data_1BUN # _model_server_result.job_id LZpkBt6N7siDyVldhnRb9w _model_server_result.datetime_utc '2024-11-25 10:14:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":122}' # _entry.id 1BUN # _exptl.entry_id 1BUN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BUN _cell.length_a 52.6 _cell.length_b 52.6 _cell.length_c 177.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 B SG CYS 55 B CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 100 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 79 A CYS 79 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 7 B CYS 7 1_555 B SG CYS 57 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf9 B SG CYS 16 B CYS 16 1_555 B SG CYS 40 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 B SG CYS 32 B CYS 32 1_555 B SG CYS 53 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A O TYR 28 A TYR 28 1_555 C NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc2 A O GLY 30 A GLY 30 1_555 C NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A O GLY 32 A GLY 32 1_555 C NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A OD2 ASP 39 A ASP 39 1_555 D NA NA . A NA 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc5 A OD2 ASP 49 A ASP 49 1_555 C NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc6 A O GLU 105 A GLU 105 1_555 D NA NA . A NA 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BUN _atom_sites.fract_transf_matrix[1][1] 0.019011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 121 87 NA NA . D 3 NA A 1 122 88 NA NA . E 4 HOH A 1 123 4 HOH HOH . E 4 HOH A 2 124 7 HOH HOH . E 4 HOH A 3 125 9 HOH HOH . E 4 HOH A 4 126 10 HOH HOH . E 4 HOH A 5 127 11 HOH HOH . E 4 HOH A 6 128 14 HOH HOH . E 4 HOH A 7 129 15 HOH HOH . E 4 HOH A 8 130 16 HOH HOH . E 4 HOH A 9 131 18 HOH HOH . E 4 HOH A 10 132 19 HOH HOH . E 4 HOH A 11 133 20 HOH HOH . E 4 HOH A 12 134 21 HOH HOH . E 4 HOH A 13 135 22 HOH HOH . E 4 HOH A 14 136 25 HOH HOH . E 4 HOH A 15 137 26 HOH HOH . E 4 HOH A 16 138 27 HOH HOH . E 4 HOH A 17 139 28 HOH HOH . E 4 HOH A 18 140 29 HOH HOH . E 4 HOH A 19 141 31 HOH HOH . E 4 HOH A 20 142 32 HOH HOH . E 4 HOH A 21 143 33 HOH HOH . E 4 HOH A 22 144 34 HOH HOH . E 4 HOH A 23 145 37 HOH HOH . E 4 HOH A 24 146 38 HOH HOH . E 4 HOH A 25 147 39 HOH HOH . E 4 HOH A 26 148 40 HOH HOH . E 4 HOH A 27 149 41 HOH HOH . E 4 HOH A 28 150 42 HOH HOH . E 4 HOH A 29 151 43 HOH HOH . E 4 HOH A 30 152 44 HOH HOH . E 4 HOH A 31 153 45 HOH HOH . E 4 HOH A 32 154 46 HOH HOH . E 4 HOH A 33 155 47 HOH HOH . E 4 HOH A 34 156 48 HOH HOH . E 4 HOH A 35 157 49 HOH HOH . E 4 HOH A 36 158 50 HOH HOH . E 4 HOH A 37 159 52 HOH HOH . E 4 HOH A 38 160 53 HOH HOH . E 4 HOH A 39 161 56 HOH HOH . E 4 HOH A 40 162 60 HOH HOH . E 4 HOH A 41 163 61 HOH HOH . E 4 HOH A 42 164 63 HOH HOH . E 4 HOH A 43 165 67 HOH HOH . E 4 HOH A 44 166 68 HOH HOH . E 4 HOH A 45 167 69 HOH HOH . E 4 HOH A 46 168 71 HOH HOH . E 4 HOH A 47 169 72 HOH HOH . E 4 HOH A 48 170 74 HOH HOH . E 4 HOH A 49 171 77 HOH HOH . E 4 HOH A 50 172 78 HOH HOH . E 4 HOH A 51 173 80 HOH HOH . F 4 HOH B 1 62 1 HOH HOH . F 4 HOH B 2 63 2 HOH HOH . F 4 HOH B 3 64 3 HOH HOH . F 4 HOH B 4 65 5 HOH HOH . F 4 HOH B 5 66 6 HOH HOH . F 4 HOH B 6 67 8 HOH HOH . F 4 HOH B 7 68 12 HOH HOH . F 4 HOH B 8 69 13 HOH HOH . F 4 HOH B 9 70 17 HOH HOH . F 4 HOH B 10 71 23 HOH HOH . F 4 HOH B 11 72 24 HOH HOH . F 4 HOH B 12 73 30 HOH HOH . F 4 HOH B 13 74 35 HOH HOH . F 4 HOH B 14 75 36 HOH HOH . F 4 HOH B 15 76 51 HOH HOH . F 4 HOH B 16 77 54 HOH HOH . F 4 HOH B 17 78 55 HOH HOH . F 4 HOH B 18 79 57 HOH HOH . F 4 HOH B 19 80 58 HOH HOH . F 4 HOH B 20 81 59 HOH HOH . F 4 HOH B 21 82 62 HOH HOH . F 4 HOH B 22 83 64 HOH HOH . F 4 HOH B 23 84 65 HOH HOH . F 4 HOH B 24 85 66 HOH HOH . F 4 HOH B 25 86 70 HOH HOH . F 4 HOH B 26 87 73 HOH HOH . F 4 HOH B 27 88 75 HOH HOH . F 4 HOH B 28 89 76 HOH HOH . F 4 HOH B 29 90 79 HOH HOH . F 4 HOH B 30 91 81 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 35.829 _atom_site.Cartn_y 8.786 _atom_site.Cartn_z 32.085 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 122 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #