2 267 267 HOH HOH . E 5 HOH A 3 268 268 HOH HOH . E 5 HOH A 4 269 269 HOH HOH . E 5 HOH A 5 270 270 HOH HOH . E 5 HOH A 6 273 273 HOH HOH . E 5 HOH A 7 275 275 HOH HOH . E 5 HOH A 8 278 278 HOH HOH . E 5 HOH A 9 282 282 HOH HOH . E 5 HOH A 10 283 283 HOH HOH . E 5 HOH A 11 285 285 HOH HOH . E 5 HOH A 12 287 287 HOH HOH . E 5 HOH A 13 288 288 HOH HOH . E 5 HOH A 14 289 289 HOH HOH . E 5 HOH A 15 292 292 HOH HOH . E 5 HOH A 16 295 295 HOH HOH . E 5 HOH A 17 298 298 HOH HOH . E 5 HOH A 18 299 299 HOH HOH . E 5 HOH A 19 300 300 HOH HOH . E 5 HOH A 20 301 301 HOH HOH . E 5 HOH A 21 303 303 HOH HOH . E 5 HOH A 22 304 304 HOH HOH . E 5 HOH A 23 306 306 HOH HOH . E 5 HOH A 24 309 309 HOH HOH . E 5 HOH A 25 310 310 HOH HOH . E 5 HOH A 26 311 311 HOH HOH . E 5 HOH A 27 313 313 HOH HOH . E 5 HOH A 28 316 316 HOH HOH . E 5 HOH A 29 319 319 HOH HOH . E 5 HOH A 30 320 320 HOH HOH . E 5 HOH A 31 323 323 HOH HOH . E 5 HOH A 32 324 324 HOH HOH . E 5 HOH A 33 325 325 HOH HOH . E 5 HOH A 34 326 326 HOH HOH . E 5 HOH A 35 327 327 HOH HOH . E 5 HOH A 36 328 328 HOH HOH . E 5 HOH A 37 330 330 HOH HOH . E 5 HOH A 38 331 331 HOH HOH . E 5 HOH A 39 334 334 HOH HOH . E 5 HOH A 40 340 340 HOH HOH . E 5 HOH A 41 341 341 HOH HOH . E 5 HOH A 42 348 348 HOH HOH . E 5 HOH A 43 354 354 HOH HOH . E 5 HOH A 44 355 355 HOH HOH . E 5 HOH A 45 357 357 HOH HOH . E 5 HOH A 46 358 358 HOH HOH . E 5 HOH A 47 363 363 HOH HOH . E 5 HOH A 48 366 366 HOH HOH . E 5 HOH A 49 367 367 HOH HOH . E 5 HOH A 50 368 368 HOH HOH . E 5 HOH A 51 370 370 HOH HOH . E 5 HOH A 52 376 376 HOH HOH . E 5 HOH A 53 379 379 HOH HOH . E 5 HOH A 54 381 381 HOH HOH . E 5 HOH A 55 404 404 HOH HOH . E 5 HOH A 56 405 405 HOH HOH . E 5 HOH A 57 412 412 HOH HOH . E 5 HOH A 58 419 419 HOH HOH . E 5 HOH A 59 426 426 HOH HOH . E 5 HOH A 60 459 459 HOH HOH . E 5 HOH A 61 475 475 HOH HOH . E 5 HOH A 62 476 476 HOH HOH . E 5 HOH A 63 477 477 HOH HOH . E 5 HOH A 64 479 479 HOH HOH . E 5 HOH A 65 480 480 HOH HOH . E 5 HOH A 66 481 481 HOH HOH . E 5 HOH A 67 482 482 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 AL8 . . . D 4 -5.4 1.944 15.924 1 14.53 ? C3 AL8 555 A 1 HETATM 2 C C9 AL8 . . . D 4 -2.463 4.867 13.95 1 29.19 ? C9 AL8 555 A 1 HETATM 3 C C10 AL8 . . . D 4 -2.893 3.423 13.681 1 24.01 ? C10 AL8 555 A 1 HETATM 4 C C16 AL8 . . . D 4 -1.741 2.876 12.054 1 19.25 ? C16 AL8 555 A 1 HETATM 5 C C19 AL8 . . . D 4 -2.785 9.035 12.151 1 33.25 ? C19 AL8 555 A 1 HETATM 6 C C20 AL8 . . . D 4 -2.057 9.617 13.177 1 36.24 ? C20 AL8 555 A 1 HETATM 7 C C21 AL8 . . . D 4 -1.838 8.891 14.363 1 36.12 ? C21 AL8 555 A 1 HETATM 8 C C22 AL8 . . . D 4 -2.329 7.62 14.537 1 29.7 ? C22 AL8 555 A 1 HETATM 9 C C24 AL8 . . . D 4 -0.613 10.688 15.267 1 49.66 ? C24 AL8 555 A 1 HETATM 10 N N21 AL8 . . . D 4 -5.538 -0.617 16.243 1 4.31 ? N21 AL8 555 A 1 HETATM 11 S S1 AL8 . . . D 4 -5.95 0.657 16.873 1 20.03 ? S1 AL8 555 A 1 HETATM 12 O O1A AL8 . . . D 4 -5.391 0.799 18.165 1 11.26 ? O1A AL8 555 A 1 HETATM 13 O O2A AL8 . . . D 4 -7.351 0.955 16.935 1 9.94 ? O2A AL8 555 A 1 HETATM 14 S S2 AL8 . . . D 4 -6.28 3.407 15.876 1 15.64 ? S2 AL8 555 A 1 HETATM 15 C C6 AL8 . . . D 4 -5.078 4.011 14.826 1 18.91 ? C6 AL8 555 A 1 HETATM 16 C C5 AL8 . . . D 4 -4.083 3.057 14.553 1 20.37 ? C5 AL8 555 A 1 HETATM 17 C C4 AL8 . . . D 4 -4.27 1.875 15.187 1 17.21 ? C4 AL8 555 A 1 HETATM 18 N N8 AL8 . . . D 4 -3.532 5.813 13.645 1 27.75 ? N8 AL8 555 A 1 HETATM 19 S S7 AL8 . . . D 4 -4.91 5.642 14.314 1 29.57 ? S7 AL8 555 A 1 HETATM 20 O O3B AL8 . . . D 4 -6.127 6.041 13.525 1 18.72 ? O3B AL8 555 A 1 HETATM 21 O O4B AL8 . . . D 4 -4.968 6.51 15.519 1 20.28 ? O4B AL8 555 A 1 HETATM 22 N N15 AL8 . . . D 4 -3.15 3.201 12.266 1 25.86 ? N15 AL8 555 A 1 HETATM 23 C C17 AL8 . . . D 4 -3.053 7.056 13.504 1 30.07 ? C17 AL8 555 A 1 HETATM 24 C C18 AL8 . . . D 4 -3.287 7.748 12.311 1 34.57 ? C18 AL8 555 A 1 HETATM 25 O O23 AL8 . . . D 4 -1.163 9.35 15.377 1 45.05 ? O23 AL8 555 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 687 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #