data_1BR1
#
_model_server_result.job_id            To-1M9vscCYxjwR6f0sYXw 
_model_server_result.datetime_utc      '2024-12-28 06:44:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1br1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":998}' 
#
_entry.id    1BR1 
#
_exptl.entry_id    1BR1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         111.21 
_cell.angle_beta          106.1 
_cell.angle_gamma         92.58 
_cell.entry_id            1BR1 
_cell.length_a            95.32 
_cell.length_b            144.66 
_cell.length_c            147.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BR1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,U 1 1 
C,D,L,M,N,V 2 1 
E,F,O,P,Q,W 3 1 
G,H,R,S,T,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 N N N 
? 5 Q N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 183 A THR 184 1_555 I MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc2 A OG SER 244 A SER 245 1_555 J AL ALF . A ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.67 ? 
metalc ? metalc3 A OG SER 245 A SER 246 1_555 I MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc4 U O HOH . A HOH 995 1_555 I MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
metalc ? metalc5 U O HOH . A HOH 995 1_555 J AL ALF . A ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.712 ? 
metalc ? metalc6 I MG MG . A MG 997 1_555 K O2B ADP . A ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc7 I MG MG . A MG 997 1_555 J F2 ALF . A ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? 
metalc ? metalc8 I MG MG . A MG 997 1_555 J F4 ALF . A ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc9 I MG MG . A MG 997 1_555 J AL ALF . A ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.43 ? 
metalc ? metalc10 K O1B ADP . A ADP 998 1_555 J AL ALF . A ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.587 ? 
metalc ? metalc11 K O2B ADP . A ADP 998 1_555 J AL ALF . A ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.476 ? 
metalc ? metalc12 K O3B ADP . A ADP 998 1_555 J AL ALF . A ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc13 C OG1 THR 183 C THR 184 1_555 L MG MG . C MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc14 C OG SER 245 C SER 246 1_555 L MG MG . C MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc15 C N GLY 467 C GLY 468 1_555 M AL ALF . C ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.688 ? 
metalc ? metalc16 V O HOH . C HOH 995 1_555 L MG MG . C MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
metalc ? metalc17 V O HOH . C HOH 995 1_555 M AL ALF . C ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.71 ? 
metalc ? metalc18 L MG MG . C MG 997 1_555 N O2B ADP . C ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc19 L MG MG . C MG 997 1_555 M F2 ALF . C ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? 
metalc ? metalc20 L MG MG . C MG 997 1_555 M F4 ALF . C ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc21 L MG MG . C MG 997 1_555 M AL ALF . C ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.43 ? 
metalc ? metalc22 N O3B ADP . C ADP 998 1_555 M AL ALF . C ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc23 N O2B ADP . C ADP 998 1_555 M AL ALF . C ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.475 ? 
metalc ? metalc24 N O1B ADP . C ADP 998 1_555 M AL ALF . C ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.587 ? 
metalc ? metalc25 E OG1 THR 183 E THR 184 1_555 O MG MG . E MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc26 E OG SER 245 E SER 246 1_555 O MG MG . E MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc27 E N GLY 467 E GLY 468 1_555 P AL ALF . E ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.633 ? 
metalc ? metalc28 W O HOH . E HOH 995 1_555 O MG MG . E MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
metalc ? metalc29 W O HOH . E HOH 995 1_555 P AL ALF . E ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.711 ? 
metalc ? metalc30 O MG MG . E MG 997 1_555 Q O2B ADP . E ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc31 O MG MG . E MG 997 1_555 P F2 ALF . E ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? 
metalc ? metalc32 O MG MG . E MG 997 1_555 P F4 ALF . E ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc33 O MG MG . E MG 997 1_555 P AL ALF . E ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.43 ? 
metalc ? metalc34 Q O3B ADP . E ADP 998 1_555 P AL ALF . E ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc35 Q O1B ADP . E ADP 998 1_555 P AL ALF . E ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.587 ? 
metalc ? metalc36 Q O2B ADP . E ADP 998 1_555 P AL ALF . E ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.475 ? 
metalc ? metalc37 G OG1 THR 183 G THR 184 1_555 R MG MG . G MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc38 G OG SER 245 G SER 246 1_555 R MG MG . G MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc39 G N GLY 467 G GLY 468 1_555 S AL ALF . G ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.714 ? 
metalc ? metalc40 X O HOH . G HOH 995 1_555 R MG MG . G MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? 
metalc ? metalc41 X O HOH . G HOH 995 1_555 S AL ALF . G ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.712 ? 
metalc ? metalc42 R MG MG . G MG 997 1_555 T O2B ADP . G ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc43 R MG MG . G MG 997 1_555 S F2 ALF . G ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? 
metalc ? metalc44 R MG MG . G MG 997 1_555 S F4 ALF . G ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc45 R MG MG . G MG 997 1_555 S AL ALF . G ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.431 ? 
metalc ? metalc46 T O3B ADP . G ADP 998 1_555 S AL ALF . G ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc47 T O2B ADP . G ADP 998 1_555 S AL ALF . G ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.476 ? 
metalc ? metalc48 T O1B ADP . G ADP 998 1_555 S AL ALF . G ALF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.586 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1BR1 
_atom_sites.fract_transf_matrix[1][1]    0.010491 
_atom_sites.fract_transf_matrix[1][2]    0.000473 
_atom_sites.fract_transf_matrix[1][3]    0.003489 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00692 
_atom_sites.fract_transf_matrix[2][3]    0.00293 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 MG A 1 997 997 MG MG . 
J 4 ALF A 1 999 999 ALF ALF . 
K 5 ADP A 1 998 998 ADP ADP . 
L 3 MG C 1 997 997 MG MG . 
M 4 ALF C 1 999 999 ALF ALF . 
N 5 ADP C 1 998 998 ADP ADP . 
O 3 MG E 1 997 997 MG MG . 
P 4 ALF E 1 999 999 ALF ALF . 
Q 5 ADP E 1 998 998 ADP ADP . 
R 3 MG G 1 997 997 MG MG . 
S 4 ALF G 1 999 999 ALF ALF . 
T 5 ADP G 1 998 998 ADP ADP . 
U 6 HOH A 1 995 995 HOH HOH . 
U 6 HOH A 2 996 996 HOH HOH . 
V 6 HOH C 1 995 995 HOH HOH . 
V 6 HOH C 2 996 996 HOH HOH . 
W 6 HOH E 1 995 995 HOH HOH . 
W 6 HOH E 2 996 996 HOH HOH . 
X 6 HOH G 1 995 995 HOH HOH . 
X 6 HOH G 2 996 996 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . K 5 -0.496 -4.897 5.211 1 25 ? PB ADP 998 A 1 
HETATM 2 O O1B ADP . . . K 5 0.629 -3.899 5.26 1 25 ? O1B ADP 998 A 1 
HETATM 3 O O2B ADP . . . K 5 -1.576 -4.388 4.307 1 25 ? O2B ADP 998 A 1 
HETATM 4 O O3B ADP . . . K 5 -0.034 -6.246 4.739 1 25 ? O3B ADP 998 A 1 
HETATM 5 P PA ADP . . . K 5 -2.389 -5.47 7.392 1 25 ? PA ADP 998 A 1 
HETATM 6 O O1A ADP . . . K 5 -3.389 -4.358 7.239 1 25 ? O1A ADP 998 A 1 
HETATM 7 O O2A ADP . . . K 5 -2.907 -6.722 6.752 1 25 ? O2A ADP 998 A 1 
HETATM 8 O O3A ADP . . . K 5 -0.999 -5.064 6.718 1 25 ? O3A ADP 998 A 1 
HETATM 9 O O5' ADP . . . K 5 -2.188 -5.78 8.935 1 25 ? O5' ADP 998 A 1 
HETATM 10 C C5' ADP . . . K 5 -2.236 -7.191 9.216 1 25 ? C5' ADP 998 A 1 
HETATM 11 C C4' ADP . . . K 5 -2.788 -7.566 10.581 1 25 ? C4' ADP 998 A 1 
HETATM 12 O O4' ADP . . . K 5 -2.465 -6.572 11.601 1 25 ? O4' ADP 998 A 1 
HETATM 13 C C3' ADP . . . K 5 -4.276 -7.828 10.618 1 25 ? C3' ADP 998 A 1 
HETATM 14 O O3' ADP . . . K 5 -4.547 -9.184 10.208 1 25 ? O3' ADP 998 A 1 
HETATM 15 C C2' ADP . . . K 5 -4.648 -7.367 12.054 1 25 ? C2' ADP 998 A 1 
HETATM 16 O O2' ADP . . . K 5 -4.735 -8.425 13.032 1 25 ? O2' ADP 998 A 1 
HETATM 17 C C1' ADP . . . K 5 -3.562 -6.346 12.406 1 25 ? C1' ADP 998 A 1 
HETATM 18 N N9 ADP . . . K 5 -3.973 -4.941 12.277 1 25 ? N9 ADP 998 A 1 
HETATM 19 C C8 ADP . . . K 5 -3.288 -3.91 11.727 1 25 ? C8 ADP 998 A 1 
HETATM 20 N N7 ADP . . . K 5 -3.665 -2.705 12.196 1 25 ? N7 ADP 998 A 1 
HETATM 21 C C5 ADP . . . K 5 -4.759 -2.995 13.001 1 25 ? C5 ADP 998 A 1 
HETATM 22 C C6 ADP . . . K 5 -5.642 -2.151 13.728 1 25 ? C6 ADP 998 A 1 
HETATM 23 N N6 ADP . . . K 5 -5.558 -0.816 13.767 1 25 ? N6 ADP 998 A 1 
HETATM 24 N N1 ADP . . . K 5 -6.624 -2.779 14.433 1 25 ? N1 ADP 998 A 1 
HETATM 25 C C2 ADP . . . K 5 -6.696 -4.146 14.395 1 25 ? C2 ADP 998 A 1 
HETATM 26 N N3 ADP . . . K 5 -5.934 -4.998 13.768 1 25 ? N3 ADP 998 A 1 
HETATM 27 C C4 ADP . . . K 5 -5.002 -4.358 13.015 1 25 ? C4 ADP 998 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           27 
#