data_1BV9
#
_model_server_result.job_id            -IXDmDYY-FYX9uwfi5TY8A 
_model_server_result.datetime_utc      '2025-02-05 09:47:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bv9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":638}' 
#
_entry.id    1BV9 
#
_exptl.entry_id    1BV9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              758.908 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "[4R-(4ALPHA,5ALPHA,6BETA,7BETA)]-3,3'-[[TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-D IYL] BIS(METHYLENE)]BIS[N-2-THIAZOLYLBENZAMIDE]" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BV9 
_cell.length_a            62.8 
_cell.length_b            62.8 
_cell.length_c            83.5 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BV9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C41 H38 N6 O5 S2' 
_chem_comp.formula_weight    758.908 
_chem_comp.id                XV6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "[4R-(4ALPHA,5ALPHA,6BETA,7BETA)]-3,3'-[[TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-D IYL] BIS(METHYLENE)]BIS[N-2-THIAZOLYLBENZAMIDE]" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     XV638 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 XV6 doub 376 n n 
O4 C4 XV6 sing 377 n n 
O4 HO41 XV6 sing 378 n n 
O5 C5 XV6 sing 379 n n 
O5 HO51 XV6 sing 380 n n 
N2 C1 XV6 sing 381 n n 
N2 C2 XV6 sing 382 n n 
N2 C3 XV6 sing 383 n n 
N7 C1 XV6 sing 384 n n 
N7 C6 XV6 sing 385 n n 
N7 C7 XV6 sing 386 n n 
C2 C20 XV6 sing 387 n n 
C2 H21 XV6 sing 388 n n 
C2 H22 XV6 sing 389 n n 
C3 C4 XV6 sing 390 n n 
C3 C31 XV6 sing 391 n n 
C3 H31 XV6 sing 392 n n 
C4 C5 XV6 sing 393 n n 
C4 H41 XV6 sing 394 n n 
C5 C6 XV6 sing 395 n n 
C5 H51 XV6 sing 396 n n 
C6 C61 XV6 sing 397 n n 
C6 H61 XV6 sing 398 n n 
C7 C70 XV6 sing 399 n n 
C7 H71 XV6 sing 400 n n 
C7 H72 XV6 sing 401 n n 
C31 C32 XV6 sing 402 n n 
C31 H311 XV6 sing 403 n n 
C31 H312 XV6 sing 404 n n 
C32 C33 XV6 doub 405 n y 
C32 C37 XV6 sing 406 n y 
C33 C34 XV6 sing 407 n y 
C33 H331 XV6 sing 408 n n 
C34 C35 XV6 doub 409 n y 
C34 H341 XV6 sing 410 n n 
C35 C36 XV6 sing 411 n y 
C35 H351 XV6 sing 412 n n 
C36 C37 XV6 doub 413 n y 
C36 H361 XV6 sing 414 n n 
C37 H371 XV6 sing 415 n n 
C61 C62 XV6 sing 416 n n 
C61 H611 XV6 sing 417 n n 
C61 H612 XV6 sing 418 n n 
C62 C63 XV6 doub 419 n y 
C62 C67 XV6 sing 420 n y 
C63 C64 XV6 sing 421 n y 
C63 H631 XV6 sing 422 n n 
C64 C65 XV6 doub 423 n y 
C64 H641 XV6 sing 424 n n 
C65 C66 XV6 sing 425 n y 
C65 H651 XV6 sing 426 n n 
C66 C67 XV6 doub 427 n y 
C66 H661 XV6 sing 428 n n 
C67 H671 XV6 sing 429 n n 
C20 C21 XV6 doub 430 n y 
C20 C25 XV6 sing 431 n y 
C21 C22 XV6 sing 432 n y 
C21 H211 XV6 sing 433 n n 
C22 C23 XV6 doub 434 n y 
C22 C26 XV6 sing 435 n n 
C23 C24 XV6 sing 436 n y 
C23 H231 XV6 sing 437 n n 
C24 C25 XV6 doub 438 n y 
C24 H241 XV6 sing 439 n n 
C25 H251 XV6 sing 440 n n 
C26 O26 XV6 doub 441 n n 
C26 N26 XV6 sing 442 n n 
N26 C27 XV6 sing 443 n n 
N26 HN26 XV6 sing 444 n n 
N27 C27 XV6 doub 445 n y 
N27 C28 XV6 sing 446 n y 
C27 S29 XV6 sing 447 n y 
C28 C29 XV6 doub 448 n y 
C28 H281 XV6 sing 449 n n 
S29 C29 XV6 sing 450 n y 
C29 H291 XV6 sing 451 n n 
C70 C71 XV6 doub 452 n y 
C70 C75 XV6 sing 453 n y 
C71 C72 XV6 sing 454 n y 
C71 H711 XV6 sing 455 n n 
C72 C73 XV6 doub 456 n y 
C72 C76 XV6 sing 457 n n 
C73 C74 XV6 sing 458 n y 
C73 H731 XV6 sing 459 n n 
C74 C75 XV6 doub 460 n y 
C74 H741 XV6 sing 461 n n 
C75 H751 XV6 sing 462 n n 
C76 O76 XV6 doub 463 n n 
C76 N76 XV6 sing 464 n n 
N76 C77 XV6 sing 465 n n 
N76 HN76 XV6 sing 466 n n 
N77 C77 XV6 doub 467 n y 
N77 C78 XV6 sing 468 n y 
C77 S79 XV6 sing 469 n y 
C78 C79 XV6 doub 470 n y 
C78 H781 XV6 sing 471 n n 
S79 C79 XV6 sing 472 n y 
C79 H791 XV6 sing 473 n n 
#
_atom_sites.entry_id                     1BV9 
_atom_sites.fract_transf_matrix[1][1]    0.015923 
_atom_sites.fract_transf_matrix[1][2]    0.009193 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011976 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XV6 A 1 638 638 XV6 XV6 . 
D 3 HOH A 1 402 402 HOH HOH . 
D 3 HOH A 2 403 403 HOH HOH . 
D 3 HOH A 3 404 404 HOH HOH . 
D 3 HOH A 4 410 410 HOH HOH . 
D 3 HOH A 5 411 411 HOH HOH . 
D 3 HOH A 6 412 412 HOH HOH . 
D 3 HOH A 7 416 416 HOH HOH . 
D 3 HOH A 8 418 418 HOH HOH . 
D 3 HOH A 9 421 421 HOH HOH . 
D 3 HOH A 10 423 423 HOH HOH . 
D 3 HOH A 11 426 426 HOH HOH . 
D 3 HOH A 12 429 429 HOH HOH . 
D 3 HOH A 13 430 430 HOH HOH . 
D 3 HOH A 14 431 431 HOH HOH . 
D 3 HOH A 15 435 435 HOH HOH . 
D 3 HOH A 16 437 437 HOH HOH . 
D 3 HOH A 17 440 440 HOH HOH . 
D 3 HOH A 18 441 441 HOH HOH . 
D 3 HOH A 19 443 443 HOH HOH . 
D 3 HOH A 20 446 446 HOH HOH . 
D 3 HOH A 21 452 452 HOH HOH . 
D 3 HOH A 22 456 456 HOH HOH . 
D 3 HOH A 23 459 459 HOH HOH . 
D 3 HOH A 24 461 461 HOH HOH . 
D 3 HOH A 25 462 462 HOH HOH . 
D 3 HOH A 26 463 463 HOH HOH . 
D 3 HOH A 27 467 467 HOH HOH . 
D 3 HOH A 28 468 468 HOH HOH . 
D 3 HOH A 29 470 470 HOH HOH . 
D 3 HOH A 30 471 471 HOH HOH . 
D 3 HOH A 31 472 472 HOH HOH . 
D 3 HOH A 32 476 476 HOH HOH . 
D 3 HOH A 33 478 478 HOH HOH . 
D 3 HOH A 34 487 487 HOH HOH . 
D 3 HOH A 35 489 489 HOH HOH . 
D 3 HOH A 36 490 490 HOH HOH . 
D 3 HOH A 37 492 492 HOH HOH . 
D 3 HOH A 38 494 494 HOH HOH . 
D 3 HOH A 39 495 495 HOH HOH . 
D 3 HOH A 40 497 497 HOH HOH . 
E 3 HOH B 1 401 401 HOH HOH . 
E 3 HOH B 2 405 405 HOH HOH . 
E 3 HOH B 3 407 407 HOH HOH . 
E 3 HOH B 4 408 408 HOH HOH . 
E 3 HOH B 5 409 409 HOH HOH . 
E 3 HOH B 6 413 413 HOH HOH . 
E 3 HOH B 7 414 414 HOH HOH . 
E 3 HOH B 8 415 415 HOH HOH . 
E 3 HOH B 9 417 417 HOH HOH . 
E 3 HOH B 10 419 419 HOH HOH . 
E 3 HOH B 11 420 420 HOH HOH . 
E 3 HOH B 12 422 422 HOH HOH . 
E 3 HOH B 13 424 424 HOH HOH . 
E 3 HOH B 14 425 425 HOH HOH . 
E 3 HOH B 15 428 428 HOH HOH . 
E 3 HOH B 16 432 432 HOH HOH . 
E 3 HOH B 17 433 433 HOH HOH . 
E 3 HOH B 18 434 434 HOH HOH . 
E 3 HOH B 19 436 436 HOH HOH . 
E 3 HOH B 20 438 438 HOH HOH . 
E 3 HOH B 21 439 439 HOH HOH . 
E 3 HOH B 22 444 444 HOH HOH . 
E 3 HOH B 23 445 445 HOH HOH . 
E 3 HOH B 24 447 447 HOH HOH . 
E 3 HOH B 25 448 448 HOH HOH . 
E 3 HOH B 26 450 450 HOH HOH . 
E 3 HOH B 27 451 451 HOH HOH . 
E 3 HOH B 28 453 453 HOH HOH . 
E 3 HOH B 29 460 460 HOH HOH . 
E 3 HOH B 30 464 464 HOH HOH . 
E 3 HOH B 31 465 465 HOH HOH . 
E 3 HOH B 32 466 466 HOH HOH . 
E 3 HOH B 33 469 469 HOH HOH . 
E 3 HOH B 34 474 474 HOH HOH . 
E 3 HOH B 35 475 475 HOH HOH . 
E 3 HOH B 36 477 477 HOH HOH . 
E 3 HOH B 37 479 479 HOH HOH . 
E 3 HOH B 38 480 480 HOH HOH . 
E 3 HOH B 39 482 482 HOH HOH . 
E 3 HOH B 40 483 483 HOH HOH . 
E 3 HOH B 41 484 484 HOH HOH . 
E 3 HOH B 42 485 485 HOH HOH . 
E 3 HOH B 43 486 486 HOH HOH . 
E 3 HOH B 44 488 488 HOH HOH . 
E 3 HOH B 45 491 491 HOH HOH . 
E 3 HOH B 46 493 493 HOH HOH . 
E 3 HOH B 47 496 496 HOH HOH . 
E 3 HOH B 48 498 498 HOH HOH . 
E 3 HOH B 49 499 499 HOH HOH . 
E 3 HOH B 50 500 500 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 XV6 . . . C 2 -8.239 14.332 27.722 1 14.88 ? O1 XV6 638 A 1 
HETATM 2 O O4 XV6 . . . C 2 -11.795 18.622 28.908 1 10.51 ? O4 XV6 638 A 1 
HETATM 3 O O5 XV6 . . . C 2 -10.202 19.589 26.813 1 14.93 ? O5 XV6 638 A 1 
HETATM 4 N N2 XV6 . . . C 2 -9.743 15.55 28.754 1 15.87 ? N2 XV6 638 A 1 
HETATM 5 N N7 XV6 . . . C 2 -8.756 16.196 26.694 1 11.03 ? N7 XV6 638 A 1 
HETATM 6 C C1 XV6 . . . C 2 -8.914 15.344 27.713 1 11.21 ? C1 XV6 638 A 1 
HETATM 7 C C2 XV6 . . . C 2 -9.531 14.702 29.952 1 16.48 ? C2 XV6 638 A 1 
HETATM 8 C C3 XV6 . . . C 2 -10.891 16.496 28.793 1 11.65 ? C3 XV6 638 A 1 
HETATM 9 C C4 XV6 . . . C 2 -10.632 17.966 28.512 1 11.06 ? C4 XV6 638 A 1 
HETATM 10 C C5 XV6 . . . C 2 -10.306 18.214 27.059 1 9.8 ? C5 XV6 638 A 1 
HETATM 11 C C6 XV6 . . . C 2 -8.919 17.673 26.808 1 12.18 ? C6 XV6 638 A 1 
HETATM 12 C C7 XV6 . . . C 2 -8.111 15.654 25.49 1 11.27 ? C7 XV6 638 A 1 
HETATM 13 C C31 XV6 . . . C 2 -12.088 15.871 28.053 1 7.66 ? C31 XV6 638 A 1 
HETATM 14 C C32 XV6 . . . C 2 -12.576 14.592 28.701 1 9.32 ? C32 XV6 638 A 1 
HETATM 15 C C33 XV6 . . . C 2 -12.155 13.342 28.192 1 9.88 ? C33 XV6 638 A 1 
HETATM 16 C C34 XV6 . . . C 2 -12.577 12.161 28.826 1 10.78 ? C34 XV6 638 A 1 
HETATM 17 C C35 XV6 . . . C 2 -13.413 12.241 29.96 1 9.96 ? C35 XV6 638 A 1 
HETATM 18 C C36 XV6 . . . C 2 -13.837 13.482 30.466 1 8.23 ? C36 XV6 638 A 1 
HETATM 19 C C37 XV6 . . . C 2 -13.413 14.66 29.83 1 5.3 ? C37 XV6 638 A 1 
HETATM 20 C C61 XV6 . . . C 2 -7.846 18.25 27.77 1 13.45 ? C61 XV6 638 A 1 
HETATM 21 C C62 XV6 . . . C 2 -6.439 18.064 27.237 1 16.94 ? C62 XV6 638 A 1 
HETATM 22 C C63 XV6 . . . C 2 -6.052 18.714 26.033 1 15.6 ? C63 XV6 638 A 1 
HETATM 23 C C64 XV6 . . . C 2 -4.763 18.505 25.502 1 16.67 ? C64 XV6 638 A 1 
HETATM 24 C C65 XV6 . . . C 2 -3.866 17.64 26.188 1 15.19 ? C65 XV6 638 A 1 
HETATM 25 C C66 XV6 . . . C 2 -4.254 16.997 27.395 1 14.57 ? C66 XV6 638 A 1 
HETATM 26 C C67 XV6 . . . C 2 -5.545 17.212 27.917 1 14.99 ? C67 XV6 638 A 1 
HETATM 27 C C20 XV6 . . . C 2 -9.436 15.459 31.252 1 15.25 ? C20 XV6 638 A 1 
HETATM 28 C C21 XV6 . . . C 2 -10.158 14.98 32.356 1 15.89 ? C21 XV6 638 A 1 
HETATM 29 C C22 XV6 . . . C 2 -10.12 15.692 33.574 1 18.57 ? C22 XV6 638 A 1 
HETATM 30 C C23 XV6 . . . C 2 -9.361 16.879 33.687 1 19.07 ? C23 XV6 638 A 1 
HETATM 31 C C24 XV6 . . . C 2 -8.631 17.364 32.577 1 17.05 ? C24 XV6 638 A 1 
HETATM 32 C C25 XV6 . . . C 2 -8.665 16.645 31.361 1 17.61 ? C25 XV6 638 A 1 
HETATM 33 C C26 XV6 . . . C 2 -10.843 15.171 34.776 1 22.52 ? C26 XV6 638 A 1 
HETATM 34 O O26 XV6 . . . C 2 -11.256 15.89 35.674 1 17.61 ? O26 XV6 638 A 1 
HETATM 35 N N26 XV6 . . . C 2 -10.965 13.827 34.814 1 24.45 ? N26 XV6 638 A 1 
HETATM 36 N N27 XV6 . . . C 2 -11.443 11.824 36.221 1 28.26 ? N27 XV6 638 A 1 
HETATM 37 C C27 XV6 . . . C 2 -11.529 13.135 35.979 1 26.1 ? C27 XV6 638 A 1 
HETATM 38 C C28 XV6 . . . C 2 -12.015 11.455 37.419 1 27.2 ? C28 XV6 638 A 1 
HETATM 39 S S29 XV6 . . . C 2 -12.335 13.887 37.25 1 27.24 ? S29 XV6 638 A 1 
HETATM 40 C C29 XV6 . . . C 2 -12.585 12.495 38.165 1 29.64 ? C29 XV6 638 A 1 
HETATM 41 C C70 XV6 . . . C 2 -8.755 15.953 24.177 1 8.91 ? C70 XV6 638 A 1 
HETATM 42 C C71 XV6 . . . C 2 -7.925 16.244 23.096 1 12.12 ? C71 XV6 638 A 1 
HETATM 43 C C72 XV6 . . . C 2 -8.489 16.591 21.856 1 10.6 ? C72 XV6 638 A 1 
HETATM 44 C C73 XV6 . . . C 2 -9.887 16.634 21.701 1 13.93 ? C73 XV6 638 A 1 
HETATM 45 C C74 XV6 . . . C 2 -10.742 16.321 22.782 1 10.91 ? C74 XV6 638 A 1 
HETATM 46 C C75 XV6 . . . C 2 -10.165 15.98 24.023 1 15.16 ? C75 XV6 638 A 1 
HETATM 47 C C76 XV6 . . . C 2 -7.61 16.942 20.709 1 15.24 ? C76 XV6 638 A 1 
HETATM 48 O O76 XV6 . . . C 2 -7.937 17.739 19.851 1 10.93 ? O76 XV6 638 A 1 
HETATM 49 N N76 XV6 . . . C 2 -6.412 16.333 20.695 1 15.58 ? N76 XV6 638 A 1 
HETATM 50 N N77 XV6 . . . C 2 -4.147 16.081 19.659 1 19.29 ? N77 XV6 638 A 1 
HETATM 51 C C77 XV6 . . . C 2 -5.402 16.574 19.643 1 19.75 ? C77 XV6 638 A 1 
HETATM 52 C C78 XV6 . . . C 2 -3.424 16.426 18.537 1 20.58 ? C78 XV6 638 A 1 
HETATM 53 S S79 XV6 . . . C 2 -5.654 17.475 18.223 1 23.74 ? S79 XV6 638 A 1 
HETATM 54 C C79 XV6 . . . C 2 -4.109 17.221 17.587 1 20.94 ? C79 XV6 638 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           429 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           54 
#