data_1BQO # _model_server_result.job_id GVtLETmP6iWQ8ejFueelQw _model_server_result.datetime_utc '2024-11-21 22:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 1BQO # _exptl.entry_id 1BQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BQO _cell.length_a 37.9 _cell.length_b 79 _cell.length_c 106.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PQS trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,C,D,E,F,G,N 2 1 B,H,I,J,K,L,M,O 2 2 B,H,I,J,K,L,M,O 3 2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_464 -x-1/2,-y+1,z-1/2 -1 0 0 0 -1 0 0 0 1 -18.95 79 -53.05 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A OD1 ASP 25 A ASP 107 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc3 A O ASP 59 A ASP 141 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 A OD2 ASP 71 A ASP 153 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc6 A OD1 ASP 76 A ASP 158 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc7 A O GLY 77 A GLY 159 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 A O GLY 79 A GLY 161 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc9 A O VAL 81 A VAL 163 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc10 A NE2 HIS 84 A HIS 166 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc11 A O GLY 91 A GLY 173 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc12 A O ASN 93 A ASN 175 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc13 A OD1 ASP 95 A ASP 177 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc14 A ND1 HIS 97 A HIS 179 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc15 A OD2 ASP 99 A ASP 181 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc16 A O ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc17 A OD1 ASP 100 A ASP 182 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc19 A O GLU 102 A GLU 184 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc20 A NE2 HIS 119 A HIS 201 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc21 A NE2 HIS 123 A HIS 205 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc22 A NE2 HIS 129 A HIS 211 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc23 C ZN ZN . A ZN 301 1_555 B O THR 173 B THR 255 2_464 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc24 C ZN ZN . A ZN 301 1_555 B OXT THR 173 B THR 255 2_464 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc25 F CA CA . A CA 304 1_555 N O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc26 G CA CA . A CA 305 1_555 N O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc27 B OD1 ASP 25 B ASP 107 1_555 K CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc28 B OD2 ASP 25 B ASP 107 1_555 K CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc29 B O ASP 59 B ASP 141 1_555 L CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc30 B NE2 HIS 69 B HIS 151 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc31 B OD2 ASP 71 B ASP 153 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc32 B OD1 ASP 76 B ASP 158 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc33 B O GLY 77 B GLY 159 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc34 B O GLY 79 B GLY 161 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc35 B N GLY 79 B GLY 161 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.357 ? metalc ? metalc36 B O VAL 81 B VAL 163 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc37 B NE2 HIS 84 B HIS 166 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc38 B O GLY 91 B GLY 173 1_555 L CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc39 B O ASN 93 B ASN 175 1_555 L CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc40 B OD1 ASP 95 B ASP 177 1_555 L CA CA . B CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc41 B ND1 HIS 97 B HIS 179 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc42 B OD2 ASP 99 B ASP 181 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc43 B O ASP 100 B ASP 182 1_555 K CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc44 B OD1 ASP 100 B ASP 182 1_555 K CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc45 B OE2 GLU 102 B GLU 184 1_555 J CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc46 B O GLU 102 B GLU 184 1_555 K CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc47 B NE2 HIS 119 B HIS 201 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc48 B NE2 HIS 123 B HIS 205 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc49 B NE2 HIS 129 B HIS 211 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc50 H ZN ZN . B ZN 301 1_555 M O24 N25 . B N25 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc51 H ZN ZN . B ZN 301 1_555 M O26 N25 . B N25 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc52 K CA CA . B CA 304 1_555 O O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc53 L CA CA . B CA 305 1_555 O O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BQO _atom_sites.fract_transf_matrix[1][1] 0.026385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 301 ZN ZN . D 2 ZN A 1 302 302 ZN ZN . E 3 CA A 1 303 303 CA CA . F 3 CA A 1 304 304 CA CA . G 3 CA A 1 305 305 CA CA . H 2 ZN B 1 301 301 ZN ZN . I 2 ZN B 1 302 302 ZN ZN . J 3 CA B 1 303 303 CA CA . K 3 CA B 1 304 304 CA CA . L 3 CA B 1 305 305 CA CA . M 4 N25 B 1 401 401 N25 N25 . N 5 HOH A 1 306 7 HOH HOH . N 5 HOH A 2 307 11 HOH HOH . N 5 HOH A 3 308 13 HOH HOH . N 5 HOH A 4 309 18 HOH HOH . N 5 HOH A 5 310 20 HOH HOH . N 5 HOH A 6 311 21 HOH HOH . N 5 HOH A 7 312 28 HOH HOH . N 5 HOH A 8 313 35 HOH HOH . N 5 HOH A 9 314 36 HOH HOH . N 5 HOH A 10 315 37 HOH HOH . N 5 HOH A 11 316 38 HOH HOH . N 5 HOH A 12 317 42 HOH HOH . N 5 HOH A 13 318 45 HOH HOH . N 5 HOH A 14 319 47 HOH HOH . N 5 HOH A 15 320 51 HOH HOH . N 5 HOH A 16 321 52 HOH HOH . N 5 HOH A 17 322 53 HOH HOH . N 5 HOH A 18 323 54 HOH HOH . N 5 HOH A 19 324 56 HOH HOH . N 5 HOH A 20 325 60 HOH HOH . N 5 HOH A 21 326 63 HOH HOH . N 5 HOH A 22 327 67 HOH HOH . N 5 HOH A 23 328 103 HOH HOH . N 5 HOH A 24 329 104 HOH HOH . N 5 HOH A 25 330 106 HOH HOH . N 5 HOH A 26 331 109 HOH HOH . N 5 HOH A 27 332 110 HOH HOH . N 5 HOH A 28 333 113 HOH HOH . N 5 HOH A 29 334 117 HOH HOH . N 5 HOH A 30 335 118 HOH HOH . N 5 HOH A 31 336 123 HOH HOH . N 5 HOH A 32 337 125 HOH HOH . N 5 HOH A 33 338 127 HOH HOH . N 5 HOH A 34 339 129 HOH HOH . N 5 HOH A 35 340 130 HOH HOH . N 5 HOH A 36 341 131 HOH HOH . N 5 HOH A 37 342 132 HOH HOH . N 5 HOH A 38 343 133 HOH HOH . N 5 HOH A 39 344 134 HOH HOH . N 5 HOH A 40 345 135 HOH HOH . N 5 HOH A 41 346 136 HOH HOH . N 5 HOH A 42 347 138 HOH HOH . N 5 HOH A 43 348 139 HOH HOH . N 5 HOH A 44 349 143 HOH HOH . O 5 HOH B 1 402 3 HOH HOH . O 5 HOH B 2 403 10 HOH HOH . O 5 HOH B 3 404 12 HOH HOH . O 5 HOH B 4 405 29 HOH HOH . O 5 HOH B 5 406 44 HOH HOH . O 5 HOH B 6 407 49 HOH HOH . O 5 HOH B 7 408 55 HOH HOH . O 5 HOH B 8 409 62 HOH HOH . O 5 HOH B 9 410 70 HOH HOH . O 5 HOH B 10 411 71 HOH HOH . O 5 HOH B 11 412 72 HOH HOH . O 5 HOH B 12 413 73 HOH HOH . O 5 HOH B 13 414 75 HOH HOH . O 5 HOH B 14 415 76 HOH HOH . O 5 HOH B 15 416 101 HOH HOH . O 5 HOH B 16 417 102 HOH HOH . O 5 HOH B 17 418 105 HOH HOH . O 5 HOH B 18 419 108 HOH HOH . O 5 HOH B 19 420 111 HOH HOH . O 5 HOH B 20 421 112 HOH HOH . O 5 HOH B 21 422 114 HOH HOH . O 5 HOH B 22 423 115 HOH HOH . O 5 HOH B 23 424 119 HOH HOH . O 5 HOH B 24 425 120 HOH HOH . O 5 HOH B 25 426 122 HOH HOH . O 5 HOH B 26 427 128 HOH HOH . O 5 HOH B 27 428 137 HOH HOH . O 5 HOH B 28 429 140 HOH HOH . O 5 HOH B 29 430 141 HOH HOH . O 5 HOH B 30 431 142 HOH HOH . O 5 HOH B 31 432 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.844 _atom_site.Cartn_y 24.686 _atom_site.Cartn_z 44.522 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #