data_1BRP # _model_server_result.job_id vT_9VJPj0jNIn-txspNmig _model_server_result.datetime_utc '2024-11-17 15:52:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1brp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":183}' # _entry.id 1BRP # _exptl.entry_id 1BRP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BRP _cell.length_a 104 _cell.length_b 104 _cell.length_c 74.4 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 120 A CYS 120 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 277 n n C1 C6 RTL sing 278 n n C1 C16 RTL sing 279 n n C1 C17 RTL sing 280 n n C2 C3 RTL sing 281 n n C2 H21 RTL sing 282 n n C2 H22 RTL sing 283 n n C3 C4 RTL sing 284 n n C3 H31 RTL sing 285 n n C3 H32 RTL sing 286 n n C4 C5 RTL sing 287 n n C4 H41 RTL sing 288 n n C4 H42 RTL sing 289 n n C5 C6 RTL doub 290 n n C5 C18 RTL sing 291 n n C6 C7 RTL sing 292 n n C7 C8 RTL doub 293 e n C7 H7 RTL sing 294 n n C8 C9 RTL sing 295 n n C8 H8 RTL sing 296 n n C9 C10 RTL doub 297 e n C9 C19 RTL sing 298 n n C10 C11 RTL sing 299 n n C10 H10 RTL sing 300 n n C11 C12 RTL doub 301 e n C11 H11 RTL sing 302 n n C12 C13 RTL sing 303 n n C12 H12 RTL sing 304 n n C13 C14 RTL doub 305 e n C13 C20 RTL sing 306 n n C14 C15 RTL sing 307 n n C14 H14 RTL sing 308 n n C15 O1 RTL sing 309 n n C15 H151 RTL sing 310 n n C15 H152 RTL sing 311 n n O1 HO1 RTL sing 312 n n C16 H161 RTL sing 313 n n C16 H162 RTL sing 314 n n C16 H163 RTL sing 315 n n C17 H171 RTL sing 316 n n C17 H172 RTL sing 317 n n C17 H173 RTL sing 318 n n C18 H181 RTL sing 319 n n C18 H182 RTL sing 320 n n C18 H183 RTL sing 321 n n C19 H191 RTL sing 322 n n C19 H192 RTL sing 323 n n C19 H193 RTL sing 324 n n C20 H201 RTL sing 325 n n C20 H202 RTL sing 326 n n C20 H203 RTL sing 327 n n # _atom_sites.entry_id 1BRP _atom_sites.fract_transf_matrix[1][1] 0.009615 _atom_sites.fract_transf_matrix[1][2] 0.005551 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RTL A 1 183 176 RTL RTL . C 3 HOH A 1 184 177 HOH HOH . C 3 HOH A 2 185 178 HOH HOH . C 3 HOH A 3 186 179 HOH HOH . C 3 HOH A 4 187 180 HOH HOH . C 3 HOH A 5 188 181 HOH HOH . C 3 HOH A 6 189 182 HOH HOH . C 3 HOH A 7 190 183 HOH HOH . C 3 HOH A 8 191 184 HOH HOH . C 3 HOH A 9 192 185 HOH HOH . C 3 HOH A 10 193 186 HOH HOH . C 3 HOH A 11 194 187 HOH HOH . C 3 HOH A 12 195 188 HOH HOH . C 3 HOH A 13 196 189 HOH HOH . C 3 HOH A 14 197 190 HOH HOH . C 3 HOH A 15 198 191 HOH HOH . C 3 HOH A 16 199 192 HOH HOH . C 3 HOH A 17 200 193 HOH HOH . C 3 HOH A 18 201 194 HOH HOH . C 3 HOH A 19 202 195 HOH HOH . C 3 HOH A 20 203 196 HOH HOH . C 3 HOH A 21 204 197 HOH HOH . C 3 HOH A 22 205 198 HOH HOH . C 3 HOH A 23 206 199 HOH HOH . C 3 HOH A 24 207 200 HOH HOH . C 3 HOH A 25 208 201 HOH HOH . C 3 HOH A 26 209 202 HOH HOH . C 3 HOH A 27 210 203 HOH HOH . C 3 HOH A 28 211 204 HOH HOH . C 3 HOH A 29 212 205 HOH HOH . C 3 HOH A 30 213 206 HOH HOH . C 3 HOH A 31 214 207 HOH HOH . C 3 HOH A 32 215 208 HOH HOH . C 3 HOH A 33 216 209 HOH HOH . C 3 HOH A 34 217 210 HOH HOH . C 3 HOH A 35 218 211 HOH HOH . C 3 HOH A 36 219 212 HOH HOH . C 3 HOH A 37 220 213 HOH HOH . C 3 HOH A 38 221 214 HOH HOH . C 3 HOH A 39 222 215 HOH HOH . C 3 HOH A 40 223 216 HOH HOH . C 3 HOH A 41 224 217 HOH HOH . C 3 HOH A 42 225 218 HOH HOH . C 3 HOH A 43 226 219 HOH HOH . C 3 HOH A 44 227 220 HOH HOH . C 3 HOH A 45 228 221 HOH HOH . C 3 HOH A 46 229 222 HOH HOH . C 3 HOH A 47 230 223 HOH HOH . C 3 HOH A 48 231 224 HOH HOH . C 3 HOH A 49 232 225 HOH HOH . C 3 HOH A 50 233 226 HOH HOH . C 3 HOH A 51 234 227 HOH HOH . C 3 HOH A 52 235 228 HOH HOH . C 3 HOH A 53 236 229 HOH HOH . C 3 HOH A 54 237 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . B 2 17.964 51.169 -35.88 1 17.52 ? C1 RTL 183 A 1 HETATM 2 C C2 RTL . . . B 2 19.404 51.49 -35.468 1 15.76 ? C2 RTL 183 A 1 HETATM 3 C C3 RTL . . . B 2 19.515 52.77 -34.652 1 25.52 ? C3 RTL 183 A 1 HETATM 4 C C4 RTL . . . B 2 18.464 53.761 -35.124 1 58.06 ? C4 RTL 183 A 1 HETATM 5 C C5 RTL . . . B 2 17.072 53.191 -34.892 1 38.74 ? C5 RTL 183 A 1 HETATM 6 C C6 RTL . . . B 2 16.826 51.864 -35.137 1 37.88 ? C6 RTL 183 A 1 HETATM 7 C C7 RTL . . . B 2 15.422 51.46 -35.051 1 21.06 ? C7 RTL 183 A 1 HETATM 8 C C8 RTL . . . B 2 14.593 52.127 -35.925 1 23.45 ? C8 RTL 183 A 1 HETATM 9 C C9 RTL . . . B 2 13.219 51.597 -35.972 1 25.96 ? C9 RTL 183 A 1 HETATM 10 C C10 RTL . . . B 2 12.482 52.271 -36.912 1 32.37 ? C10 RTL 183 A 1 HETATM 11 C C11 RTL . . . B 2 11.091 51.811 -36.974 1 21.62 ? C11 RTL 183 A 1 HETATM 12 C C12 RTL . . . B 2 10.371 52.637 -37.807 1 12.68 ? C12 RTL 183 A 1 HETATM 13 C C13 RTL . . . B 2 8.911 52.463 -37.768 1 15.69 ? C13 RTL 183 A 1 HETATM 14 C C14 RTL . . . B 2 8.35 53.496 -38.477 1 34.11 ? C14 RTL 183 A 1 HETATM 15 C C15 RTL . . . B 2 7.02 53.196 -38.992 1 20.49 ? C15 RTL 183 A 1 HETATM 16 O O1 RTL . . . B 2 6.105 54.016 -38.397 1 39.99 ? O1 RTL 183 A 1 HETATM 17 C C16 RTL . . . B 2 17.905 49.951 -34.967 1 6.93 ? C16 RTL 183 A 1 HETATM 18 C C17 RTL . . . B 2 17.889 50.728 -37.324 1 19.29 ? C17 RTL 183 A 1 HETATM 19 C C18 RTL . . . B 2 16.406 54.14 -33.911 1 39.96 ? C18 RTL 183 A 1 HETATM 20 C C19 RTL . . . B 2 13.033 50.367 -35.09 1 11.99 ? C19 RTL 183 A 1 HETATM 21 C C20 RTL . . . B 2 8.523 51.054 -38.201 1 7.88 ? C20 RTL 183 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #