data_1BSV # _model_server_result.job_id r_Z7fP6DUe4RreortguFeA _model_server_result.datetime_utc '2024-11-28 10:52:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bsv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":350}' # _entry.id 1BSV # _exptl.entry_id 1BSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BSV _cell.length_a 104.3 _cell.length_b 104.3 _cell.length_c 74.9 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 1BSV _atom_sites.fract_transf_matrix[1][1] 0.009588 _atom_sites.fract_transf_matrix[1][2] 0.005535 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 350 350 NDP NDP . C 3 HOH A 1 403 3 HOH HOH . C 3 HOH A 2 404 4 HOH HOH . C 3 HOH A 3 405 5 HOH HOH . C 3 HOH A 4 406 6 HOH HOH . C 3 HOH A 5 407 7 HOH HOH . C 3 HOH A 6 408 8 HOH HOH . C 3 HOH A 7 409 9 HOH HOH . C 3 HOH A 8 410 10 HOH HOH . C 3 HOH A 9 411 11 HOH HOH . C 3 HOH A 10 412 12 HOH HOH . C 3 HOH A 11 413 13 HOH HOH . C 3 HOH A 12 414 14 HOH HOH . C 3 HOH A 13 415 15 HOH HOH . C 3 HOH A 14 416 16 HOH HOH . C 3 HOH A 15 417 17 HOH HOH . C 3 HOH A 16 418 18 HOH HOH . C 3 HOH A 17 419 19 HOH HOH . C 3 HOH A 18 420 20 HOH HOH . C 3 HOH A 19 421 21 HOH HOH . C 3 HOH A 20 422 22 HOH HOH . C 3 HOH A 21 423 23 HOH HOH . C 3 HOH A 22 424 24 HOH HOH . C 3 HOH A 23 425 25 HOH HOH . C 3 HOH A 24 426 26 HOH HOH . C 3 HOH A 25 427 27 HOH HOH . C 3 HOH A 26 428 28 HOH HOH . C 3 HOH A 27 429 29 HOH HOH . C 3 HOH A 28 430 30 HOH HOH . C 3 HOH A 29 431 31 HOH HOH . C 3 HOH A 30 432 32 HOH HOH . C 3 HOH A 31 433 33 HOH HOH . C 3 HOH A 32 434 34 HOH HOH . C 3 HOH A 33 435 35 HOH HOH . C 3 HOH A 34 436 36 HOH HOH . C 3 HOH A 35 437 37 HOH HOH . C 3 HOH A 36 438 38 HOH HOH . C 3 HOH A 37 439 39 HOH HOH . C 3 HOH A 38 440 40 HOH HOH . C 3 HOH A 39 441 41 HOH HOH . C 3 HOH A 40 442 42 HOH HOH . C 3 HOH A 41 443 43 HOH HOH . C 3 HOH A 42 444 44 HOH HOH . C 3 HOH A 43 446 46 HOH HOH . C 3 HOH A 44 447 47 HOH HOH . C 3 HOH A 45 448 48 HOH HOH . C 3 HOH A 46 449 49 HOH HOH . C 3 HOH A 47 450 50 HOH HOH . C 3 HOH A 48 451 51 HOH HOH . C 3 HOH A 49 452 52 HOH HOH . C 3 HOH A 50 453 53 HOH HOH . C 3 HOH A 51 454 54 HOH HOH . C 3 HOH A 52 455 55 HOH HOH . C 3 HOH A 53 456 56 HOH HOH . C 3 HOH A 54 457 57 HOH HOH . C 3 HOH A 55 458 58 HOH HOH . C 3 HOH A 56 459 59 HOH HOH . C 3 HOH A 57 460 60 HOH HOH . C 3 HOH A 58 461 61 HOH HOH . C 3 HOH A 59 462 62 HOH HOH . C 3 HOH A 60 464 64 HOH HOH . C 3 HOH A 61 466 66 HOH HOH . C 3 HOH A 62 467 67 HOH HOH . C 3 HOH A 63 468 68 HOH HOH . C 3 HOH A 64 469 69 HOH HOH . C 3 HOH A 65 470 70 HOH HOH . C 3 HOH A 66 471 71 HOH HOH . C 3 HOH A 67 472 72 HOH HOH . C 3 HOH A 68 473 73 HOH HOH . C 3 HOH A 69 474 74 HOH HOH . C 3 HOH A 70 475 75 HOH HOH . C 3 HOH A 71 476 76 HOH HOH . C 3 HOH A 72 477 77 HOH HOH . C 3 HOH A 73 478 78 HOH HOH . C 3 HOH A 74 479 79 HOH HOH . C 3 HOH A 75 480 80 HOH HOH . C 3 HOH A 76 481 81 HOH HOH . C 3 HOH A 77 482 82 HOH HOH . C 3 HOH A 78 483 83 HOH HOH . C 3 HOH A 79 484 84 HOH HOH . C 3 HOH A 80 485 85 HOH HOH . C 3 HOH A 81 486 86 HOH HOH . C 3 HOH A 82 487 87 HOH HOH . C 3 HOH A 83 488 88 HOH HOH . C 3 HOH A 84 489 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 31.378 25.685 13.295 1 39.92 ? PA NDP 350 A 1 HETATM 2 O O1A NDP . . . B 2 31.601 25.112 11.921 1 40.37 ? O1A NDP 350 A 1 HETATM 3 O O2A NDP . . . B 2 32.127 25.087 14.439 1 43.08 ? O2A NDP 350 A 1 HETATM 4 O O5B NDP . . . B 2 29.74 25.667 13.54 1 45.66 ? O5B NDP 350 A 1 HETATM 5 C C5B NDP . . . B 2 28.803 25.387 12.475 1 45.22 ? C5B NDP 350 A 1 HETATM 6 C C4B NDP . . . B 2 27.915 24.283 12.982 1 44.58 ? C4B NDP 350 A 1 HETATM 7 O O4B NDP . . . B 2 26.758 24.238 12.121 1 45.73 ? O4B NDP 350 A 1 HETATM 8 C C3B NDP . . . B 2 28.57 22.93 12.915 1 46.9 ? C3B NDP 350 A 1 HETATM 9 O O3B NDP . . . B 2 28.379 22.2 14.15 1 44.41 ? O3B NDP 350 A 1 HETATM 10 C C2B NDP . . . B 2 27.873 22.251 11.797 1 50.09 ? C2B NDP 350 A 1 HETATM 11 O O2B NDP . . . B 2 27.749 20.846 12.037 1 57.56 ? O2B NDP 350 A 1 HETATM 12 C C1B NDP . . . B 2 26.505 22.869 11.776 1 46.31 ? C1B NDP 350 A 1 HETATM 13 N N9A NDP . . . B 2 25.904 22.762 10.41 1 43.32 ? N9A NDP 350 A 1 HETATM 14 C C8A NDP . . . B 2 26.37 23.307 9.205 1 41.14 ? C8A NDP 350 A 1 HETATM 15 N N7A NDP . . . B 2 25.604 22.998 8.183 1 39.98 ? N7A NDP 350 A 1 HETATM 16 C C5A NDP . . . B 2 24.577 22.209 8.729 1 41.32 ? C5A NDP 350 A 1 HETATM 17 C C6A NDP . . . B 2 23.458 21.57 8.143 1 39.28 ? C6A NDP 350 A 1 HETATM 18 N N6A NDP . . . B 2 23.22 21.652 6.839 1 38.37 ? N6A NDP 350 A 1 HETATM 19 N N1A NDP . . . B 2 22.619 20.854 8.96 1 37.1 ? N1A NDP 350 A 1 HETATM 20 C C2A NDP . . . B 2 22.878 20.771 10.285 1 35.41 ? C2A NDP 350 A 1 HETATM 21 N N3A NDP . . . B 2 23.906 21.334 10.921 1 39.29 ? N3A NDP 350 A 1 HETATM 22 C C4A NDP . . . B 2 24.736 22.052 10.071 1 42.99 ? C4A NDP 350 A 1 HETATM 23 O O3 NDP . . . B 2 31.556 27.288 13.242 1 44.66 ? O3 NDP 350 A 1 HETATM 24 P PN NDP . . . B 2 31.582 28.531 14.298 1 43.69 ? PN NDP 350 A 1 HETATM 25 O O1N NDP . . . B 2 33.062 28.877 14.499 1 49.09 ? O1N NDP 350 A 1 HETATM 26 O O2N NDP . . . B 2 30.824 28.053 15.546 1 44.22 ? O2N NDP 350 A 1 HETATM 27 O O5D NDP . . . B 2 30.825 29.778 13.588 1 49.81 ? O5D NDP 350 A 1 HETATM 28 C C5D NDP . . . B 2 29.393 30.023 13.765 1 49.7 ? C5D NDP 350 A 1 HETATM 29 C C4D NDP . . . B 2 29.117 31.49 13.397 1 52.69 ? C4D NDP 350 A 1 HETATM 30 O O4D NDP . . . B 2 29.878 32.322 14.321 1 51.5 ? O4D NDP 350 A 1 HETATM 31 C C3D NDP . . . B 2 29.67 31.869 12.017 1 53.64 ? C3D NDP 350 A 1 HETATM 32 O O3D NDP . . . B 2 28.765 31.573 10.919 1 51.66 ? O3D NDP 350 A 1 HETATM 33 C C2D NDP . . . B 2 29.951 33.358 12.131 1 54.32 ? C2D NDP 350 A 1 HETATM 34 O O2D NDP . . . B 2 28.803 34.072 11.689 1 58.59 ? O2D NDP 350 A 1 HETATM 35 C C1D NDP . . . B 2 30.257 33.55 13.67 1 53.87 ? C1D NDP 350 A 1 HETATM 36 N N1N NDP . . . B 2 31.701 33.821 13.853 1 53.91 ? N1N NDP 350 A 1 HETATM 37 C C2N NDP . . . B 2 32.548 32.699 13.879 1 55.72 ? C2N NDP 350 A 1 HETATM 38 C C3N NDP . . . B 2 33.904 32.883 14.335 1 57.36 ? C3N NDP 350 A 1 HETATM 39 C C7N NDP . . . B 2 34.932 31.902 13.841 1 57.68 ? C7N NDP 350 A 1 HETATM 40 O O7N NDP . . . B 2 36.173 32.209 13.678 1 58.57 ? O7N NDP 350 A 1 HETATM 41 N N7N NDP . . . B 2 34.582 30.62 13.539 1 56.32 ? N7N NDP 350 A 1 HETATM 42 C C4N NDP . . . B 2 34.388 34.223 14.153 1 57.26 ? C4N NDP 350 A 1 HETATM 43 C C5N NDP . . . B 2 33.577 35.299 14.101 1 55.62 ? C5N NDP 350 A 1 HETATM 44 C C6N NDP . . . B 2 32.217 35.102 13.986 1 56.29 ? C6N NDP 350 A 1 HETATM 45 P P2B NDP . . . B 2 28.778 19.751 11.391 1 61.04 ? P2B NDP 350 A 1 HETATM 46 O O1X NDP . . . B 2 30.173 20.26 11.72 1 63.55 ? O1X NDP 350 A 1 HETATM 47 O O2X NDP . . . B 2 28.332 18.492 12.112 1 66.12 ? O2X NDP 350 A 1 HETATM 48 O O3X NDP . . . B 2 28.49 19.771 9.895 1 62.71 ? O3X NDP 350 A 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #