data_1BT4 # _model_server_result.job_id RqqTC5dozU5x9MvOuVHFwQ _model_server_result.datetime_utc '2025-02-26 03:23:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":363}' # _entry.id 1BT4 # _exptl.entry_id 1BT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.67 _cell.angle_gamma 90 _cell.entry_id 1BT4 _cell.length_a 93.323 _cell.length_b 92.876 _cell.length_c 45.499 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 196 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 197 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 363 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.461 _struct_conn.pdbx_value_order doub # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 1BT4 _atom_sites.fract_transf_matrix[1][1] 0.010715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003209 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 363 363 PLP PLP . C 3 HOH A 1 364 1 HOH HOH . C 3 HOH A 2 365 2 HOH HOH . C 3 HOH A 3 366 3 HOH HOH . C 3 HOH A 4 367 4 HOH HOH . C 3 HOH A 5 368 5 HOH HOH . C 3 HOH A 6 369 6 HOH HOH . C 3 HOH A 7 370 7 HOH HOH . C 3 HOH A 8 371 8 HOH HOH . C 3 HOH A 9 372 9 HOH HOH . C 3 HOH A 10 373 10 HOH HOH . C 3 HOH A 11 374 11 HOH HOH . C 3 HOH A 12 375 12 HOH HOH . C 3 HOH A 13 376 13 HOH HOH . C 3 HOH A 14 377 14 HOH HOH . C 3 HOH A 15 378 15 HOH HOH . C 3 HOH A 16 379 16 HOH HOH . C 3 HOH A 17 380 17 HOH HOH . C 3 HOH A 18 381 18 HOH HOH . C 3 HOH A 19 382 19 HOH HOH . C 3 HOH A 20 383 20 HOH HOH . C 3 HOH A 21 384 21 HOH HOH . C 3 HOH A 22 385 22 HOH HOH . C 3 HOH A 23 386 23 HOH HOH . C 3 HOH A 24 387 24 HOH HOH . C 3 HOH A 25 388 25 HOH HOH . C 3 HOH A 26 389 26 HOH HOH . C 3 HOH A 27 390 27 HOH HOH . C 3 HOH A 28 391 28 HOH HOH . C 3 HOH A 29 392 29 HOH HOH . C 3 HOH A 30 393 30 HOH HOH . C 3 HOH A 31 394 31 HOH HOH . C 3 HOH A 32 395 32 HOH HOH . C 3 HOH A 33 396 33 HOH HOH . C 3 HOH A 34 397 34 HOH HOH . C 3 HOH A 35 398 35 HOH HOH . C 3 HOH A 36 399 36 HOH HOH . C 3 HOH A 37 400 37 HOH HOH . C 3 HOH A 38 401 38 HOH HOH . C 3 HOH A 39 402 39 HOH HOH . C 3 HOH A 40 403 40 HOH HOH . C 3 HOH A 41 404 41 HOH HOH . C 3 HOH A 42 405 42 HOH HOH . C 3 HOH A 43 406 43 HOH HOH . C 3 HOH A 44 407 44 HOH HOH . C 3 HOH A 45 408 45 HOH HOH . C 3 HOH A 46 409 46 HOH HOH . C 3 HOH A 47 410 47 HOH HOH . C 3 HOH A 48 411 48 HOH HOH . C 3 HOH A 49 412 49 HOH HOH . C 3 HOH A 50 413 50 HOH HOH . C 3 HOH A 51 414 51 HOH HOH . C 3 HOH A 52 415 52 HOH HOH . C 3 HOH A 53 416 53 HOH HOH . C 3 HOH A 54 417 54 HOH HOH . C 3 HOH A 55 418 55 HOH HOH . C 3 HOH A 56 419 56 HOH HOH . C 3 HOH A 57 420 57 HOH HOH . C 3 HOH A 58 421 58 HOH HOH . C 3 HOH A 59 422 59 HOH HOH . C 3 HOH A 60 423 60 HOH HOH . C 3 HOH A 61 424 61 HOH HOH . C 3 HOH A 62 425 62 HOH HOH . C 3 HOH A 63 426 63 HOH HOH . C 3 HOH A 64 427 64 HOH HOH . C 3 HOH A 65 428 65 HOH HOH . C 3 HOH A 66 429 66 HOH HOH . C 3 HOH A 67 430 67 HOH HOH . C 3 HOH A 68 431 68 HOH HOH . C 3 HOH A 69 432 69 HOH HOH . C 3 HOH A 70 433 70 HOH HOH . C 3 HOH A 71 434 71 HOH HOH . C 3 HOH A 72 435 72 HOH HOH . C 3 HOH A 73 436 73 HOH HOH . C 3 HOH A 74 437 74 HOH HOH . C 3 HOH A 75 438 75 HOH HOH . C 3 HOH A 76 439 76 HOH HOH . C 3 HOH A 77 440 77 HOH HOH . C 3 HOH A 78 441 78 HOH HOH . C 3 HOH A 79 442 79 HOH HOH . C 3 HOH A 80 443 80 HOH HOH . C 3 HOH A 81 444 81 HOH HOH . C 3 HOH A 82 445 82 HOH HOH . C 3 HOH A 83 446 83 HOH HOH . C 3 HOH A 84 447 84 HOH HOH . C 3 HOH A 85 448 85 HOH HOH . C 3 HOH A 86 449 86 HOH HOH . C 3 HOH A 87 450 87 HOH HOH . C 3 HOH A 88 451 88 HOH HOH . C 3 HOH A 89 452 89 HOH HOH . C 3 HOH A 90 453 90 HOH HOH . C 3 HOH A 91 454 91 HOH HOH . C 3 HOH A 92 455 92 HOH HOH . C 3 HOH A 93 456 93 HOH HOH . C 3 HOH A 94 457 94 HOH HOH . C 3 HOH A 95 458 95 HOH HOH . C 3 HOH A 96 459 96 HOH HOH . C 3 HOH A 97 460 97 HOH HOH . C 3 HOH A 98 461 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 14.142 -1.932 5.354 1 2 ? N1 PLP 363 A 1 HETATM 2 C C2 PLP . . . B 2 14.902 -2.966 5.793 1 2 ? C2 PLP 363 A 1 HETATM 3 C C2A PLP . . . B 2 15.811 -2.757 6.964 1 2 ? C2A PLP 363 A 1 HETATM 4 C C3 PLP . . . B 2 14.782 -4.189 5.122 1 2 ? C3 PLP 363 A 1 HETATM 5 O O3 PLP . . . B 2 15.53 -5.235 5.503 1 2 ? O3 PLP 363 A 1 HETATM 6 C C4 PLP . . . B 2 13.896 -4.319 4.036 1 2 ? C4 PLP 363 A 1 HETATM 7 C C4A PLP . . . B 2 13.706 -5.688 3.425 1 2 ? C4A PLP 363 A 1 HETATM 8 C C5 PLP . . . B 2 13.138 -3.184 3.611 1 2 ? C5 PLP 363 A 1 HETATM 9 C C6 PLP . . . B 2 13.289 -2.012 4.304 1 2 ? C6 PLP 363 A 1 HETATM 10 C C5A PLP . . . B 2 12.217 -3.17 2.381 1 2 ? C5A PLP 363 A 1 HETATM 11 O O4P PLP . . . B 2 11.156 -4.113 2.536 1 2 ? O4P PLP 363 A 1 HETATM 12 P P PLP . . . B 2 10.108 -4.222 1.314 1 2 ? P PLP 363 A 1 HETATM 13 O O1P PLP . . . B 2 8.976 -5.093 1.795 1 2 ? O1P PLP 363 A 1 HETATM 14 O O2P PLP . . . B 2 10.894 -4.657 0.113 1 2 ? O2P PLP 363 A 1 HETATM 15 O O3P PLP . . . B 2 9.574 -2.772 1.069 1 2 ? O3P PLP 363 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #