data_1BPE # _model_server_result.job_id dzAOTUtg3y65A7L-LO1Olw _model_server_result.datetime_utc '2024-10-24 04:34:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bpe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":338}' # _entry.id 1BPE # _exptl.entry_id 1BPE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.77 _cell.angle_gamma 90 _cell.entry_id 1BPE _cell.length_a 39.319 _cell.length_b 68.208 _cell.length_c 75.038 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BPE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 1BPE _atom_sites.fract_transf_matrix[1][1] 0.025433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000786 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DTP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 338 _pdbx_nonpoly_scheme.auth_seq_num 338 _pdbx_nonpoly_scheme.pdb_mon_id DTP _pdbx_nonpoly_scheme.auth_mon_id DTP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . B 2 18.549 11.876 35.507 1 71.19 ? PG DTP 338 A 1 HETATM 2 O O1G DTP . . . B 2 17.279 11.675 35.382 1 16.48 ? O1G DTP 338 A 1 HETATM 3 O O2G DTP . . . B 2 19.049 12.378 34.507 1 12.03 ? O2G DTP 338 A 1 HETATM 4 O O3G DTP . . . B 2 18.972 10.785 36.04 1 35.67 ? O3G DTP 338 A 1 HETATM 5 P PB DTP . . . B 2 19.583 14.276 36.589 1 71.19 ? PB DTP 338 A 1 HETATM 6 O O1B DTP . . . B 2 20.497 14.561 38.004 1 35.67 ? O1B DTP 338 A 1 HETATM 7 O O2B DTP . . . B 2 20.624 13.905 35.593 1 12.03 ? O2B DTP 338 A 1 HETATM 8 O O3B DTP . . . B 2 18.964 12.91 36.615 1 16.48 ? O3B DTP 338 A 1 HETATM 9 P PA DTP . . . B 2 19.03 15.534 34.727 1 100 ? PA DTP 338 A 1 HETATM 10 O O1A DTP . . . B 2 19.741 15.013 34.071 1 14.65 ? O1A DTP 338 A 1 HETATM 11 O O2A DTP . . . B 2 19.037 17.134 34.409 1 1 ? O2A DTP 338 A 1 HETATM 12 O O3A DTP . . . B 2 18.9 15.203 36.214 1 47.96 ? O3A DTP 338 A 1 HETATM 13 O O5' DTP . . . B 2 17.692 15.033 34.466 1 73.64 ? O5' DTP 338 A 1 HETATM 14 C C5' DTP . . . B 2 17.367 13.696 34.802 1 43.89 ? C5' DTP 338 A 1 HETATM 15 C C4' DTP . . . B 2 15.861 13.506 34.535 1 100 ? C4' DTP 338 A 1 HETATM 16 O O4' DTP . . . B 2 15.2 14.809 34.537 1 100 ? O4' DTP 338 A 1 HETATM 17 C C3' DTP . . . B 2 15.377 12.798 33.138 1 100 ? C3' DTP 338 A 1 HETATM 18 O O3' DTP . . . B 2 15.365 11.304 33.116 1 100 ? O3' DTP 338 A 1 HETATM 19 C C2' DTP . . . B 2 13.972 13.427 32.928 1 96.35 ? C2' DTP 338 A 1 HETATM 20 C C1' DTP . . . B 2 14.17 14.862 33.52 1 100 ? C1' DTP 338 A 1 HETATM 21 N N9 DTP . . . B 2 14.606 15.789 32.515 1 100 ? N9 DTP 338 A 1 HETATM 22 C C8 DTP . . . B 2 15.881 16.225 32.297 1 75.86 ? C8 DTP 338 A 1 HETATM 23 N N7 DTP . . . B 2 15.97 17.059 31.296 1 98.31 ? N7 DTP 338 A 1 HETATM 24 C C5 DTP . . . B 2 14.664 17.175 30.828 1 74.2 ? C5 DTP 338 A 1 HETATM 25 C C6 DTP . . . B 2 14.101 17.92 29.779 1 80.28 ? C6 DTP 338 A 1 HETATM 26 N N6 DTP . . . B 2 14.821 18.725 28.98 1 91.06 ? N6 DTP 338 A 1 HETATM 27 N N1 DTP . . . B 2 12.768 17.811 29.582 1 84.14 ? N1 DTP 338 A 1 HETATM 28 C C2 DTP . . . B 2 12.059 17.009 30.386 1 51.58 ? C2 DTP 338 A 1 HETATM 29 N N3 DTP . . . B 2 12.482 16.264 31.401 1 71.76 ? N3 DTP 338 A 1 HETATM 30 C C4 DTP . . . B 2 13.807 16.395 31.57 1 69.85 ? C4 DTP 338 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #