data_1BUX # _model_server_result.job_id 5rPd3aHpUNCIiux5z1dXsw _model_server_result.datetime_utc '2025-02-05 06:03:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":160}' # _entry.id 1BUX # _exptl.entry_id 1BUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.264 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BUX _cell.length_a 71.5 _cell.length_b 71.5 _cell.length_c 153.9 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 107.25 61.920816 51.3 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H15 N5 O13 P2 S' _chem_comp.formula_weight 507.264 _chem_comp.id PPS _chem_comp.mon_nstd_flag . _chem_comp.name "3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S2 OS1 PPS sing 245 n n S2 OS2 PPS doub 246 n n S2 OS3 PPS doub 247 n n S2 O6P PPS sing 248 n n OS1 HO1 PPS sing 249 n n O6P P2 PPS sing 250 n n P2 O4P PPS doub 251 n n P2 O5P PPS sing 252 n n P2 O5' PPS sing 253 n n O5P HO5P PPS sing 254 n n O5' C5' PPS sing 255 n n C5' C4' PPS sing 256 n n C5' "H5'1" PPS sing 257 n n C5' "H5'2" PPS sing 258 n n C4' O4' PPS sing 259 n n C4' C3' PPS sing 260 n n C4' H4' PPS sing 261 n n O4' C1' PPS sing 262 n n C1' N9 PPS sing 263 n n C1' C2' PPS sing 264 n n C1' H1' PPS sing 265 n n N9 C4 PPS sing 266 n y N9 C8 PPS sing 267 n y C4 N3 PPS sing 268 n y C4 C5 PPS doub 269 n y N3 C2 PPS doub 270 n y C2 N1 PPS sing 271 n y C2 H2 PPS sing 272 n n N1 C6 PPS doub 273 n y C6 N6 PPS sing 274 n n C6 C5 PPS sing 275 n y N6 HN61 PPS sing 276 n n N6 HN62 PPS sing 277 n n C5 N7 PPS sing 278 n y N7 C8 PPS doub 279 n y C8 H8 PPS sing 280 n n C2' O2' PPS sing 281 n n C2' C3' PPS sing 282 n n C2' H2' PPS sing 283 n n O2' HO2' PPS sing 284 n n C3' O3' PPS sing 285 n n C3' H3' PPS sing 286 n n O3' P1 PPS sing 287 n n P1 O1P PPS sing 288 n n P1 O2P PPS sing 289 n n P1 O3P PPS doub 290 n n O1P HO1P PPS sing 291 n n O2P HO2P PPS sing 292 n n # _atom_sites.entry_id 1BUX _atom_sites.fract_transf_matrix[1][1] 0.013986 _atom_sites.fract_transf_matrix[1][2] 0.008075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PPS A 1 160 160 PPS PPS . E 2 PPS B 1 160 160 PPS PPS . F 2 PPS C 1 160 160 PPS PPS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S2 PPS . A . D 2 64.462 31.827 -4.927 0.35 31.29 ? S2 PPS 160 A 1 HETATM 2 S S2 PPS . B . D 2 65.595 27.273 -3.012 0.35 31.06 ? S2 PPS 160 A 1 HETATM 3 O OS1 PPS . A . D 2 63.463 30.824 -4.48 0.35 31.28 ? OS1 PPS 160 A 1 HETATM 4 O OS1 PPS . B . D 2 65.368 27.56 -1.592 0.35 31.01 ? OS1 PPS 160 A 1 HETATM 5 O OS2 PPS . A . D 2 64.546 31.996 -6.397 0.35 31.17 ? OS2 PPS 160 A 1 HETATM 6 O OS2 PPS . B . D 2 66.43 26.092 -3.258 0.35 31.38 ? OS2 PPS 160 A 1 HETATM 7 O OS3 PPS . A . D 2 64.411 33.089 -4.186 0.35 31.12 ? OS3 PPS 160 A 1 HETATM 8 O OS3 PPS . B . D 2 64.403 27.363 -3.871 0.35 31.13 ? OS3 PPS 160 A 1 HETATM 9 O O6P PPS . A . D 2 65.881 31.163 -4.52 0.35 31.29 ? O6P PPS 160 A 1 HETATM 10 O O6P PPS . B . D 2 66.488 28.497 -3.495 0.35 31.05 ? O6P PPS 160 A 1 HETATM 11 P P2 PPS . . . D 2 66.16 30.062 -3.369 0.81 32.85 ? P2 PPS 160 A 1 HETATM 12 O O4P PPS . A . D 2 65.008 30.189 -2.464 0.81 32.06 ? O4P PPS 160 A 1 HETATM 13 O O4P PPS . B . D 2 66.122 30.621 -4.737 0.35 31.37 ? O4P PPS 160 A 1 HETATM 14 O O5P PPS . . . D 2 66.488 28.761 -4.003 0.35 31.16 ? O5P PPS 160 A 1 HETATM 15 O O5' PPS . . . D 2 67.473 30.604 -2.609 0.81 30.9 ? O5' PPS 160 A 1 HETATM 16 C C5' PPS . . . D 2 67.882 31.891 -2.687 0.81 30.63 ? C5' PPS 160 A 1 HETATM 17 C C4' PPS . . . D 2 68.79 32.1 -1.579 0.81 30.75 ? C4' PPS 160 A 1 HETATM 18 O O4' PPS . . . D 2 68.878 33.534 -1.556 0.81 31.61 ? O4' PPS 160 A 1 HETATM 19 C C1' PPS . . . D 2 67.85 34.118 -0.709 0.81 30.99 ? C1' PPS 160 A 1 HETATM 20 N N9 PPS . . . D 2 66.998 34.913 -1.532 0.81 30.64 ? N9 PPS 160 A 1 HETATM 21 C C4 PPS . . . D 2 66.783 36.251 -1.484 0.81 31.1 ? C4 PPS 160 A 1 HETATM 22 N N3 PPS . . . D 2 67.452 37.123 -0.697 0.81 30.67 ? N3 PPS 160 A 1 HETATM 23 C C2 PPS . . . D 2 66.918 38.297 -0.972 0.81 31.16 ? C2 PPS 160 A 1 HETATM 24 N N1 PPS . . . D 2 65.944 38.695 -1.847 0.81 31.2 ? N1 PPS 160 A 1 HETATM 25 C C6 PPS . . . D 2 65.308 37.804 -2.612 0.81 31.05 ? C6 PPS 160 A 1 HETATM 26 N N6 PPS . . . D 2 64.265 38.12 -3.406 0.81 30.62 ? N6 PPS 160 A 1 HETATM 27 C C5 PPS . . . D 2 65.768 36.508 -2.414 0.81 31.07 ? C5 PPS 160 A 1 HETATM 28 N N7 PPS . . . D 2 65.35 35.355 -3.002 0.81 31.2 ? N7 PPS 160 A 1 HETATM 29 C C8 PPS . . . D 2 66.12 34.467 -2.45 0.81 31.35 ? C8 PPS 160 A 1 HETATM 30 C C2' PPS . . . D 2 67.091 32.895 -0.187 0.81 31.42 ? C2' PPS 160 A 1 HETATM 31 O O2' PPS . . . D 2 66.55 33.053 1.133 0.81 31.44 ? O2' PPS 160 A 1 HETATM 32 C C3' PPS . . . D 2 68.16 31.76 -0.223 0.81 31.56 ? C3' PPS 160 A 1 HETATM 33 O O3' PPS . . . D 2 69.087 31.908 0.93 0.81 31.38 ? O3' PPS 160 A 1 HETATM 34 P P1 PPS . . . D 2 69.36 30.695 1.975 0.81 31.24 ? P1 PPS 160 A 1 HETATM 35 O O1P PPS . . . D 2 70.019 31.383 3.125 0.81 30.91 ? O1P PPS 160 A 1 HETATM 36 O O2P PPS . . . D 2 68.008 30.121 2.209 0.81 31.17 ? O2P PPS 160 A 1 HETATM 37 O O3P PPS . . . D 2 70.249 29.779 1.246 0.81 31.53 ? O3P PPS 160 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #