data_1BP2
#
_model_server_result.job_id            hOZZBSWeEx1Zx8VLuCinyw 
_model_server_result.datetime_utc      '2024-11-09 02:03:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bp2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":125}' 
#
_entry.id    1BP2 
#
_exptl.entry_id    1BP2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BP2 
_cell.length_a            47.07 
_cell.length_b            64.45 
_cell.length_c            38.15 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BP2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf7 A SG CYS 84 A CYS 84 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc1 A O TYR 28 A TYR 28 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc2 A O GLY 30 A GLY 30 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc3 A O GLY 32 A GLY 32 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 A OD1 ASP 49 A ASP 49 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc5 A OD2 ASP 49 A ASP 49 1_555 B CA CA . A CA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc6 B CA CA . A CA 124 1_555 E O HOH . A HOH 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc7 B CA CA . A CA 124 1_555 E O HOH . A HOH 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     1BP2 
_atom_sites.fract_transf_matrix[1][1]    0.021245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015516 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 124 1 CA CA . 
C 3 MPD A 1 125 2 MPD MPD . 
D 3 MPD A 1 126 3 MPD MPD . 
E 4 HOH A 1 127 4 HOH HOH . 
E 4 HOH A 2 128 5 HOH HOH . 
E 4 HOH A 3 129 6 HOH HOH . 
E 4 HOH A 4 130 7 HOH HOH . 
E 4 HOH A 5 131 8 HOH HOH . 
E 4 HOH A 6 132 9 HOH HOH . 
E 4 HOH A 7 133 10 HOH HOH . 
E 4 HOH A 8 134 11 HOH HOH . 
E 4 HOH A 9 135 12 HOH HOH . 
E 4 HOH A 10 136 13 HOH HOH . 
E 4 HOH A 11 137 14 HOH HOH . 
E 4 HOH A 12 138 15 HOH HOH . 
E 4 HOH A 13 139 16 HOH HOH . 
E 4 HOH A 14 140 17 HOH HOH . 
E 4 HOH A 15 141 18 HOH HOH . 
E 4 HOH A 16 142 19 HOH HOH . 
E 4 HOH A 17 143 20 HOH HOH . 
E 4 HOH A 18 144 21 HOH HOH . 
E 4 HOH A 19 145 22 HOH HOH . 
E 4 HOH A 20 146 23 HOH HOH . 
E 4 HOH A 21 147 24 HOH HOH . 
E 4 HOH A 22 148 25 HOH HOH . 
E 4 HOH A 23 149 26 HOH HOH . 
E 4 HOH A 24 150 27 HOH HOH . 
E 4 HOH A 25 151 28 HOH HOH . 
E 4 HOH A 26 152 29 HOH HOH . 
E 4 HOH A 27 153 30 HOH HOH . 
E 4 HOH A 28 154 31 HOH HOH . 
E 4 HOH A 29 155 32 HOH HOH . 
E 4 HOH A 30 156 33 HOH HOH . 
E 4 HOH A 31 157 34 HOH HOH . 
E 4 HOH A 32 158 35 HOH HOH . 
E 4 HOH A 33 159 36 HOH HOH . 
E 4 HOH A 34 160 37 HOH HOH . 
E 4 HOH A 35 161 38 HOH HOH . 
E 4 HOH A 36 162 39 HOH HOH . 
E 4 HOH A 37 163 40 HOH HOH . 
E 4 HOH A 38 164 41 HOH HOH . 
E 4 HOH A 39 165 42 HOH HOH . 
E 4 HOH A 40 166 43 HOH HOH . 
E 4 HOH A 41 167 44 HOH HOH . 
E 4 HOH A 42 168 45 HOH HOH . 
E 4 HOH A 43 169 46 HOH HOH . 
E 4 HOH A 44 170 47 HOH HOH . 
E 4 HOH A 45 171 48 HOH HOH . 
E 4 HOH A 46 172 49 HOH HOH . 
E 4 HOH A 47 173 50 HOH HOH . 
E 4 HOH A 48 174 51 HOH HOH . 
E 4 HOH A 49 175 52 HOH HOH . 
E 4 HOH A 50 176 53 HOH HOH . 
E 4 HOH A 51 177 54 HOH HOH . 
E 4 HOH A 52 178 55 HOH HOH . 
E 4 HOH A 53 179 56 HOH HOH . 
E 4 HOH A 54 180 57 HOH HOH . 
E 4 HOH A 55 181 58 HOH HOH . 
E 4 HOH A 56 182 59 HOH HOH . 
E 4 HOH A 57 183 60 HOH HOH . 
E 4 HOH A 58 184 61 HOH HOH . 
E 4 HOH A 59 185 62 HOH HOH . 
E 4 HOH A 60 186 63 HOH HOH . 
E 4 HOH A 61 187 64 HOH HOH . 
E 4 HOH A 62 188 65 HOH HOH . 
E 4 HOH A 63 189 66 HOH HOH . 
E 4 HOH A 64 190 67 HOH HOH . 
E 4 HOH A 65 191 68 HOH HOH . 
E 4 HOH A 66 192 69 HOH HOH . 
E 4 HOH A 67 193 70 HOH HOH . 
E 4 HOH A 68 194 71 HOH HOH . 
E 4 HOH A 69 195 72 HOH HOH . 
E 4 HOH A 70 196 73 HOH HOH . 
E 4 HOH A 71 197 74 HOH HOH . 
E 4 HOH A 72 198 75 HOH HOH . 
E 4 HOH A 73 199 76 HOH HOH . 
E 4 HOH A 74 200 77 HOH HOH . 
E 4 HOH A 75 201 78 HOH HOH . 
E 4 HOH A 76 202 79 HOH HOH . 
E 4 HOH A 77 203 80 HOH HOH . 
E 4 HOH A 78 204 81 HOH HOH . 
E 4 HOH A 79 205 82 HOH HOH . 
E 4 HOH A 80 206 83 HOH HOH . 
E 4 HOH A 81 207 84 HOH HOH . 
E 4 HOH A 82 208 85 HOH HOH . 
E 4 HOH A 83 209 86 HOH HOH . 
E 4 HOH A 84 210 87 HOH HOH . 
E 4 HOH A 85 211 88 HOH HOH . 
E 4 HOH A 86 212 89 HOH HOH . 
E 4 HOH A 87 213 90 HOH HOH . 
E 4 HOH A 88 214 91 HOH HOH . 
E 4 HOH A 89 215 92 HOH HOH . 
E 4 HOH A 90 216 93 HOH HOH . 
E 4 HOH A 91 217 94 HOH HOH . 
E 4 HOH A 92 218 95 HOH HOH . 
E 4 HOH A 93 219 96 HOH HOH . 
E 4 HOH A 94 220 97 HOH HOH . 
E 4 HOH A 95 221 98 HOH HOH . 
E 4 HOH A 96 222 99 HOH HOH . 
E 4 HOH A 97 223 100 HOH HOH . 
E 4 HOH A 98 224 101 HOH HOH . 
E 4 HOH A 99 225 102 HOH HOH . 
E 4 HOH A 100 226 103 HOH HOH . 
E 4 HOH A 101 227 104 HOH HOH . 
E 4 HOH A 102 228 105 HOH HOH . 
E 4 HOH A 103 229 106 HOH HOH . 
E 4 HOH A 104 230 107 HOH HOH . 
E 4 HOH A 105 231 108 HOH HOH . 
E 4 HOH A 106 232 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 21.281 14.137 20.57 1 2.49 ? C1 MPD 125 A 1 
HETATM 2 C C2 MPD . . . C 3 21.462 14.001 22.256 1 48.69 ? C2 MPD 125 A 1 
HETATM 3 O O2 MPD . . . C 3 22.186 15.064 22.732 1 44.42 ? O2 MPD 125 A 1 
HETATM 4 C CM MPD . . . C 3 22.236 15.146 22.729 1 45.24 ? CM MPD 125 A 1 
HETATM 5 C C3 MPD . . . C 3 22.247 15.141 22.732 1 43.21 ? C3 MPD 125 A 1 
HETATM 6 C C4 MPD . . . C 3 23.91 14.671 22.578 1 44.22 ? C4 MPD 125 A 1 
HETATM 7 O O4 MPD . . . C 3 24.733 15.977 22.818 1 22.05 ? O4 MPD 125 A 1 
HETATM 8 C C5 MPD . . . C 3 24.79 16.085 22.821 1 22.87 ? C5 MPD 125 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           8 
#