data_1BTY # _model_server_result.job_id CMO-K92-zEQobfiIJ5Yn_g _model_server_result.datetime_utc '2025-03-09 03:44:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":246}' # _entry.id 1BTY # _exptl.entry_id 1BTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BTY _cell.length_a 54.84 _cell.length_b 58.61 _cell.length_c 67.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 22 1_555 A SG CYS 143 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 A SG CYS 31 A CYS 42 1_555 A SG CYS 47 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf3 A SG CYS 115 A CYS 128 1_555 A SG CYS 216 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 122 A CYS 136 1_555 A SG CYS 189 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 154 A CYS 168 1_555 A SG CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 A SG CYS 179 A CYS 191 1_555 A SG CYS 203 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc1 A OE1 GLU 58 A GLU 70 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A O ASN 60 A ASN 72 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 A O VAL 63 A VAL 75 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 A OE2 GLU 68 A GLU 80 1_555 B CA CA . A CA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc5 B CA CA . A CA 247 1_555 D O HOH . A HOH 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B CA CA . A CA 247 1_555 D O HOH . A HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 1BTY _atom_sites.fract_transf_matrix[1][1] 0.018235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 247 247 CA CA . C 3 BEN A 1 246 246 BEN BEN . D 4 HOH A 1 248 248 HOH HOH . D 4 HOH A 2 249 249 HOH HOH . D 4 HOH A 3 250 250 HOH HOH . D 4 HOH A 4 251 251 HOH HOH . D 4 HOH A 5 252 252 HOH HOH . D 4 HOH A 6 253 253 HOH HOH . D 4 HOH A 7 254 254 HOH HOH . D 4 HOH A 8 255 255 HOH HOH . D 4 HOH A 9 256 256 HOH HOH . D 4 HOH A 10 257 257 HOH HOH . D 4 HOH A 11 258 258 HOH HOH . D 4 HOH A 12 259 259 HOH HOH . D 4 HOH A 13 260 260 HOH HOH . D 4 HOH A 14 261 261 HOH HOH . D 4 HOH A 15 262 262 HOH HOH . D 4 HOH A 16 263 263 HOH HOH . D 4 HOH A 17 264 264 HOH HOH . D 4 HOH A 18 265 265 HOH HOH . D 4 HOH A 19 266 266 HOH HOH . D 4 HOH A 20 267 267 HOH HOH . D 4 HOH A 21 268 268 HOH HOH . D 4 HOH A 22 269 269 HOH HOH . D 4 HOH A 23 270 270 HOH HOH . D 4 HOH A 24 271 271 HOH HOH . D 4 HOH A 25 272 272 HOH HOH . D 4 HOH A 26 273 273 HOH HOH . D 4 HOH A 27 274 274 HOH HOH . D 4 HOH A 28 275 275 HOH HOH . D 4 HOH A 29 276 276 HOH HOH . D 4 HOH A 30 277 277 HOH HOH . D 4 HOH A 31 278 278 HOH HOH . D 4 HOH A 32 279 279 HOH HOH . D 4 HOH A 33 280 280 HOH HOH . D 4 HOH A 34 281 281 HOH HOH . D 4 HOH A 35 282 282 HOH HOH . D 4 HOH A 36 283 283 HOH HOH . D 4 HOH A 37 284 284 HOH HOH . D 4 HOH A 38 285 285 HOH HOH . D 4 HOH A 39 286 286 HOH HOH . D 4 HOH A 40 287 287 HOH HOH . D 4 HOH A 41 288 288 HOH HOH . D 4 HOH A 42 289 289 HOH HOH . D 4 HOH A 43 290 290 HOH HOH . D 4 HOH A 44 291 291 HOH HOH . D 4 HOH A 45 292 292 HOH HOH . D 4 HOH A 46 293 293 HOH HOH . D 4 HOH A 47 294 294 HOH HOH . D 4 HOH A 48 295 295 HOH HOH . D 4 HOH A 49 296 296 HOH HOH . D 4 HOH A 50 297 297 HOH HOH . D 4 HOH A 51 298 298 HOH HOH . D 4 HOH A 52 299 299 HOH HOH . D 4 HOH A 53 300 300 HOH HOH . D 4 HOH A 54 301 301 HOH HOH . D 4 HOH A 55 302 302 HOH HOH . D 4 HOH A 56 303 303 HOH HOH . D 4 HOH A 57 304 304 HOH HOH . D 4 HOH A 58 305 305 HOH HOH . D 4 HOH A 59 306 306 HOH HOH . D 4 HOH A 60 307 307 HOH HOH . D 4 HOH A 61 308 308 HOH HOH . D 4 HOH A 62 309 309 HOH HOH . D 4 HOH A 63 310 310 HOH HOH . D 4 HOH A 64 311 311 HOH HOH . D 4 HOH A 65 312 312 HOH HOH . D 4 HOH A 66 313 313 HOH HOH . D 4 HOH A 67 314 314 HOH HOH . D 4 HOH A 68 315 315 HOH HOH . D 4 HOH A 69 316 316 HOH HOH . D 4 HOH A 70 317 317 HOH HOH . D 4 HOH A 71 318 318 HOH HOH . D 4 HOH A 72 319 319 HOH HOH . D 4 HOH A 73 320 320 HOH HOH . D 4 HOH A 74 321 321 HOH HOH . D 4 HOH A 75 322 322 HOH HOH . D 4 HOH A 76 323 323 HOH HOH . D 4 HOH A 77 324 324 HOH HOH . D 4 HOH A 78 325 325 HOH HOH . D 4 HOH A 79 326 326 HOH HOH . D 4 HOH A 80 327 327 HOH HOH . D 4 HOH A 81 328 328 HOH HOH . D 4 HOH A 82 329 329 HOH HOH . D 4 HOH A 83 330 330 HOH HOH . D 4 HOH A 84 331 331 HOH HOH . D 4 HOH A 85 332 332 HOH HOH . D 4 HOH A 86 333 333 HOH HOH . D 4 HOH A 87 334 334 HOH HOH . D 4 HOH A 88 335 335 HOH HOH . D 4 HOH A 89 336 336 HOH HOH . D 4 HOH A 90 337 337 HOH HOH . D 4 HOH A 91 338 338 HOH HOH . D 4 HOH A 92 339 339 HOH HOH . D 4 HOH A 93 340 340 HOH HOH . D 4 HOH A 94 341 341 HOH HOH . D 4 HOH A 95 342 342 HOH HOH . D 4 HOH A 96 343 343 HOH HOH . D 4 HOH A 97 344 344 HOH HOH . D 4 HOH A 98 345 345 HOH HOH . D 4 HOH A 99 346 346 HOH HOH . D 4 HOH A 100 347 347 HOH HOH . D 4 HOH A 101 348 348 HOH HOH . D 4 HOH A 102 349 349 HOH HOH . D 4 HOH A 103 350 350 HOH HOH . D 4 HOH A 104 351 351 HOH HOH . D 4 HOH A 105 352 352 HOH HOH . D 4 HOH A 106 353 353 HOH HOH . D 4 HOH A 107 354 354 HOH HOH . D 4 HOH A 108 355 355 HOH HOH . D 4 HOH A 109 356 356 HOH HOH . D 4 HOH A 110 357 357 HOH HOH . D 4 HOH A 111 358 358 HOH HOH . D 4 HOH A 112 359 359 HOH HOH . D 4 HOH A 113 360 360 HOH HOH . D 4 HOH A 114 361 361 HOH HOH . D 4 HOH A 115 362 362 HOH HOH . D 4 HOH A 116 363 363 HOH HOH . D 4 HOH A 117 364 364 HOH HOH . D 4 HOH A 118 365 365 HOH HOH . D 4 HOH A 119 366 366 HOH HOH . D 4 HOH A 120 367 367 HOH HOH . D 4 HOH A 121 368 368 HOH HOH . D 4 HOH A 122 369 369 HOH HOH . D 4 HOH A 123 370 370 HOH HOH . D 4 HOH A 124 371 371 HOH HOH . D 4 HOH A 125 372 372 HOH HOH . D 4 HOH A 126 373 373 HOH HOH . D 4 HOH A 127 374 374 HOH HOH . D 4 HOH A 128 375 375 HOH HOH . D 4 HOH A 129 376 376 HOH HOH . D 4 HOH A 130 377 377 HOH HOH . D 4 HOH A 131 378 378 HOH HOH . D 4 HOH A 132 379 379 HOH HOH . D 4 HOH A 133 380 380 HOH HOH . D 4 HOH A 134 381 381 HOH HOH . D 4 HOH A 135 382 382 HOH HOH . D 4 HOH A 136 383 383 HOH HOH . D 4 HOH A 137 384 384 HOH HOH . D 4 HOH A 138 385 385 HOH HOH . D 4 HOH A 139 386 386 HOH HOH . D 4 HOH A 140 387 387 HOH HOH . D 4 HOH A 141 388 388 HOH HOH . D 4 HOH A 142 389 389 HOH HOH . D 4 HOH A 143 390 390 HOH HOH . D 4 HOH A 144 391 391 HOH HOH . D 4 HOH A 145 392 392 HOH HOH . D 4 HOH A 146 393 393 HOH HOH . D 4 HOH A 147 394 394 HOH HOH . D 4 HOH A 148 395 395 HOH HOH . D 4 HOH A 149 396 396 HOH HOH . D 4 HOH A 150 397 397 HOH HOH . D 4 HOH A 151 398 398 HOH HOH . D 4 HOH A 152 399 399 HOH HOH . D 4 HOH A 153 400 400 HOH HOH . D 4 HOH A 154 401 401 HOH HOH . D 4 HOH A 155 402 402 HOH HOH . D 4 HOH A 156 404 404 HOH HOH . D 4 HOH A 157 406 406 HOH HOH . D 4 HOH A 158 407 407 HOH HOH . D 4 HOH A 159 408 408 HOH HOH . D 4 HOH A 160 409 409 HOH HOH . D 4 HOH A 161 410 410 HOH HOH . D 4 HOH A 162 411 411 HOH HOH . D 4 HOH A 163 412 412 HOH HOH . D 4 HOH A 164 413 413 HOH HOH . D 4 HOH A 165 414 414 HOH HOH . D 4 HOH A 166 415 415 HOH HOH . D 4 HOH A 167 417 417 HOH HOH . D 4 HOH A 168 418 418 HOH HOH . D 4 HOH A 169 419 419 HOH HOH . D 4 HOH A 170 420 420 HOH HOH . D 4 HOH A 171 421 421 HOH HOH . D 4 HOH A 172 422 422 HOH HOH . D 4 HOH A 173 423 423 HOH HOH . D 4 HOH A 174 426 426 HOH HOH . D 4 HOH A 175 427 427 HOH HOH . D 4 HOH A 176 430 430 HOH HOH . D 4 HOH A 177 431 431 HOH HOH . D 4 HOH A 178 432 432 HOH HOH . D 4 HOH A 179 434 434 HOH HOH . D 4 HOH A 180 435 435 HOH HOH . D 4 HOH A 181 436 436 HOH HOH . D 4 HOH A 182 438 438 HOH HOH . D 4 HOH A 183 440 440 HOH HOH . D 4 HOH A 184 441 441 HOH HOH . D 4 HOH A 185 442 442 HOH HOH . D 4 HOH A 186 443 443 HOH HOH . D 4 HOH A 187 444 444 HOH HOH . D 4 HOH A 188 445 445 HOH HOH . D 4 HOH A 189 446 446 HOH HOH . D 4 HOH A 190 447 447 HOH HOH . D 4 HOH A 191 448 448 HOH HOH . D 4 HOH A 192 449 449 HOH HOH . D 4 HOH A 193 450 450 HOH HOH . D 4 HOH A 194 451 451 HOH HOH . D 4 HOH A 195 452 452 HOH HOH . D 4 HOH A 196 453 453 HOH HOH . D 4 HOH A 197 454 454 HOH HOH . D 4 HOH A 198 455 455 HOH HOH . D 4 HOH A 199 456 456 HOH HOH . D 4 HOH A 200 457 457 HOH HOH . D 4 HOH A 201 458 458 HOH HOH . D 4 HOH A 202 459 459 HOH HOH . D 4 HOH A 203 465 465 HOH HOH . D 4 HOH A 204 470 470 HOH HOH . D 4 HOH A 205 477 477 HOH HOH . D 4 HOH A 206 480 480 HOH HOH . D 4 HOH A 207 482 482 HOH HOH . D 4 HOH A 208 484 484 HOH HOH . D 4 HOH A 209 486 486 HOH HOH . D 4 HOH A 210 488 488 HOH HOH . D 4 HOH A 211 490 490 HOH HOH . D 4 HOH A 212 492 492 HOH HOH . D 4 HOH A 213 494 494 HOH HOH . D 4 HOH A 214 495 495 HOH HOH . D 4 HOH A 215 496 496 HOH HOH . D 4 HOH A 216 497 497 HOH HOH . D 4 HOH A 217 498 498 HOH HOH . D 4 HOH A 218 499 499 HOH HOH . D 4 HOH A 219 500 500 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . C 3 29.153 14.938 16.613 1 16.12 ? C1 BEN 246 A 1 HETATM 2 C C2 BEN . . . C 3 28.717 15.569 17.779 1 17.32 ? C2 BEN 246 A 1 HETATM 3 C C3 BEN . . . C 3 28.369 14.875 18.919 1 18.22 ? C3 BEN 246 A 1 HETATM 4 C C4 BEN . . . C 3 28.445 13.515 18.928 1 18.14 ? C4 BEN 246 A 1 HETATM 5 C C5 BEN . . . C 3 28.868 12.861 17.799 1 17.89 ? C5 BEN 246 A 1 HETATM 6 C C6 BEN . . . C 3 29.219 13.554 16.66 1 18.38 ? C6 BEN 246 A 1 HETATM 7 C C BEN . . . C 3 29.498 15.648 15.457 1 14.71 ? C BEN 246 A 1 HETATM 8 N N1 BEN . . . C 3 30.221 15.046 14.532 1 15.86 ? N1 BEN 246 A 1 HETATM 9 N N2 BEN . . . C 3 29.094 16.893 15.322 1 13.9 ? N2 BEN 246 A 1 HETATM 10 H H2 BEN . . . C 3 28.645 16.646 17.804 1 18.29 ? H2 BEN 246 A 1 HETATM 11 H H3 BEN . . . C 3 28.035 15.401 19.802 1 17.23 ? H3 BEN 246 A 1 HETATM 12 H H4 BEN . . . C 3 28.176 12.96 19.813 1 18.19 ? H4 BEN 246 A 1 HETATM 13 H H5 BEN . . . C 3 28.921 11.784 17.798 1 18.8 ? H5 BEN 246 A 1 HETATM 14 H H6 BEN . . . C 3 29.549 12.998 15.794 1 17.56 ? H6 BEN 246 A 1 HETATM 15 H HN21 BEN . . . C 3 28.577 17.332 16.077 1 14.17 ? HN21 BEN 246 A 1 HETATM 16 H HN22 BEN . . . C 3 29.314 17.466 14.547 1 14.11 ? HN22 BEN 246 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #