data_1BP1 # _model_server_result.job_id H_f6j12fRlfqACG9U4qQsQ _model_server_result.datetime_utc '2024-11-27 03:13:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":777}' # _entry.id 1BP1 # _exptl.entry_id 1BP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 790.145 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.6 _cell.angle_gamma 90 _cell.entry_id 1BP1 _cell.length_a 185.6 _cell.length_b 33 _cell.length_c 85.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 135 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 175 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 175 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 237 n n P O14 PC1 doub 238 n n P O13 PC1 sing 239 n n P O11 PC1 sing 240 n n O13 C11 PC1 sing 241 n n C11 C12 PC1 sing 242 n n C11 H111 PC1 sing 243 n n C11 H112 PC1 sing 244 n n C12 N PC1 sing 245 n n C12 H121 PC1 sing 246 n n C12 H122 PC1 sing 247 n n N C13 PC1 sing 248 n n N C14 PC1 sing 249 n n N C15 PC1 sing 250 n n C13 H131 PC1 sing 251 n n C13 H132 PC1 sing 252 n n C13 H133 PC1 sing 253 n n C14 H141 PC1 sing 254 n n C14 H142 PC1 sing 255 n n C14 H143 PC1 sing 256 n n C15 H151 PC1 sing 257 n n C15 H152 PC1 sing 258 n n C15 H153 PC1 sing 259 n n O11 C1 PC1 sing 260 n n C1 C2 PC1 sing 261 n n C1 H11 PC1 sing 262 n n C1 H12 PC1 sing 263 n n C2 O21 PC1 sing 264 n n C2 C3 PC1 sing 265 n n C2 H2 PC1 sing 266 n n O21 C21 PC1 sing 267 n n C21 O22 PC1 doub 268 n n C21 C22 PC1 sing 269 n n C22 C23 PC1 sing 270 n n C22 H221 PC1 sing 271 n n C22 H222 PC1 sing 272 n n C23 C24 PC1 sing 273 n n C23 H231 PC1 sing 274 n n C23 H232 PC1 sing 275 n n C24 C25 PC1 sing 276 n n C24 H241 PC1 sing 277 n n C24 H242 PC1 sing 278 n n C25 C26 PC1 sing 279 n n C25 H251 PC1 sing 280 n n C25 H252 PC1 sing 281 n n C26 C27 PC1 sing 282 n n C26 H261 PC1 sing 283 n n C26 H262 PC1 sing 284 n n C27 C28 PC1 sing 285 n n C27 H271 PC1 sing 286 n n C27 H272 PC1 sing 287 n n C28 C29 PC1 sing 288 n n C28 H281 PC1 sing 289 n n C28 H282 PC1 sing 290 n n C29 C2A PC1 sing 291 n n C29 H291 PC1 sing 292 n n C29 H292 PC1 sing 293 n n C2A C2B PC1 sing 294 n n C2A H2A1 PC1 sing 295 n n C2A H2A2 PC1 sing 296 n n C2B C2C PC1 sing 297 n n C2B H2B1 PC1 sing 298 n n C2B H2B2 PC1 sing 299 n n C2C C2D PC1 sing 300 n n C2C H2C1 PC1 sing 301 n n C2C H2C2 PC1 sing 302 n n C2D C2E PC1 sing 303 n n C2D H2D1 PC1 sing 304 n n C2D H2D2 PC1 sing 305 n n C2E C2F PC1 sing 306 n n C2E H2E1 PC1 sing 307 n n C2E H2E2 PC1 sing 308 n n C2F C2G PC1 sing 309 n n C2F H2F1 PC1 sing 310 n n C2F H2F2 PC1 sing 311 n n C2G C2H PC1 sing 312 n n C2G H2G1 PC1 sing 313 n n C2G H2G2 PC1 sing 314 n n C2H C2I PC1 sing 315 n n C2H H2H1 PC1 sing 316 n n C2H H2H2 PC1 sing 317 n n C2I H2I1 PC1 sing 318 n n C2I H2I2 PC1 sing 319 n n C2I H2I3 PC1 sing 320 n n C3 O31 PC1 sing 321 n n C3 H31 PC1 sing 322 n n C3 H32 PC1 sing 323 n n O31 C31 PC1 sing 324 n n C31 O32 PC1 doub 325 n n C31 C32 PC1 sing 326 n n C32 C33 PC1 sing 327 n n C32 H321 PC1 sing 328 n n C32 H322 PC1 sing 329 n n C33 C34 PC1 sing 330 n n C33 H331 PC1 sing 331 n n C33 H332 PC1 sing 332 n n C34 C35 PC1 sing 333 n n C34 H341 PC1 sing 334 n n C34 H342 PC1 sing 335 n n C35 C36 PC1 sing 336 n n C35 H351 PC1 sing 337 n n C35 H352 PC1 sing 338 n n C36 C37 PC1 sing 339 n n C36 H361 PC1 sing 340 n n C36 H362 PC1 sing 341 n n C37 C38 PC1 sing 342 n n C37 H371 PC1 sing 343 n n C37 H372 PC1 sing 344 n n C38 C39 PC1 sing 345 n n C38 H381 PC1 sing 346 n n C38 H382 PC1 sing 347 n n C39 C3A PC1 sing 348 n n C39 H391 PC1 sing 349 n n C39 H392 PC1 sing 350 n n C3A C3B PC1 sing 351 n n C3A H3A1 PC1 sing 352 n n C3A H3A2 PC1 sing 353 n n C3B C3C PC1 sing 354 n n C3B H3B1 PC1 sing 355 n n C3B H3B2 PC1 sing 356 n n C3C C3D PC1 sing 357 n n C3C H3C1 PC1 sing 358 n n C3C H3C2 PC1 sing 359 n n C3D C3E PC1 sing 360 n n C3D H3D1 PC1 sing 361 n n C3D H3D2 PC1 sing 362 n n C3E C3F PC1 sing 363 n n C3E H3E1 PC1 sing 364 n n C3E H3E2 PC1 sing 365 n n C3F C3G PC1 sing 366 n n C3F H3F1 PC1 sing 367 n n C3F H3F2 PC1 sing 368 n n C3G C3H PC1 sing 369 n n C3G H3G1 PC1 sing 370 n n C3G H3G2 PC1 sing 371 n n C3H C3I PC1 sing 372 n n C3H H3H1 PC1 sing 373 n n C3H H3H2 PC1 sing 374 n n C3I H3I1 PC1 sing 375 n n C3I H3I2 PC1 sing 376 n n C3I H3I3 PC1 sing 377 n n # _atom_sites.entry_id 1BP1 _atom_sites.fract_transf_matrix[1][1] 0.005388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PC1 A 1 777 777 PC1 PC . C 2 PC1 A 1 778 778 PC1 PC . D 3 HOH A 1 901 901 HOH HOH . D 3 HOH A 2 902 902 HOH HOH . D 3 HOH A 3 903 903 HOH HOH . D 3 HOH A 4 904 904 HOH HOH . D 3 HOH A 5 905 905 HOH HOH . D 3 HOH A 6 906 906 HOH HOH . D 3 HOH A 7 907 907 HOH HOH . D 3 HOH A 8 908 908 HOH HOH . D 3 HOH A 9 909 909 HOH HOH . D 3 HOH A 10 910 910 HOH HOH . D 3 HOH A 11 911 911 HOH HOH . D 3 HOH A 12 912 912 HOH HOH . D 3 HOH A 13 913 913 HOH HOH . D 3 HOH A 14 914 914 HOH HOH . D 3 HOH A 15 915 915 HOH HOH . D 3 HOH A 16 916 916 HOH HOH . D 3 HOH A 17 917 917 HOH HOH . D 3 HOH A 18 918 918 HOH HOH . D 3 HOH A 19 919 919 HOH HOH . D 3 HOH A 20 920 920 HOH HOH . D 3 HOH A 21 921 921 HOH HOH . D 3 HOH A 22 922 922 HOH HOH . D 3 HOH A 23 923 923 HOH HOH . D 3 HOH A 24 924 924 HOH HOH . D 3 HOH A 25 925 925 HOH HOH . D 3 HOH A 26 926 926 HOH HOH . D 3 HOH A 27 927 927 HOH HOH . D 3 HOH A 28 928 928 HOH HOH . D 3 HOH A 29 929 929 HOH HOH . D 3 HOH A 30 930 930 HOH HOH . D 3 HOH A 31 931 931 HOH HOH . D 3 HOH A 32 932 932 HOH HOH . D 3 HOH A 33 933 933 HOH HOH . D 3 HOH A 34 934 934 HOH HOH . D 3 HOH A 35 935 935 HOH HOH . D 3 HOH A 36 936 936 HOH HOH . D 3 HOH A 37 937 937 HOH HOH . D 3 HOH A 38 938 938 HOH HOH . D 3 HOH A 39 939 939 HOH HOH . D 3 HOH A 40 940 940 HOH HOH . D 3 HOH A 41 941 941 HOH HOH . D 3 HOH A 42 942 942 HOH HOH . D 3 HOH A 43 943 943 HOH HOH . D 3 HOH A 44 944 944 HOH HOH . D 3 HOH A 45 945 945 HOH HOH . D 3 HOH A 46 946 946 HOH HOH . D 3 HOH A 47 947 947 HOH HOH . D 3 HOH A 48 948 948 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . B 2 121.661 35.196 20.857 1 89.42 ? O12 PC1 777 A 1 HETATM 2 P P PC1 . . . B 2 121.516 33.779 21.409 1 89 ? P PC1 777 A 1 HETATM 3 O O14 PC1 . . . B 2 120.059 33.339 21.28 1 90.46 ? O14 PC1 777 A 1 HETATM 4 O O13 PC1 . . . B 2 121.916 33.769 22.889 1 91.71 ? O13 PC1 777 A 1 HETATM 5 C C11 PC1 . . . B 2 123.302 33.354 23.035 1 94.69 ? C11 PC1 777 A 1 HETATM 6 C C12 PC1 . . . B 2 124.151 34.553 23.445 1 98.1 ? C12 PC1 777 A 1 HETATM 7 N N PC1 . . . B 2 125.571 34.153 23.607 1 99.82 ? N PC1 777 A 1 HETATM 8 C C13 PC1 . . . B 2 125.683 33.126 24.652 1 99.68 ? C13 PC1 777 A 1 HETATM 9 C C14 PC1 . . . B 2 126.361 35.328 24.003 1 100 ? C14 PC1 777 A 1 HETATM 10 C C15 PC1 . . . B 2 126.086 33.627 22.335 1 100 ? C15 PC1 777 A 1 HETATM 11 O O11 PC1 . . . B 2 122.419 32.815 20.622 1 84.15 ? O11 PC1 777 A 1 HETATM 12 C C1 PC1 . . . B 2 121.817 32.468 19.343 1 72.53 ? C1 PC1 777 A 1 HETATM 13 C C2 PC1 . . . B 2 121.094 31.121 19.465 1 63.82 ? C2 PC1 777 A 1 HETATM 14 O O21 PC1 . . . B 2 122.068 30.02 19.35 1 61.36 ? O21 PC1 777 A 1 HETATM 15 C C21 PC1 . . . B 2 122.736 29.776 18.047 1 54.84 ? C21 PC1 777 A 1 HETATM 16 O O22 PC1 . . . B 2 123.576 28.862 17.906 1 56.48 ? O22 PC1 777 A 1 HETATM 17 C C22 PC1 . . . B 2 122.337 30.654 16.869 1 51.64 ? C22 PC1 777 A 1 HETATM 18 C C23 PC1 . . . B 2 122.254 29.878 15.549 1 47.76 ? C23 PC1 777 A 1 HETATM 19 C C24 PC1 . . . B 2 123.59 29.237 15.169 1 42.03 ? C24 PC1 777 A 1 HETATM 20 C C25 PC1 . . . B 2 123.429 28.173 14.085 1 39.41 ? C25 PC1 777 A 1 HETATM 21 C C26 PC1 . . . B 2 122.582 28.674 12.916 1 36.18 ? C26 PC1 777 A 1 HETATM 22 C C27 PC1 . . . B 2 121.581 27.622 12.463 1 33.16 ? C27 PC1 777 A 1 HETATM 23 C C28 PC1 . . . B 2 120.679 28.158 11.377 1 31.4 ? C28 PC1 777 A 1 HETATM 24 C C29 PC1 . . . B 2 119.61 29.062 11.951 1 36.47 ? C29 PC1 777 A 1 HETATM 25 C C2A PC1 . . . B 2 118.543 28.263 12.682 1 40.19 ? C2A PC1 777 A 1 HETATM 26 C C2B PC1 . . . B 2 117.191 28.383 12.004 1 39.41 ? C2B PC1 777 A 1 HETATM 27 C C2C PC1 . . . B 2 116.468 27.05 11.956 1 41.86 ? C2C PC1 777 A 1 HETATM 28 C C2D PC1 . . . B 2 115.409 26.958 13.041 1 43.49 ? C2D PC1 777 A 1 HETATM 29 C C2E PC1 . . . B 2 114.326 25.951 12.669 1 46.22 ? C2E PC1 777 A 1 HETATM 30 C C2F PC1 . . . B 2 113.126 26.048 13.604 1 47.77 ? C2F PC1 777 A 1 HETATM 31 C C2G PC1 . . . B 2 112.271 24.786 13.561 1 48.67 ? C2G PC1 777 A 1 HETATM 32 C C2H PC1 . . . B 2 111.948 24.277 14.964 1 48.62 ? C2H PC1 777 A 1 HETATM 33 C C2I PC1 . . . B 2 110.492 24.449 15.368 1 45.72 ? C2I PC1 777 A 1 HETATM 34 C C3 PC1 . . . B 2 119.917 31.017 18.492 1 59.16 ? C3 PC1 777 A 1 HETATM 35 O O31 PC1 . . . B 2 119.731 32.307 17.866 1 53.04 ? O31 PC1 777 A 1 HETATM 36 C C31 PC1 . . . B 2 118.509 32.389 17.081 1 49.62 ? C31 PC1 777 A 1 HETATM 37 O O32 PC1 . . . B 2 118.194 33.427 16.467 1 52.98 ? O32 PC1 777 A 1 HETATM 38 C C32 PC1 . . . B 2 117.647 31.121 17.072 1 45.91 ? C32 PC1 777 A 1 HETATM 39 C C33 PC1 . . . B 2 116.542 31.091 16.014 1 42.05 ? C33 PC1 777 A 1 HETATM 40 C C34 PC1 . . . B 2 115.753 32.392 15.973 1 37.88 ? C34 PC1 777 A 1 HETATM 41 C C35 PC1 . . . B 2 114.269 32.149 16.004 1 39.34 ? C35 PC1 777 A 1 HETATM 42 C C36 PC1 . . . B 2 113.573 32.877 14.874 1 39.38 ? C36 PC1 777 A 1 HETATM 43 C C37 PC1 . . . B 2 112.066 32.688 14.951 1 43.09 ? C37 PC1 777 A 1 HETATM 44 C C38 PC1 . . . B 2 111.446 32.535 13.566 1 45.42 ? C38 PC1 777 A 1 HETATM 45 C C39 PC1 . . . B 2 111.5 31.093 13.082 1 47.16 ? C39 PC1 777 A 1 HETATM 46 C C3A PC1 . . . B 2 110.158 30.413 13.236 1 46.62 ? C3A PC1 777 A 1 HETATM 47 C C3B PC1 . . . B 2 109.917 30.004 14.673 1 46.65 ? C3B PC1 777 A 1 HETATM 48 C C3C PC1 . . . B 2 108.444 29.836 14.942 1 46.97 ? C3C PC1 777 A 1 HETATM 49 C C3D PC1 . . . B 2 107.922 30.916 15.868 1 47.3 ? C3D PC1 777 A 1 HETATM 50 C C3E PC1 . . . B 2 106.409 30.835 16.001 1 50.05 ? C3E PC1 777 A 1 HETATM 51 C C3F PC1 . . . B 2 105.996 29.898 17.121 1 50.59 ? C3F PC1 777 A 1 HETATM 52 C C3G PC1 . . . B 2 105.783 28.49 16.612 1 53.56 ? C3G PC1 777 A 1 HETATM 53 C C3H PC1 . . . B 2 106.972 27.593 16.941 1 56.03 ? C3H PC1 777 A 1 HETATM 54 C C3I PC1 . . . B 2 107.348 26.625 15.831 1 55.75 ? C3I PC1 777 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 54 #