data_1BR4
#
_model_server_result.job_id            1yT2hhhajOZm28KWpB4VJQ 
_model_server_result.datetime_utc      '2024-11-22 10:45:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1br4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":998}' 
#
_entry.id    1BR4 
#
_exptl.entry_id    1BR4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         111.21 
_cell.angle_beta          106.1 
_cell.angle_gamma         92.58 
_cell.entry_id            1BR4 
_cell.length_a            95.32 
_cell.length_b            144.66 
_cell.length_c            147.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BR4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,U 1 1 
C,D,L,M,N,V 2 1 
E,F,O,P,Q,W 3 1 
G,H,R,S,T,X 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 M N N 
? 4 P N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 183 A THR 184 1_555 I MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc2 A OG SER 245 A SER 246 1_555 I MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? 
metalc ? metalc3 U O HOH . A HOH 995 1_555 I MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc4 I MG MG . A MG 997 1_555 J O2B ADP . A ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc5 I MG MG . A MG 997 1_555 K F3 BEF . A BEF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc6 J O3B ADP . A ADP 998 1_555 K BE BEF . A BEF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? 
metalc ? metalc7 C OG1 THR 183 C THR 184 1_555 L MG MG . C MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc8 C OG SER 245 C SER 246 1_555 L MG MG . C MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc9 V O HOH . C HOH 995 1_555 L MG MG . C MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc10 L MG MG . C MG 997 1_555 M O2B ADP . C ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc11 L MG MG . C MG 997 1_555 N F3 BEF . C BEF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc12 M O3B ADP . C ADP 998 1_555 N BE BEF . C BEF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? 
metalc ? metalc13 E OG1 THR 183 E THR 184 1_555 O MG MG . E MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc14 E OG SER 245 E SER 246 1_555 O MG MG . E MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? 
metalc ? metalc15 W O HOH . E HOH 995 1_555 O MG MG . E MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc16 O MG MG . E MG 997 1_555 P O2B ADP . E ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc17 O MG MG . E MG 997 1_555 Q F3 BEF . E BEF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc18 P O3B ADP . E ADP 998 1_555 Q BE BEF . E BEF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.569 ? 
metalc ? metalc19 G OG1 THR 183 G THR 184 1_555 R MG MG . G MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc20 G OG SER 245 G SER 246 1_555 R MG MG . G MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? 
metalc ? metalc21 X O HOH . G HOH 995 1_555 R MG MG . G MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc22 R MG MG . G MG 997 1_555 S O2B ADP . G ADP 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc23 R MG MG . G MG 997 1_555 T F3 BEF . G BEF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc24 S O3B ADP . G ADP 998 1_555 T BE BEF . G BEF 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1BR4 
_atom_sites.fract_transf_matrix[1][1]    0.010491 
_atom_sites.fract_transf_matrix[1][2]    0.000473 
_atom_sites.fract_transf_matrix[1][3]    0.003489 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00692 
_atom_sites.fract_transf_matrix[2][3]    0.00293 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 MG A 1 997 997 MG MG . 
J 4 ADP A 1 998 998 ADP ADP . 
K 5 BEF A 1 999 999 BEF BEF . 
L 3 MG C 1 997 997 MG MG . 
M 4 ADP C 1 998 998 ADP ADP . 
N 5 BEF C 1 999 999 BEF BEF . 
O 3 MG E 1 997 997 MG MG . 
P 4 ADP E 1 998 998 ADP ADP . 
Q 5 BEF E 1 999 999 BEF BEF . 
R 3 MG G 1 997 997 MG MG . 
S 4 ADP G 1 998 998 ADP ADP . 
T 5 BEF G 1 999 999 BEF BEF . 
U 6 HOH A 1 995 995 HOH HOH . 
U 6 HOH A 2 996 996 HOH HOH . 
V 6 HOH C 1 995 995 HOH HOH . 
V 6 HOH C 2 996 996 HOH HOH . 
W 6 HOH E 1 995 995 HOH HOH . 
W 6 HOH E 2 996 996 HOH HOH . 
X 6 HOH G 1 995 995 HOH HOH . 
X 6 HOH G 2 996 996 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . M 4 72.059 39.077 50.513 1 25 ? PB ADP 998 C 1 
HETATM 2 O O1B ADP . . . M 4 73.531 38.915 50.419 1 25 ? O1B ADP 998 C 1 
HETATM 3 O O2B ADP . . . M 4 71.398 38.02 51.374 1 25 ? O2B ADP 998 C 1 
HETATM 4 O O3B ADP . . . M 4 71.696 40.48 51.051 1 25 ? O3B ADP 998 C 1 
HETATM 5 P PA ADP . . . M 4 70.352 37.996 48.355 1 25 ? PA ADP 998 C 1 
HETATM 6 O O1A ADP . . . M 4 70.682 36.557 48.489 1 25 ? O1A ADP 998 C 1 
HETATM 7 O O2A ADP . . . M 4 69.024 38.263 48.981 1 25 ? O2A ADP 998 C 1 
HETATM 8 O O3A ADP . . . M 4 71.45 38.931 48.962 1 25 ? O3A ADP 998 C 1 
HETATM 9 O O5' ADP . . . M 4 70.342 38.481 46.773 1 25 ? O5' ADP 998 C 1 
HETATM 10 C C5' ADP . . . M 4 69.806 39.776 46.392 1 25 ? C5' ADP 998 C 1 
HETATM 11 C C4' ADP . . . M 4 69.027 39.535 45.131 1 25 ? C4' ADP 998 C 1 
HETATM 12 O O4' ADP . . . M 4 70.002 39.219 44.097 1 25 ? O4' ADP 998 C 1 
HETATM 13 C C3' ADP . . . M 4 68.19 38.274 45.204 1 25 ? C3' ADP 998 C 1 
HETATM 14 O O3' ADP . . . M 4 66.855 38.477 45.704 1 25 ? O3' ADP 998 C 1 
HETATM 15 C C2' ADP . . . M 4 68.228 37.769 43.793 1 25 ? C2' ADP 998 C 1 
HETATM 16 O O2' ADP . . . M 4 67.425 38.584 42.936 1 25 ? O2' ADP 998 C 1 
HETATM 17 C C1' ADP . . . M 4 69.642 38.054 43.454 1 25 ? C1' ADP 998 C 1 
HETATM 18 N N9 ADP . . . M 4 70.604 36.976 43.547 1 25 ? N9 ADP 998 C 1 
HETATM 19 C C8 ADP . . . M 4 71.655 36.803 44.38 1 25 ? C8 ADP 998 C 1 
HETATM 20 N N7 ADP . . . M 4 72.32 35.665 44.161 1 25 ? N7 ADP 998 C 1 
HETATM 21 C C5 ADP . . . M 4 71.624 35.073 43.096 1 25 ? C5 ADP 998 C 1 
HETATM 22 C C6 ADP . . . M 4 71.795 33.846 42.362 1 25 ? C6 ADP 998 C 1 
HETATM 23 N N6 ADP . . . M 4 72.713 32.926 42.531 1 25 ? N6 ADP 998 C 1 
HETATM 24 N N1 ADP . . . M 4 70.92 33.548 41.349 1 25 ? N1 ADP 998 C 1 
HETATM 25 C C2 ADP . . . M 4 69.932 34.442 41.096 1 25 ? C2 ADP 998 C 1 
HETATM 26 N N3 ADP . . . M 4 69.666 35.62 41.707 1 25 ? N3 ADP 998 C 1 
HETATM 27 C C4 ADP . . . M 4 70.567 35.874 42.713 1 25 ? C4 ADP 998 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#