data_1BRA
#
_model_server_result.job_id            qwUqd28Bwy4CODgXNy5kXg 
_model_server_result.datetime_utc      '2025-07-30 17:16:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bra 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":246}' 
#
_entry.id    1BRA 
#
_exptl.entry_id    1BRA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BRA 
_cell.length_a            124.4 
_cell.length_b            124.4 
_cell.length_c            124.4 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BRA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 124.4 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc4 A OE1 GLU 59 A GLU 77 1_555 B CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc6 D O HOH . A HOH 261 1_555 B CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     1BRA 
_atom_sites.fract_transf_matrix[1][1]    0.008039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008039 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 302 302 CA CA . 
C 3 BEN A 1 246 246 BEN BEN . 
D 4 HOH A 1 248 248 HOH HOH . 
D 4 HOH A 2 249 249 HOH HOH . 
D 4 HOH A 3 250 250 HOH HOH . 
D 4 HOH A 4 251 251 HOH HOH . 
D 4 HOH A 5 252 252 HOH HOH . 
D 4 HOH A 6 253 253 HOH HOH . 
D 4 HOH A 7 254 254 HOH HOH . 
D 4 HOH A 8 255 255 HOH HOH . 
D 4 HOH A 9 256 256 HOH HOH . 
D 4 HOH A 10 257 257 HOH HOH . 
D 4 HOH A 11 258 258 HOH HOH . 
D 4 HOH A 12 259 259 HOH HOH . 
D 4 HOH A 13 260 260 HOH HOH . 
D 4 HOH A 14 261 261 HOH HOH . 
D 4 HOH A 15 262 262 HOH HOH . 
D 4 HOH A 16 263 263 HOH HOH . 
D 4 HOH A 17 264 264 HOH HOH . 
D 4 HOH A 18 265 265 HOH HOH . 
D 4 HOH A 19 266 266 HOH HOH . 
D 4 HOH A 20 267 267 HOH HOH . 
D 4 HOH A 21 268 268 HOH HOH . 
D 4 HOH A 22 269 269 HOH HOH . 
D 4 HOH A 23 270 270 HOH HOH . 
D 4 HOH A 24 271 271 HOH HOH . 
D 4 HOH A 25 272 272 HOH HOH . 
D 4 HOH A 26 273 273 HOH HOH . 
D 4 HOH A 27 275 275 HOH HOH . 
D 4 HOH A 28 276 276 HOH HOH . 
D 4 HOH A 29 277 277 HOH HOH . 
D 4 HOH A 30 278 278 HOH HOH . 
D 4 HOH A 31 279 279 HOH HOH . 
D 4 HOH A 32 280 280 HOH HOH . 
D 4 HOH A 33 281 281 HOH HOH . 
D 4 HOH A 34 282 282 HOH HOH . 
D 4 HOH A 35 283 283 HOH HOH . 
D 4 HOH A 36 284 284 HOH HOH . 
D 4 HOH A 37 285 285 HOH HOH . 
D 4 HOH A 38 286 286 HOH HOH . 
D 4 HOH A 39 287 287 HOH HOH . 
D 4 HOH A 40 288 288 HOH HOH . 
D 4 HOH A 41 289 289 HOH HOH . 
D 4 HOH A 42 290 290 HOH HOH . 
D 4 HOH A 43 291 291 HOH HOH . 
D 4 HOH A 44 292 292 HOH HOH . 
D 4 HOH A 45 293 293 HOH HOH . 
D 4 HOH A 46 294 294 HOH HOH . 
D 4 HOH A 47 295 295 HOH HOH . 
D 4 HOH A 48 296 296 HOH HOH . 
D 4 HOH A 49 297 297 HOH HOH . 
D 4 HOH A 50 298 298 HOH HOH . 
D 4 HOH A 51 300 300 HOH HOH . 
D 4 HOH A 52 301 301 HOH HOH . 
D 4 HOH A 53 303 303 HOH HOH . 
D 4 HOH A 54 304 304 HOH HOH . 
D 4 HOH A 55 305 305 HOH HOH . 
D 4 HOH A 56 306 306 HOH HOH . 
D 4 HOH A 57 307 307 HOH HOH . 
D 4 HOH A 58 308 308 HOH HOH . 
D 4 HOH A 59 309 309 HOH HOH . 
D 4 HOH A 60 310 310 HOH HOH . 
D 4 HOH A 61 311 311 HOH HOH . 
D 4 HOH A 62 312 312 HOH HOH . 
D 4 HOH A 63 313 313 HOH HOH . 
D 4 HOH A 64 314 314 HOH HOH . 
D 4 HOH A 65 315 315 HOH HOH . 
D 4 HOH A 66 316 316 HOH HOH . 
D 4 HOH A 67 317 317 HOH HOH . 
D 4 HOH A 68 318 318 HOH HOH . 
D 4 HOH A 69 319 319 HOH HOH . 
D 4 HOH A 70 320 320 HOH HOH . 
D 4 HOH A 71 321 321 HOH HOH . 
D 4 HOH A 72 322 322 HOH HOH . 
D 4 HOH A 73 323 323 HOH HOH . 
D 4 HOH A 74 324 324 HOH HOH . 
D 4 HOH A 75 327 327 HOH HOH . 
D 4 HOH A 76 328 328 HOH HOH . 
D 4 HOH A 77 329 329 HOH HOH . 
D 4 HOH A 78 330 330 HOH HOH . 
D 4 HOH A 79 332 332 HOH HOH . 
D 4 HOH A 80 333 333 HOH HOH . 
D 4 HOH A 81 335 335 HOH HOH . 
D 4 HOH A 82 336 336 HOH HOH . 
D 4 HOH A 83 338 338 HOH HOH . 
D 4 HOH A 84 339 339 HOH HOH . 
D 4 HOH A 85 340 340 HOH HOH . 
D 4 HOH A 86 341 341 HOH HOH . 
D 4 HOH A 87 342 342 HOH HOH . 
D 4 HOH A 88 343 343 HOH HOH . 
D 4 HOH A 89 344 344 HOH HOH . 
D 4 HOH A 90 345 345 HOH HOH . 
D 4 HOH A 91 346 346 HOH HOH . 
D 4 HOH A 92 347 347 HOH HOH . 
D 4 HOH A 93 348 348 HOH HOH . 
D 4 HOH A 94 349 349 HOH HOH . 
D 4 HOH A 95 350 350 HOH HOH . 
D 4 HOH A 96 351 351 HOH HOH . 
D 4 HOH A 97 352 352 HOH HOH . 
D 4 HOH A 98 353 353 HOH HOH . 
D 4 HOH A 99 354 354 HOH HOH . 
D 4 HOH A 100 355 355 HOH HOH . 
D 4 HOH A 101 356 356 HOH HOH . 
D 4 HOH A 102 357 357 HOH HOH . 
D 4 HOH A 103 358 358 HOH HOH . 
D 4 HOH A 104 359 359 HOH HOH . 
D 4 HOH A 105 360 360 HOH HOH . 
D 4 HOH A 106 361 361 HOH HOH . 
D 4 HOH A 107 362 362 HOH HOH . 
D 4 HOH A 108 363 363 HOH HOH . 
D 4 HOH A 109 364 364 HOH HOH . 
D 4 HOH A 110 365 365 HOH HOH . 
D 4 HOH A 111 366 366 HOH HOH . 
D 4 HOH A 112 367 367 HOH HOH . 
D 4 HOH A 113 368 368 HOH HOH . 
D 4 HOH A 114 369 369 HOH HOH . 
D 4 HOH A 115 370 370 HOH HOH . 
D 4 HOH A 116 371 371 HOH HOH . 
D 4 HOH A 117 372 372 HOH HOH . 
D 4 HOH A 118 373 373 HOH HOH . 
D 4 HOH A 119 374 374 HOH HOH . 
D 4 HOH A 120 375 375 HOH HOH . 
D 4 HOH A 121 376 376 HOH HOH . 
D 4 HOH A 122 377 377 HOH HOH . 
D 4 HOH A 123 378 378 HOH HOH . 
D 4 HOH A 124 379 379 HOH HOH . 
D 4 HOH A 125 380 380 HOH HOH . 
D 4 HOH A 126 381 381 HOH HOH . 
D 4 HOH A 127 382 382 HOH HOH . 
D 4 HOH A 128 383 383 HOH HOH . 
D 4 HOH A 129 384 384 HOH HOH . 
D 4 HOH A 130 385 385 HOH HOH . 
D 4 HOH A 131 386 386 HOH HOH . 
D 4 HOH A 132 387 387 HOH HOH . 
D 4 HOH A 133 388 388 HOH HOH . 
D 4 HOH A 134 389 389 HOH HOH . 
D 4 HOH A 135 390 390 HOH HOH . 
D 4 HOH A 136 391 391 HOH HOH . 
D 4 HOH A 137 392 392 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . C 3 7.788 49.769 56.097 1 27.42 ? C1 BEN 246 A 1 
HETATM 2 C C2 BEN . . . C 3 7.885 48.698 56.963 1 29.06 ? C2 BEN 246 A 1 
HETATM 3 C C3 BEN . . . C 3 8.055 47.38 56.487 1 28.21 ? C3 BEN 246 A 1 
HETATM 4 C C4 BEN . . . C 3 8.244 47.199 55.109 1 28.43 ? C4 BEN 246 A 1 
HETATM 5 C C5 BEN . . . C 3 8.213 48.308 54.251 1 28.15 ? C5 BEN 246 A 1 
HETATM 6 C C6 BEN . . . C 3 8.009 49.591 54.761 1 27.44 ? C6 BEN 246 A 1 
HETATM 7 C C BEN . . . C 3 7.62 51.057 56.597 1 27.49 ? C BEN 246 A 1 
HETATM 8 N N1 BEN . . . C 3 7.687 51.153 57.93 1 28.42 ? N1 BEN 246 A 1 
HETATM 9 N N2 BEN . . . C 3 7.431 52.09 55.801 1 24.37 ? N2 BEN 246 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           84 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           421 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           9 
#