data_1BUG # _model_server_result.job_id 6Z_QKfkIRr-sTfQFM_jWow _model_server_result.datetime_utc '2024-11-30 04:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 1BUG # _exptl.entry_id 1BUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.217 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-PHENYLTHIOUREA _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.5 _cell.angle_gamma 90 _cell.entry_id 1BUG _cell.length_a 45.82 _cell.length_b 164.75 _cell.length_c 52.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 89 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 B SG CYS 11 B CYS 11 1_555 B SG CYS 28 B CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 27 B CYS 27 1_555 B SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A SG CYS 92 A CYS 92 1_555 A CE1 HIS 109 A HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale2 B SG CYS 92 B CYS 92 1_555 B CE1 HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc1 A NE2 HIS 88 A HIS 88 1_555 C CU CU . A CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc2 A NE2 HIS 109 A HIS 109 1_555 C CU CU . A CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc3 A NE2 HIS 118 A HIS 118 1_555 C CU CU . A CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc4 A NE2 HIS 240 A HIS 240 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 A NE2 HIS 244 A HIS 244 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc6 A NE2 HIS 274 A HIS 274 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc7 C CU CU . A CU 500 1_555 E S1 URS . A URS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 D CU CU . A CU 501 1_555 E S1 URS . A URS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc9 D CU CU . A CU 501 1_555 E N1 URS . A URS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc10 B NE2 HIS 88 B HIS 88 1_555 F CU CU . B CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc11 B NE2 HIS 109 B HIS 109 1_555 F CU CU . B CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc12 B NE2 HIS 118 B HIS 118 1_555 F CU CU . B CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc13 B NE2 HIS 240 B HIS 240 1_555 G CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc14 B NE2 HIS 244 B HIS 244 1_555 G CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc15 B NE2 HIS 274 B HIS 274 1_555 G CU CU . B CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc16 F CU CU . B CU 500 1_555 H S1 URS . B URS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc17 G CU CU . B CU 501 1_555 H S1 URS . B URS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc18 G CU CU . B CU 501 1_555 H N1 URS . B URS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'C7 H8 N2 S' _chem_comp.formula_weight 152.217 _chem_comp.id URS _chem_comp.mon_nstd_flag . _chem_comp.name N-PHENYLTHIOUREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C3 URS sing 358 n n N1 C7 URS sing 359 n n N1 H1N URS sing 360 n n N2 C7 URS sing 361 n n N2 H2N2 URS sing 362 n n N2 H1N2 URS sing 363 n n C1 C2 URS doub 364 n y C1 C6 URS sing 365 n y C1 H1 URS sing 366 n n C2 C3 URS sing 367 n y C2 H2 URS sing 368 n n C3 C4 URS doub 369 n y C4 C5 URS sing 370 n y C4 H4 URS sing 371 n n C5 C6 URS doub 372 n y C5 H5 URS sing 373 n n C6 H6 URS sing 374 n n C7 S1 URS doub 375 n n # _atom_sites.entry_id 1BUG _atom_sites.fract_transf_matrix[1][1] 0.021825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002873 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 500 500 CU CU . D 2 CU A 1 501 501 CU CU . E 3 URS A 1 1002 1002 URS URS . F 2 CU B 1 500 500 CU CU . G 2 CU B 1 501 501 CU CU . H 3 URS B 1 1002 1002 URS URS . I 4 HOH A 1 1003 1 HOH HOH . I 4 HOH A 2 1004 2 HOH HOH . I 4 HOH A 3 1005 3 HOH HOH . I 4 HOH A 4 1006 4 HOH HOH . I 4 HOH A 5 1007 5 HOH HOH . I 4 HOH A 6 1008 6 HOH HOH . I 4 HOH A 7 1009 7 HOH HOH . I 4 HOH A 8 1010 8 HOH HOH . I 4 HOH A 9 1011 9 HOH HOH . I 4 HOH A 10 1012 10 HOH HOH . I 4 HOH A 11 1013 11 HOH HOH . I 4 HOH A 12 1014 12 HOH HOH . I 4 HOH A 13 1015 13 HOH HOH . I 4 HOH A 14 1016 14 HOH HOH . I 4 HOH A 15 1017 15 HOH HOH . I 4 HOH A 16 1018 16 HOH HOH . I 4 HOH A 17 1019 17 HOH HOH . I 4 HOH A 18 1020 18 HOH HOH . I 4 HOH A 19 1021 19 HOH HOH . I 4 HOH A 20 1022 20 HOH HOH . I 4 HOH A 21 1023 21 HOH HOH . I 4 HOH A 22 1024 22 HOH HOH . I 4 HOH A 23 1025 23 HOH HOH . I 4 HOH A 24 1026 24 HOH HOH . I 4 HOH A 25 1027 25 HOH HOH . I 4 HOH A 26 1028 26 HOH HOH . I 4 HOH A 27 1029 27 HOH HOH . I 4 HOH A 28 1030 28 HOH HOH . I 4 HOH A 29 1031 29 HOH HOH . I 4 HOH A 30 1032 30 HOH HOH . I 4 HOH A 31 1033 31 HOH HOH . I 4 HOH A 32 1034 32 HOH HOH . I 4 HOH A 33 1035 33 HOH HOH . I 4 HOH A 34 1036 34 HOH HOH . I 4 HOH A 35 1037 35 HOH HOH . I 4 HOH A 36 1038 36 HOH HOH . I 4 HOH A 37 1039 37 HOH HOH . I 4 HOH A 38 1040 38 HOH HOH . I 4 HOH A 39 1041 39 HOH HOH . I 4 HOH A 40 1042 40 HOH HOH . I 4 HOH A 41 1043 41 HOH HOH . I 4 HOH A 42 1044 42 HOH HOH . I 4 HOH A 43 1045 43 HOH HOH . I 4 HOH A 44 1046 44 HOH HOH . I 4 HOH A 45 1047 45 HOH HOH . I 4 HOH A 46 1048 46 HOH HOH . I 4 HOH A 47 1049 47 HOH HOH . I 4 HOH A 48 1050 49 HOH HOH . I 4 HOH A 49 1051 51 HOH HOH . I 4 HOH A 50 1052 52 HOH HOH . I 4 HOH A 51 1053 53 HOH HOH . I 4 HOH A 52 1054 54 HOH HOH . I 4 HOH A 53 1055 55 HOH HOH . I 4 HOH A 54 1056 56 HOH HOH . I 4 HOH A 55 1057 57 HOH HOH . I 4 HOH A 56 1058 58 HOH HOH . I 4 HOH A 57 1059 59 HOH HOH . I 4 HOH A 58 1060 60 HOH HOH . I 4 HOH A 59 1061 61 HOH HOH . I 4 HOH A 60 1062 62 HOH HOH . I 4 HOH A 61 1063 63 HOH HOH . I 4 HOH A 62 1064 65 HOH HOH . I 4 HOH A 63 1065 66 HOH HOH . I 4 HOH A 64 1066 67 HOH HOH . I 4 HOH A 65 1067 68 HOH HOH . I 4 HOH A 66 1068 69 HOH HOH . I 4 HOH A 67 1069 70 HOH HOH . I 4 HOH A 68 1070 71 HOH HOH . I 4 HOH A 69 1071 73 HOH HOH . I 4 HOH A 70 1072 74 HOH HOH . I 4 HOH A 71 1073 75 HOH HOH . I 4 HOH A 72 1074 76 HOH HOH . I 4 HOH A 73 1075 77 HOH HOH . I 4 HOH A 74 1076 78 HOH HOH . I 4 HOH A 75 1077 79 HOH HOH . I 4 HOH A 76 1078 80 HOH HOH . I 4 HOH A 77 1079 81 HOH HOH . I 4 HOH A 78 1080 82 HOH HOH . I 4 HOH A 79 1081 83 HOH HOH . I 4 HOH A 80 1082 84 HOH HOH . I 4 HOH A 81 1083 85 HOH HOH . I 4 HOH A 82 1084 86 HOH HOH . I 4 HOH A 83 1085 87 HOH HOH . I 4 HOH A 84 1086 88 HOH HOH . I 4 HOH A 85 1087 91 HOH HOH . I 4 HOH A 86 1088 92 HOH HOH . I 4 HOH A 87 1089 93 HOH HOH . J 4 HOH B 1 1003 64 HOH HOH . J 4 HOH B 2 1004 89 HOH HOH . J 4 HOH B 3 1005 94 HOH HOH . J 4 HOH B 4 1006 95 HOH HOH . J 4 HOH B 5 1007 96 HOH HOH . J 4 HOH B 6 1008 97 HOH HOH . J 4 HOH B 7 1009 98 HOH HOH . J 4 HOH B 8 1010 99 HOH HOH . J 4 HOH B 9 1011 100 HOH HOH . J 4 HOH B 10 1012 101 HOH HOH . J 4 HOH B 11 1013 102 HOH HOH . J 4 HOH B 12 1014 103 HOH HOH . J 4 HOH B 13 1015 104 HOH HOH . J 4 HOH B 14 1016 105 HOH HOH . J 4 HOH B 15 1017 106 HOH HOH . J 4 HOH B 16 1018 107 HOH HOH . J 4 HOH B 17 1019 108 HOH HOH . J 4 HOH B 18 1020 109 HOH HOH . J 4 HOH B 19 1021 110 HOH HOH . J 4 HOH B 20 1022 111 HOH HOH . J 4 HOH B 21 1023 112 HOH HOH . J 4 HOH B 22 1024 113 HOH HOH . J 4 HOH B 23 1025 114 HOH HOH . J 4 HOH B 24 1026 115 HOH HOH . J 4 HOH B 25 1027 116 HOH HOH . J 4 HOH B 26 1028 117 HOH HOH . J 4 HOH B 27 1029 118 HOH HOH . J 4 HOH B 28 1030 119 HOH HOH . J 4 HOH B 29 1031 120 HOH HOH . J 4 HOH B 30 1032 121 HOH HOH . J 4 HOH B 31 1033 122 HOH HOH . J 4 HOH B 32 1034 123 HOH HOH . J 4 HOH B 33 1035 124 HOH HOH . J 4 HOH B 34 1036 125 HOH HOH . J 4 HOH B 35 1037 126 HOH HOH . J 4 HOH B 36 1038 127 HOH HOH . J 4 HOH B 37 1039 128 HOH HOH . J 4 HOH B 38 1040 129 HOH HOH . J 4 HOH B 39 1041 130 HOH HOH . J 4 HOH B 40 1042 131 HOH HOH . J 4 HOH B 41 1043 132 HOH HOH . J 4 HOH B 42 1044 133 HOH HOH . J 4 HOH B 43 1045 135 HOH HOH . J 4 HOH B 44 1046 136 HOH HOH . J 4 HOH B 45 1047 137 HOH HOH . J 4 HOH B 46 1048 138 HOH HOH . J 4 HOH B 47 1049 139 HOH HOH . J 4 HOH B 48 1050 140 HOH HOH . J 4 HOH B 49 1051 141 HOH HOH . J 4 HOH B 50 1052 142 HOH HOH . J 4 HOH B 51 1053 143 HOH HOH . J 4 HOH B 52 1054 144 HOH HOH . J 4 HOH B 53 1055 145 HOH HOH . J 4 HOH B 54 1056 146 HOH HOH . J 4 HOH B 55 1057 147 HOH HOH . J 4 HOH B 56 1058 148 HOH HOH . J 4 HOH B 57 1059 149 HOH HOH . J 4 HOH B 58 1060 150 HOH HOH . J 4 HOH B 59 1061 151 HOH HOH . J 4 HOH B 60 1062 152 HOH HOH . J 4 HOH B 61 1063 153 HOH HOH . J 4 HOH B 62 1064 154 HOH HOH . J 4 HOH B 63 1065 155 HOH HOH . J 4 HOH B 64 1066 156 HOH HOH . J 4 HOH B 65 1067 157 HOH HOH . J 4 HOH B 66 1068 158 HOH HOH . J 4 HOH B 67 1069 159 HOH HOH . J 4 HOH B 68 1070 160 HOH HOH . J 4 HOH B 69 1071 161 HOH HOH . J 4 HOH B 70 1072 162 HOH HOH . J 4 HOH B 71 1073 163 HOH HOH . J 4 HOH B 72 1074 164 HOH HOH . J 4 HOH B 73 1075 165 HOH HOH . J 4 HOH B 74 1076 166 HOH HOH . J 4 HOH B 75 1077 167 HOH HOH . J 4 HOH B 76 1078 168 HOH HOH . J 4 HOH B 77 1079 169 HOH HOH . J 4 HOH B 78 1080 170 HOH HOH . J 4 HOH B 79 1081 171 HOH HOH . J 4 HOH B 80 1082 172 HOH HOH . J 4 HOH B 81 1083 173 HOH HOH . J 4 HOH B 82 1084 174 HOH HOH . J 4 HOH B 83 1085 175 HOH HOH . J 4 HOH B 84 1086 176 HOH HOH . J 4 HOH B 85 1087 177 HOH HOH . J 4 HOH B 86 1088 178 HOH HOH . J 4 HOH B 87 1089 179 HOH HOH . J 4 HOH B 88 1090 180 HOH HOH . J 4 HOH B 89 1091 181 HOH HOH . J 4 HOH B 90 1092 182 HOH HOH . J 4 HOH B 91 1093 183 HOH HOH . J 4 HOH B 92 1094 184 HOH HOH . J 4 HOH B 93 1095 185 HOH HOH . J 4 HOH B 94 1096 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URS . . . H 3 36.322 137.358 45.474 1 11.37 ? N1 URS 1002 B 1 HETATM 2 N N2 URS . . . H 3 37.509 138.701 43.946 1 11.14 ? N2 URS 1002 B 1 HETATM 3 C C1 URS . . . H 3 38.104 136.01 48.396 1 4.45 ? C1 URS 1002 B 1 HETATM 4 C C2 URS . . . H 3 37.202 136.773 47.62 1 9.53 ? C2 URS 1002 B 1 HETATM 5 C C3 URS . . . H 3 37.163 136.668 46.183 1 7.6 ? C3 URS 1002 B 1 HETATM 6 C C4 URS . . . H 3 38.049 135.782 45.552 1 7.88 ? C4 URS 1002 B 1 HETATM 7 C C5 URS . . . H 3 38.953 135.009 46.329 1 9.18 ? C5 URS 1002 B 1 HETATM 8 C C6 URS . . . H 3 38.981 135.121 47.741 1 4.28 ? C6 URS 1002 B 1 HETATM 9 C C7 URS . . . H 3 36.413 138.032 44.196 1 11.31 ? C7 URS 1002 B 1 HETATM 10 S S1 URS . . . H 3 35.234 138.036 43.097 1 11.69 ? S1 URS 1002 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #