data_1BOZ # _model_server_result.job_id uFWLU_xG2Z-o9QKqh_cGDw _model_server_result.datetime_utc '2024-11-07 19:05:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1boz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1BOZ # _exptl.entry_id 1BOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.38 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N6-(2,5-DIMETHOXY-BENZYL)-N6-METHYL-PYRIDO[2,3-D]PYRIMIDINE-2,4,6-TRIAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BOZ _cell.length_a 86.259 _cell.length_b 86.259 _cell.length_c 77.637 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H20 N6 O2' _chem_comp.formula_weight 340.38 _chem_comp.id PRD _chem_comp.mon_nstd_flag . _chem_comp.name N6-(2,5-DIMETHOXY-BENZYL)-N6-METHYL-PYRIDO[2,3-D]PYRIMIDINE-2,4,6-TRIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4A C8A PRD doub 342 n y C4A C5B PRD sing 343 n y C4A C4B PRD sing 344 n y C8A N1' PRD sing 345 n y C8A N8' PRD sing 346 n y N1' C2B PRD doub 347 n y N8' C7B PRD doub 348 n y C7B C6B PRD sing 349 n y C7B H7' PRD sing 350 n n C6B N6' PRD sing 351 n n C6B C5B PRD doub 352 n y N6' C61 PRD sing 353 n n N6' C7' PRD sing 354 n n C61 HC61 PRD sing 355 n n C61 HC62 PRD sing 356 n n C61 HC63 PRD sing 357 n n C5B H5' PRD sing 358 n n C4B N4' PRD sing 359 n n C4B N3' PRD doub 360 n y N4' HN41 PRD sing 361 n n N4' HN42 PRD sing 362 n n N3' C2B PRD sing 363 n y C2B N2' PRD sing 364 n n N2' HN21 PRD sing 365 n n N2' HN22 PRD sing 366 n n C7' C1' PRD sing 367 n n C7' HC71 PRD sing 368 n n C7' HC72 PRD sing 369 n n C1' C2' PRD doub 370 n y C1' C6' PRD sing 371 n y C2' C3' PRD sing 372 n y C2' O2' PRD sing 373 n n C3' C4' PRD doub 374 n y C3' HC3' PRD sing 375 n n C4' C5' PRD sing 376 n y C4' HC4' PRD sing 377 n n C5' C6' PRD doub 378 n y C5' O5' PRD sing 379 n n C6' HC6' PRD sing 380 n n O2' C21 PRD sing 381 n n C21 HC21 PRD sing 382 n n C21 HC22 PRD sing 383 n n C21 HC23 PRD sing 384 n n O5' C51 PRD sing 385 n n C51 HC51 PRD sing 386 n n C51 HC52 PRD sing 387 n n C51 HC53 PRD sing 388 n n # _atom_sites.entry_id 1BOZ _atom_sites.fract_transf_matrix[1][1] 0.011593 _atom_sites.fract_transf_matrix[1][2] 0.006693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 187 187 NDP NDP . C 3 PRD A 1 400 400 PRD PRD . D 4 HOH A 1 188 188 HOH HOH . D 4 HOH A 2 189 189 HOH HOH . D 4 HOH A 3 190 190 HOH HOH . D 4 HOH A 4 191 191 HOH HOH . D 4 HOH A 5 192 192 HOH HOH . D 4 HOH A 6 193 193 HOH HOH . D 4 HOH A 7 194 194 HOH HOH . D 4 HOH A 8 195 195 HOH HOH . D 4 HOH A 9 196 196 HOH HOH . D 4 HOH A 10 197 197 HOH HOH . D 4 HOH A 11 198 198 HOH HOH . D 4 HOH A 12 199 199 HOH HOH . D 4 HOH A 13 200 200 HOH HOH . D 4 HOH A 14 201 201 HOH HOH . D 4 HOH A 15 202 202 HOH HOH . D 4 HOH A 16 203 203 HOH HOH . D 4 HOH A 17 204 204 HOH HOH . D 4 HOH A 18 205 205 HOH HOH . D 4 HOH A 19 206 206 HOH HOH . D 4 HOH A 20 207 207 HOH HOH . D 4 HOH A 21 208 208 HOH HOH . D 4 HOH A 22 209 209 HOH HOH . D 4 HOH A 23 210 210 HOH HOH . D 4 HOH A 24 211 211 HOH HOH . D 4 HOH A 25 212 212 HOH HOH . D 4 HOH A 26 213 213 HOH HOH . D 4 HOH A 27 214 214 HOH HOH . D 4 HOH A 28 215 215 HOH HOH . D 4 HOH A 29 216 216 HOH HOH . D 4 HOH A 30 217 217 HOH HOH . D 4 HOH A 31 218 218 HOH HOH . D 4 HOH A 32 219 219 HOH HOH . D 4 HOH A 33 220 220 HOH HOH . D 4 HOH A 34 221 221 HOH HOH . D 4 HOH A 35 222 222 HOH HOH . D 4 HOH A 36 223 223 HOH HOH . D 4 HOH A 37 224 224 HOH HOH . D 4 HOH A 38 225 225 HOH HOH . D 4 HOH A 39 226 226 HOH HOH . D 4 HOH A 40 227 227 HOH HOH . D 4 HOH A 41 228 228 HOH HOH . D 4 HOH A 42 229 229 HOH HOH . D 4 HOH A 43 230 230 HOH HOH . D 4 HOH A 44 231 231 HOH HOH . D 4 HOH A 45 232 232 HOH HOH . D 4 HOH A 46 233 233 HOH HOH . D 4 HOH A 47 234 234 HOH HOH . D 4 HOH A 48 235 235 HOH HOH . D 4 HOH A 49 236 236 HOH HOH . D 4 HOH A 50 237 237 HOH HOH . D 4 HOH A 51 238 238 HOH HOH . D 4 HOH A 52 239 239 HOH HOH . D 4 HOH A 53 240 240 HOH HOH . D 4 HOH A 54 241 241 HOH HOH . D 4 HOH A 55 242 242 HOH HOH . D 4 HOH A 56 243 243 HOH HOH . D 4 HOH A 57 244 244 HOH HOH . D 4 HOH A 58 245 245 HOH HOH . D 4 HOH A 59 246 246 HOH HOH . D 4 HOH A 60 247 247 HOH HOH . D 4 HOH A 61 248 248 HOH HOH . D 4 HOH A 62 249 249 HOH HOH . D 4 HOH A 63 250 250 HOH HOH . D 4 HOH A 64 251 251 HOH HOH . D 4 HOH A 65 252 252 HOH HOH . D 4 HOH A 66 253 253 HOH HOH . D 4 HOH A 67 254 254 HOH HOH . D 4 HOH A 68 255 255 HOH HOH . D 4 HOH A 69 256 256 HOH HOH . D 4 HOH A 70 257 257 HOH HOH . D 4 HOH A 71 258 258 HOH HOH . D 4 HOH A 72 259 259 HOH HOH . D 4 HOH A 73 260 260 HOH HOH . D 4 HOH A 74 261 261 HOH HOH . D 4 HOH A 75 262 262 HOH HOH . D 4 HOH A 76 263 263 HOH HOH . D 4 HOH A 77 264 264 HOH HOH . D 4 HOH A 78 265 265 HOH HOH . D 4 HOH A 79 266 266 HOH HOH . D 4 HOH A 80 267 267 HOH HOH . D 4 HOH A 81 268 268 HOH HOH . D 4 HOH A 82 269 269 HOH HOH . D 4 HOH A 83 270 270 HOH HOH . D 4 HOH A 84 271 271 HOH HOH . D 4 HOH A 85 272 272 HOH HOH . D 4 HOH A 86 273 273 HOH HOH . D 4 HOH A 87 274 274 HOH HOH . D 4 HOH A 88 275 275 HOH HOH . D 4 HOH A 89 276 276 HOH HOH . D 4 HOH A 90 277 277 HOH HOH . D 4 HOH A 91 278 278 HOH HOH . D 4 HOH A 92 279 279 HOH HOH . D 4 HOH A 93 280 280 HOH HOH . D 4 HOH A 94 281 281 HOH HOH . D 4 HOH A 95 282 282 HOH HOH . D 4 HOH A 96 283 283 HOH HOH . D 4 HOH A 97 284 284 HOH HOH . D 4 HOH A 98 285 285 HOH HOH . D 4 HOH A 99 286 286 HOH HOH . D 4 HOH A 100 287 287 HOH HOH . D 4 HOH A 101 288 288 HOH HOH . D 4 HOH A 102 289 289 HOH HOH . D 4 HOH A 103 290 290 HOH HOH . D 4 HOH A 104 291 291 HOH HOH . D 4 HOH A 105 292 292 HOH HOH . D 4 HOH A 106 293 293 HOH HOH . D 4 HOH A 107 294 294 HOH HOH . D 4 HOH A 108 295 295 HOH HOH . D 4 HOH A 109 296 296 HOH HOH . D 4 HOH A 110 297 297 HOH HOH . D 4 HOH A 111 298 298 HOH HOH . D 4 HOH A 112 299 299 HOH HOH . D 4 HOH A 113 300 300 HOH HOH . D 4 HOH A 114 301 301 HOH HOH . D 4 HOH A 115 302 302 HOH HOH . D 4 HOH A 116 303 303 HOH HOH . D 4 HOH A 117 304 304 HOH HOH . D 4 HOH A 118 305 305 HOH HOH . D 4 HOH A 119 306 306 HOH HOH . D 4 HOH A 120 307 307 HOH HOH . D 4 HOH A 121 308 308 HOH HOH . D 4 HOH A 122 309 309 HOH HOH . D 4 HOH A 123 310 310 HOH HOH . D 4 HOH A 124 311 311 HOH HOH . D 4 HOH A 125 312 312 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4A PRD . . . C 3 28.328 13.358 -2.09 1 25.44 ? C4A PRD 400 A 1 HETATM 2 C C8A PRD . . . C 3 29.19 13.505 -3.202 1 25.64 ? C8A PRD 400 A 1 HETATM 3 N N1' PRD . . . C 3 28.664 13.121 -4.511 1 23.56 ? N1' PRD 400 A 1 HETATM 4 N N8' PRD . . . C 3 30.487 13.986 -3.094 1 27.41 ? N8' PRD 400 A 1 HETATM 5 C C7B PRD . . . C 3 30.919 14.319 -1.836 1 29.57 ? C7B PRD 400 A 1 HETATM 6 C C6B PRD . . . C 3 30.073 14.192 -0.679 1 31.49 ? C6B PRD 400 A 1 HETATM 7 N N6' PRD . . . C 3 30.319 14.489 0.731 1 36.11 ? N6' PRD 400 A 1 HETATM 8 C C61 PRD . . . C 3 29.146 14.944 1.494 1 33.87 ? C61 PRD 400 A 1 HETATM 9 C C5B PRD . . . C 3 28.766 13.723 -0.852 1 27.96 ? C5B PRD 400 A 1 HETATM 10 C C4B PRD . . . C 3 27.056 12.869 -2.309 1 23.44 ? C4B PRD 400 A 1 HETATM 11 N N4' PRD . . . C 3 26.098 12.693 -1.365 1 22.44 ? N4' PRD 400 A 1 HETATM 12 N N3' PRD . . . C 3 26.695 12.586 -3.588 1 22.7 ? N3' PRD 400 A 1 HETATM 13 C C2B PRD . . . C 3 27.445 12.687 -4.713 1 22.53 ? C2B PRD 400 A 1 HETATM 14 N N2' PRD . . . C 3 27.04 12.336 -5.975 1 22.83 ? N2' PRD 400 A 1 HETATM 15 C C7' PRD . . . C 3 31.496 14.843 1.262 1 37.57 ? C7' PRD 400 A 1 HETATM 16 C C1' PRD . . . C 3 32.398 15.968 0.696 1 39.17 ? C1' PRD 400 A 1 HETATM 17 C C2' PRD . . . C 3 33.706 15.633 0.54 1 40.58 ? C2' PRD 400 A 1 HETATM 18 C C3' PRD . . . C 3 34.681 16.522 0.041 1 40.72 ? C3' PRD 400 A 1 HETATM 19 C C4' PRD . . . C 3 34.245 17.82 -0.283 1 40.86 ? C4' PRD 400 A 1 HETATM 20 C C5' PRD . . . C 3 32.88 18.155 -0.11 1 40.44 ? C5' PRD 400 A 1 HETATM 21 C C6' PRD . . . C 3 31.953 17.299 0.373 1 39.89 ? C6' PRD 400 A 1 HETATM 22 O O2' PRD . . . C 3 34.133 14.306 0.861 1 41.21 ? O2' PRD 400 A 1 HETATM 23 C C21 PRD . . . C 3 35.299 14.489 1.779 1 41.74 ? C21 PRD 400 A 1 HETATM 24 O O5' PRD . . . C 3 32.728 19.512 -0.477 1 41.72 ? O5' PRD 400 A 1 HETATM 25 C C51 PRD . . . C 3 31.504 20.035 0.127 1 41.18 ? C51 PRD 400 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #