data_1BRR # _model_server_result.job_id IgN48uj4h4cAhhnx5DE6Lg _model_server_result.datetime_utc '2024-11-28 04:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1brr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":999}' # _entry.id 1BRR # _exptl.entry_id 1BRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.94 _cell.angle_gamma 90 _cell.entry_id 1BRR _cell.length_a 120.52 _cell.length_b 105.96 _cell.length_c 80.19 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 S N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 MAN GLC C1 O1 . O2 HO2 . sing 2 ? 2 3 2 SGA MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D GLC 1 D 1 GLC S 24 GLC 2 n D MAN 2 D 2 MAN S 25 MAN 2 n D SGA 3 D 3 SGA S 26 SGA 2 n E GLC 1 E 1 GLC S 34 GLC 2 n E MAN 2 E 2 MAN S 35 MAN 2 n E SGA 3 E 3 SGA S 36 SGA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C PCA 1 C PCA 1 1_555 C N ALA 2 C ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 D O2 GLC . D GLC 1 1_555 D C1 MAN . D MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale3 D O6 MAN . D MAN 2 1_555 D C1 SGA . D SGA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale4 E O2 GLC . E GLC 1 1_555 E C1 MAN . E MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale5 E O6 MAN . E MAN 2 1_555 E C1 SGA . E SGA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 429 n n C1 C6 RET sing 430 n n C1 C16 RET sing 431 n n C1 C17 RET sing 432 n n C2 C3 RET sing 433 n n C2 H21 RET sing 434 n n C2 H22 RET sing 435 n n C3 C4 RET sing 436 n n C3 H31 RET sing 437 n n C3 H32 RET sing 438 n n C4 C5 RET sing 439 n n C4 H41 RET sing 440 n n C4 H42 RET sing 441 n n C5 C6 RET doub 442 n n C5 C18 RET sing 443 n n C6 C7 RET sing 444 n n C7 C8 RET doub 445 e n C7 H7 RET sing 446 n n C8 C9 RET sing 447 n n C8 H8 RET sing 448 n n C9 C10 RET doub 449 e n C9 C19 RET sing 450 n n C10 C11 RET sing 451 n n C10 H10 RET sing 452 n n C11 C12 RET doub 453 e n C11 H11 RET sing 454 n n C12 C13 RET sing 455 n n C12 H12 RET sing 456 n n C13 C14 RET doub 457 e n C13 C20 RET sing 458 n n C14 C15 RET sing 459 n n C14 H14 RET sing 460 n n C15 O1 RET doub 461 n n C15 H15 RET sing 462 n n C16 H161 RET sing 463 n n C16 H162 RET sing 464 n n C16 H163 RET sing 465 n n C17 H171 RET sing 466 n n C17 H172 RET sing 467 n n C17 H173 RET sing 468 n n C18 H181 RET sing 469 n n C18 H182 RET sing 470 n n C18 H183 RET sing 471 n n C19 H191 RET sing 472 n n C19 H192 RET sing 473 n n C19 H193 RET sing 474 n n C20 H201 RET sing 475 n n C20 H202 RET sing 476 n n C20 H203 RET sing 477 n n # _atom_sites.entry_id 1BRR _atom_sites.fract_transf_matrix[1][1] 0.008297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 RET A 1 999 999 RET RET . G 4 ARC A 1 1000 8 ARC ARC . H 4 ARC A 1 1001 22 ARC ARC . I 4 ARC A 1 1002 31 ARC ARC . J 5 GOL A 1 1003 23 GOL GOL . K 6 BGC B 1 251 4 BGC BGC . L 3 RET B 1 999 999 RET RET . M 4 ARC B 1 1000 9 ARC ARC . N 4 ARC B 1 1001 11 ARC ARC . O 4 ARC B 1 1002 12 ARC ARC . P 4 ARC B 1 1003 21 ARC ARC . Q 7 OCT B 1 1004 5 OCT OCT . R 5 GOL B 1 1005 13 GOL GOL . S 3 RET C 1 999 999 RET RET . T 4 ARC C 1 1000 6 ARC ARC . U 4 ARC C 1 1001 7 ARC ARC . V 4 ARC C 1 1002 32 ARC ARC . W 5 GOL C 1 1003 33 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . L 3 20.771 17.422 10.364 1 31.64 ? C1 RET 999 B 1 HETATM 2 C C2 RET . . . L 3 19.266 17.306 10.631 1 31.19 ? C2 RET 999 B 1 HETATM 3 C C3 RET . . . L 3 18.667 18.684 10.803 1 30.5 ? C3 RET 999 B 1 HETATM 4 C C4 RET . . . L 3 19.159 19.304 12.095 1 32.15 ? C4 RET 999 B 1 HETATM 5 C C5 RET . . . L 3 20.598 18.873 12.444 1 32.02 ? C5 RET 999 B 1 HETATM 6 C C6 RET . . . L 3 21.418 18.22 11.525 1 31.78 ? C6 RET 999 B 1 HETATM 7 C C7 RET . . . L 3 22.903 18.296 11.671 1 34.52 ? C7 RET 999 B 1 HETATM 8 C C8 RET . . . L 3 23.72 17.785 10.701 1 38.9 ? C8 RET 999 B 1 HETATM 9 C C9 RET . . . L 3 25.185 17.794 10.771 1 40.11 ? C9 RET 999 B 1 HETATM 10 C C10 RET . . . L 3 25.863 17.28 9.717 1 42.17 ? C10 RET 999 B 1 HETATM 11 C C11 RET . . . L 3 27.288 17.16 9.634 1 43.95 ? C11 RET 999 B 1 HETATM 12 C C12 RET . . . L 3 27.803 16.71 8.356 1 45.98 ? C12 RET 999 B 1 HETATM 13 C C13 RET . . . L 3 29.14 16.351 8.11 1 48.8 ? C13 RET 999 B 1 HETATM 14 C C14 RET . . . L 3 29.381 15.913 7.056 1 49.64 ? C14 RET 999 B 1 HETATM 15 C C15 RET . . . L 3 30.631 15.24 6.694 1 47.24 ? C15 RET 999 B 1 HETATM 16 C C16 RET . . . L 3 21.343 16.014 10.27 1 31.51 ? C16 RET 999 B 1 HETATM 17 C C17 RET . . . L 3 21.009 18.142 9.035 1 31.62 ? C17 RET 999 B 1 HETATM 18 C C18 RET . . . L 3 21.106 19.168 13.838 1 32.15 ? C18 RET 999 B 1 HETATM 19 C C19 RET . . . L 3 25.911 18.382 11.971 1 41.81 ? C19 RET 999 B 1 HETATM 20 C C20 RET . . . L 3 30.152 16.497 9.133 1 49.52 ? C20 RET 999 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #